EWM21925.1, cds8759 (CDS) Nannochloropsis gaditana

Overview
NameEWM21925.1
Unique Namecds8759
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:164594..165285 +
Alignment locationKK037250.1:165415..165423 +
Alignment locationKK037250.1:165476..165587 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21925.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100070g14.4239.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:164594..165285 +
KK037250.1supercontigKK037250.1:165415..165423 +
KK037250.1supercontigKK037250.1:165476..165587 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21925.1 vs. NCBI_GenBank
Match: gi|585102271|gb|EWM21925.1| (hypothetical protein Naga_100070g14 [Nannochloropsis gaditana])

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0 
Query:    1 MASFDSRQLLGSSFIFWIRQIPLLFLLVQPIYGGLQRHMRDAAFDTSALVVDGIPSGQEPPATVNVDYPFPYINGHPIDSCLSVLGTSGDCGRMAADFFCRFQNCEAAVSFQESSSDRGPTWIAGDETIRDAGGKSFDNITCQCSVPNSIAPGSINGNQIIYESPRILNHPVDFCLEKNNVACGKPAADAFCESFGNSGSTRFVEDPRPTLTTWLIGDHSVSEAPDRHSFRSITQERGTKTIKNNSKNILSSVQSREYRHALHILFHTRK 270
            MASFDSRQLLGSSFIFWIRQIPLLFLLVQPIYGGLQRHMRDAAFDTSALVVDGIPSGQEPPATVNVDYPFPYINGHPIDSCLSVLGTSGDCGRMAADFFCRFQNCEAAVSFQESSSDRGPTWIAGDETIRDAGGKSFDNITCQCSVPNSIAPGSINGNQIIYESPRILNHPVDFCLEKNNVACGKPAADAFCESFGNSGSTRFVEDPRPTLTTWLIGDHSVSEAPDRHSFRSITQERGTKTIKNNSKNILSSVQSREYRHALHILFHTRK
Sbjct:    1 MASFDSRQLLGSSFIFWIRQIPLLFLLVQPIYGGLQRHMRDAAFDTSALVVDGIPSGQEPPATVNVDYPFPYINGHPIDSCLSVLGTSGDCGRMAADFFCRFQNCEAAVSFQESSSDRGPTWIAGDETIRDAGGKSFDNITCQCSVPNSIAPGSINGNQIIYESPRILNHPVDFCLEKNNVACGKPAADAFCESFGNSGSTRFVEDPRPTLTTWLIGDHSVSEAPDRHSFRSITQERGTKTIKNNSKNILSSVQSREYRHALHILFHTRK 270
[Close]
BLAST of EWM21925.1 vs. NCBI_GenBank
Match: gi|1056939518|ref|WP_068353259.1| (hypothetical protein [Jannaschia sp. EhC01] >gi|1032112132|gb|OAN84515.1| hypothetical protein A8B78_06555 [Jannaschia sp. EhC01])

HSP 1 Score: 60.4622 bits (145), Expect = 6.689e-7
Identity = 48/184 (26.09%), Postives = 82/184 (44.57%), Query Frame = 0 
Query:   60 PPATVNVDYPFPYINGHPIDSCLSVLGTSGDCGRMAADFFCRFQNCEAAVSFQESSSDRGPTWIAGDETIRDAGGKSFDNITCQCSVPNSIAPGSINGNQII------YESPRILNHPVDFCLEKNNVACGKPAADAFCESFGNSGSTRFVEDPRPTLTTWLIGDHSVSEAPDRHSFRSITQER 237
            PP  V   Y FP +NG  +D C++    + +CG+  AD+FC+ Q    A S++     R  T + G   I   G  +  ++ C      ++   +             +E PR+    VD+C+      CG+  AD FC   G S ++ +  +  P   T ++GD+ +  A    + R++T ER
Sbjct:  172 PPTVVGTRYDFPRVNGELVDWCVTW---ATNCGQGGADYFCQSQGHGNASSWERFPGQR--TLVLGSNQICPGGCDALRDVVCTPGAGAAVPAPAPAPPPPPTLMSQRFELPRVNGELVDWCVTW-ATNCGQGGADQFCRRQGFSHASHW--ERYPGQRTLVLGDNRIC-ASGCDALRAVTCER 346
The following BLAST results are available for this feature:
BLAST of EWM21925.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102271|gb|EWM21925.1|0.000e+0100.00hypothetical protein Naga_100070g14 [Nannochlorops... [more]
gi|1056939518|ref|WP_068353259.1|6.689e-726.09hypothetical protein [Jannaschia sp. EhC01] >gi|10... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8789rna8789Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications