rna8783, rna8783 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8783
Unique Name	rna8783
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1573
Alignment location	KK037250.1:151014..153116 +

Link to JBrowse

Properties


Property Name	Value
Product	actin-related protein
Orig transcript id	gnl\|cribi\|Naga_100070g8.4225.mrna
Orig protein id	gnl\|cribi\|Naga_100070g8.4225
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:151014..153116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g8	gene8514	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8783	rna8783-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21911.1	cds8753	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:151014..153116+
coding sequence from alignment at KK037250.1:151014..153116+

mRNA sequence

>rna8783 ID=rna8783|Name=rna8783|organism=Nannochloropsis gaditana|type=mRNA|length=1573bp
CAAGAGAGGTCATCGGCAACGGTGTGGGGCCTGGCCAATGTAACCTTGTC
AACAAACCACGAACACAAATCAGGAGGTAAGGGGCCACTGAGCTTTTCGC
AAGCAGCAGTGCGCGCCAAGCCATGCCATCTTCCGCAACCAAGCGCCCGA
CATCTCCATTTCCCGCAAAGTCATGCCAAGAGGCGAGCGACCTGCCTCCC
AGCGTGCATTGCAGCGGTCACCCACTTCTGCATCACAAGATGACTCTGCT
GCGTGACCGTAAAACAACGACACGAGATTTTCGGCACCTCATGCGTGAGC
TGACACTTTATCTGGGCTATGAAGCAACAACTGAAATTACTCTCAAACCG
CGGGTGGTGGAAGGTAGCCTAGGACCTGTTGAGGGGCAAAAGCTCTCGGA
TAAAATCGCTATCGTTCCCATTCTACGTGGAGGATTGGGTATGGTCGATG
CCATGACGGAGATTTTGCCCAATGCAGCTGTTTATCATGTTGGCATGTTC
AGCAATCATCGGTCCTTGAGTCTACCAATTCAGTATTATAATCGCCTCCC
TAAAGAGAAGGATAAAGTTGCAGACCTCACATTTGTTCTCGACCCATTAA
TAGCCACAGCCGGTACCTGCAGTGCCACAGTCTCCATTTTAAAAAAATGG
GGCACCAAAAAAATTATAGTTATAGGCGTGGTAGGTGCCTTGCAGGGTTT
GCACAAGCTGACTCAAGCTCACCCTGACATTCGCGTGCACGTAGCCGCGA
TCGATGAAGCAGTCTCCGCAGATGGACATATCTTGCCTGGAATCGGAGAC
GCTAGCGAACGTCTTTTCAATGCGCATGTTGGAGAACCAGATGATGAGAC
ATCTGTGCTTAATTTATGTGCTACGAAGAAGACTAAACGCAGTGACAATG
GCTGTTGAAGTCTGACTGTAATATTGATAAAGCTCTCAGAAGTTATCTGT
TTTACCACGGTGTTGTACAACCACCTGCATAAGGCAAAGATGGTTGATTC
AGACTATTGAGGTGGCGCGTATGCAGTCCAGTCCGATCGAACTCGAGCGC
TAGAAGAATCAAAAGGAATAGAAGGCTCGATGGAAAAAAGCAAATTCAAA
TCAGATTTAAAACCAAAGCTACAAGCATGAGGTGATCTGGAATTTCAAAT
GTGCACTATGTGGTGAACCGGGAACACCTGGGGAATATCCTCCAAAGATA
CTTCCATTGATTGTTTCGATAAGTCCCGTCAGAACTTTGCAAACAATTGC
TCACATGTACCCAGTTGTAAGTTCTAAAAATTCTCCCATGGACTGATTAT
GTTTTTCTTTTGCCTTCATTGATCGTTGGCTTCCTGTTTGTGCAATTATG
AGAAATAGGAATCCTTTGATCATCTTCCCCGTGGCAACCGACTCAATGAT
GAATTTCTTATTTTCATTGAAATCTGGTTGACCTTCTTGTTTCGAAGTCG
ATGCAAAGCACAACTAGCGAGCTCTCTTTGATTGAGCATAGGCAATGCAT
GTAGGCAGACTTAAGGCTTTTCAGAACTTTAGGATGATGTTTAAAGAAAC
ATTTGATTGACGAAATTTGGAAT

protein sequence of rna8783

>rna8783-protein ID=rna8783-protein|Name=rna8783|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDG
DRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLIN
GHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAEL
AFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLN
QLVGRSERGGDWLDGKVGEWLESRKAKIGLFGFERGTIPEYMPTTYWRFQ
EQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADK
TLCRIPELLMVRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVD
VRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTATPLERR
FSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKKRFH

mRNA from alignment at KK037250.1:151014..153116+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8783 ID=rna8783|Name=rna8783|organism=Nannochloropsis gaditana|type=mRNA|length=2103bp|location=Sequence derived from alignment at KK037250.1:151014..153116+ (Nannochloropsis gaditana)
TGCACCGAAATTAAAGGCAACCAGTCAAAGTTGCTTATGCATCCATGACC
GACATAATCATAACGATTTTACAAAGATGTGAACTCACCGTTGGCATTTT
AAGTTACTTTCAACAGGGGGTGTCAATGCCTGCCAGTTTGCTGGAAAGCA
AGAAGGGTTAGGATCATACTGTCCCAAATGTACCCCATGTGGACACATGC
TTTTCCCTCTATTCATGCTGCCCAAATAAATTCAGCGTTGGGAAAGAGCG
AGTATACTTGACAGCCTTAGACTTCATTTCTATCATGTATCCTATTAGAA
AGTAAGCCGTTCTCAAAGCGATGAATATGACAGAAGCAAAGCGACGAGAA
ACAATTCGGGGAAGGTACACTACATTAAAACATAAACATGCACTTTctca
ctttcctcccacagCTTCTTTCAATACTTCCTGAAACTGGCAGCGCCTTG
ATGTATTGTGGGGACGAAGTATTTTCCGTCGTTGGCGACTTGGGCACGCA
GAGTAGCCGCTTCGGGTATGCAGGTGAAGATTTGCCCAAGGTTGTCTTCC
CCTCGGCAATAGGAAATGTGGTCCATAGAACAGGTAGCGAAGAAGATGGC
GacagaaagaagaagagcactGGCGGGGCCAGCAGCGATGTGGAAGGTGC
GGTCGTTGCAAAGACGAAGGCCAACACGTCTGGGACGCTGGGGGAAGCCA
ACATAGGGATACGGCGCACAGATTTGGAGCTGTCATTCCCCCTTATAAAT
GGACACGTGCAAGACTGGGATGCTGTGGAATGCATTTGGGCCCACGCCTT
TGAGCAATTGTCCGTGAAAGAGGGCGCCAAGGGCGTGCCTTACATGTATG
CACTGCCAGCTTGGGCCTCGCGCGCCGAGAGCCAGAAGTCGGCCGAGTTG
GCGTTTGAGCGATTTGATCTAGGTGCTTTGTATCTAGCCCGTTCGCCTAT
GCTAAGCGCTTTCTCAACCGGTCGGTCCAGTGGGGTGGTGTGCGACTGTG
GGGCGGGGTCGACAAGCGCTGTGCCTATCTTAGATGGCTACGTCCTGAAC
CAATTAGTGGGGCGGAGCGAGCGCGGAGGAGATTGGTTGGATGGTAAAGT
AGGCGAGTGGTTAGAGTCGAGAAAGGCAAAGATAGGGCTTTTCGGCTTCG
AGAGAGGTACTATTCCTGAATATATGCCGACAACATACTGGCGGTTTCAA
GAGCAGCGTGTGCTGCGAGACGTGAAGGAAAGCTGCTGCTTGATCCCACA
GGTTGACAGTGACGATGGGGCTGTATTTGACATTGAAGAGAACGACGCAG
AGAAGGGCGCGTATGAGCTGCCGGATGGAACGCGGGTGAAGGCGGATAAG
ACGCTGTGCAGGATACCCGAGCTCCTGATGGTGCGTGGGGACGGCGCGGG
CTGCTCAATCTCGCCCGCAGACGTTTCTCCGTCACGCGAAGGAGCTTTTC
ATGACTTGCCGAGCATGGTCTATACAGCAGTAGAGAAGGCAGACGTGGAT
GTGCGCAAGGAGCTGTTGGGAAACGTAATACTTACGGGTGGAGGCAGCTG
CTTCCGAGGGTCTTCGGAGCGGCTGCAATATGAGCTGACGGAGAAGGTCC
CGGTGGCCTACAAGGTCAAGATCGTGACAGCCACACCTTTGGAACGCCGC
TTTAGTGCTTGGATTGGGGGTTCCATCCTGGCCTCACTCGGCTCTTTCCA
GCAACTGTGGCTGTCCAAAGCGGAATATGAGGAGATGGGGGCGGAGCTTG
CTTGCAAGAAGAGATTTCATTAGAGCGACAAACTTTGTGAAACATAAAAC
AAAATGCAAATGAAATAATATAAGACCACGCAAGAGAGAGCGAGCCAAAT
TAAAATTATTTGGAGAACCCTCAGCCATGCTGTGTGTCGTAAAGGTTCAC
TTTCTCAATCCTTATGTGGAGAATGATGGATCCAAGATTGAGGTATCGGT
AAAGTCCGATTCTTTTCCAGTCTTATCATCATTTTTTAGGTCCAGCGTCA
CCAATTACAGCAATTGCACTTTTCTCACTCGCCTCGTCGTGCCTCACACT
AGGAGAGACAAATGCCGAGGAAAACGCGCCGCTAGATAGTTTCACCAGAA
CCC

Coding sequence (CDS) from alignment at KK037250.1:151014..153116+

>rna8783 ID=rna8783|Name=rna8783|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at KK037250.1:151014..153116+ (Nannochloropsis gaditana)
ATGTATTGTGGGGACGAAGTATTTTCCGTCGTTGGCGACTTGGGCACGCA
GAGTAGCCGCTTCGGGTATGCAGGTGAAGATTTGCCCAAGGTTGTCTTCC
CCTCGGCAATAGGAAATGTGGTCCATAGAACAGGTAGCGAAGAAGATGGC
GacagaaagaagaagagcactGGCGGGGCCAGCAGCGATGTGGAAGGTGC
GGTCGTTGCAAAGACGAAGGCCAACACGTCTGGGACGCTGGGGGAAGCCA
ACATAGGGATACGGCGCACAGATTTGGAGCTGTCATTCCCCCTTATAAAT
GGACACGTGCAAGACTGGGATGCTGTGGAATGCATTTGGGCCCACGCCTT
TGAGCAATTGTCCGTGAAAGAGGGCGCCAAGGGCGTGCCTTACATGTATG
CACTGCCAGCTTGGGCCTCGCGCGCCGAGAGCCAGAAGTCGGCCGAGTTG
GCGTTTGAGCGATTTGATCTAGGTGCTTTGTATCTAGCCCGTTCGCCTAT
GCTAAGCGCTTTCTCAACCGGTCGGTCCAGTGGGGTGGTGTGCGACTGTG
GGGCGGGGTCGACAAGCGCTGTGCCTATCTTAGATGGCTACGTCCTGAAC
CAATTAGTGGGGCGGAGCGAGCGCGGAGGAGATTGGTTGGATGGTAAAGT
AGGCGAGTGGTTAGAGTCGAGAAAGGCAAAGATAGGGCTTTTCGGCTTCG
AGAGAGGTACTATTCCTGAATATATGCCGACAACATACTGGCGGTTTCAA
GAGCAGCGTGTGCTGCGAGACGTGAAGGAAAGCTGCTGCTTGATCCCACA
GGTTGACAGTGACGATGGGGCTGTATTTGACATTGAAGAGAACGACGCAG
AGAAGGGCGCGTATGAGCTGCCGGATGGAACGCGGGTGAAGGCGGATAAG
ACGCTGTGCAGGATACCCGAGCTCCTGATGGTGCGTGGGGACGGCGCGGG
CTGCTCAATCTCGCCCGCAGACGTTTCTCCGTCACGCGAAGGAGCTTTTC
ATGACTTGCCGAGCATGGTCTATACAGCAGTAGAGAAGGCAGACGTGGAT
GTGCGCAAGGAGCTGTTGGGAAACGTAATACTTACGGGTGGAGGCAGCTG
CTTCCGAGGGTCTTCGGAGCGGCTGCAATATGAGCTGACGGAGAAGGTCC
CGGTGGCCTACAAGGTCAAGATCGTGACAGCCACACCTTTGGAACGCCGC
TTTAGTGCTTGGATTGGGGGTTCCATCCTGGCCTCACTCGGCTCTTTCCA
GCAACTGTGGCTGTCCAAAGCGGAATATGAGGAGATGGGGGCGGAGCTTG
CTTGCAAGAAGAGATTTCATTAG

Synonyms

Publications