EWM21911.1, cds8753 (CDS) Nannochloropsis gaditana

Overview
NameEWM21911.1
Unique Namecds8753
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:151464..152786 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21911.1
Productactin-related protein
Orig transcript idgnl|cribi|Naga_100070g8.4225.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:151464..152786 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0030154cell differentiation
GO:0016043cellular component organization
GO:0000003reproduction
GO:0006950response to stress
GO:0009416response to light stimulus
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0009791post-embryonic development
GO:0006338chromatin remodeling
GO:0006281DNA repair
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005730nucleolus
GO:0035267NuA4 histone acetyltransferase complex
GO:0031011Ino80 complex
Vocabulary: INTERPRO
TermDefinition
IPR027667Arp4
IPR004000Actin
Homology
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|585102257|gb|EWM21911.1| (actin-related protein [Nannochloropsis gaditana])

HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKIGLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKKRFH 440
            MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKIGLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKKRFH
Sbjct:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKIGLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKKRFH 440          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|674249064|gb|KFK41829.1| (hypothetical protein AALP_AA2G176800 [Arabis alpina])

HSP 1 Score: 290.812 bits (743), Expect = 1.493e-90
Identity = 175/453 (38.63%), Postives = 265/453 (58.50%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKIG-LFGFERG-TIP-EYMPT---------TYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLM---VRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTA-TPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS +G VV      +  D    ++  A S+VE +V  K K      +G   +  RR  +E+  P+ +G V DWD V+ +W HAF    + +  K  P + A P   ++ + +K+AEL FE++ + AL++A++P+L++F++GR++ +V DCG GST+  P+LDGYVL + V  S  GGD+L   + + LES+  KI   + F+R  T P E+  T         +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    +     G   S  D+ PS  G    LP+MV   + K DVDVR+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+WLSK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVG-VVDGNHEMDIDDAANTNSEDAKSNVEESV--KEKGKRKIFVGSQALNFRRDQMEMLSPIKDGIVADWDMVDNVWDHAFRNCLMVD-PKEHPMLLAEPPLNTQQQREKAAELMFEKYQVPALFMAKNPVLTSFASGRATSLVVDCGGGSTTIAPVLDGYVLQKAVVSSPIGGDFLTDCLLKSLESKGIKIKPRYSFKRKETRPGEFQVTGVNVPDTTESYKLFCQRMIVSDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQTLEIGSDRFKVPDVMFNPYIVQTIPGME-SYTDMLPSVRG----LPNMVIECISKCDVDVRRELYSSILLAGGTSSMQQLKERLEKDLVEESPQSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWLSKSEYEEHGASYIQRK 439          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|217074906|gb|ACJ85813.1| (unknown [Medicago truncatula] >gi|388519325|gb|AFK47724.1| unknown [Medicago truncatula])

HSP 1 Score: 289.271 bits (739), Expect = 6.114e-90
Identity = 171/454 (37.67%), Postives = 257/454 (56.61%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRK-AKIGLFGFERG--------TIPEYMPTT--YWRFQEQRVL-RDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSI----SPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIV-TATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS +G +      E D   K   +G + +++      K K      +G  ++G RR  +E+  PL +G V DWD V+ IW HAF +  +    K  P + A P+  ++ + +++AEL FE++   AL+LA++ +L++F++GR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  A    + F R         T+    P T   ++   QRV+  D+KE  C  P    D+ A  +I        +YELPDG  ++      +IP++L         SI    S A+++PS  G    LP MV  ++ K DVD+R+EL  +++L GG +  +   ERL+ +L E+ P A +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGESKNNIRNVDGDKAKGKRKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRECLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIAMKPRYSFRRKEIRPGEFQTVDLDFPNTSESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPTT-----SYELPDGQTIEIGADRFKIPDVLF--NPSLAHSIPGMESFAEIAPSVRG----LPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 443          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|922356678|ref|XP_003615307.2| (actin-related protein ARP4 [Medicago truncatula] >gi|657385204|gb|AES98265.2| actin-related protein ARP4 [Medicago truncatula])

HSP 1 Score: 289.271 bits (739), Expect = 6.383e-90
Identity = 171/454 (37.67%), Postives = 257/454 (56.61%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRK-AKIGLFGFERG--------TIPEYMPTT--YWRFQEQRVL-RDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSI----SPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIV-TATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS +G +      E D   K   +G + +++      K K      +G  ++G RR  +E+  PL +G V DWD V+ IW HAF +  +    K  P + A P+  ++ + +++AEL FE++   AL+LA++ +L++F++GR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  A    + F R         T+    P T   ++   QRV+  D+KE  C  P    D+ A  +I        +YELPDG  ++      +IP++L         SI    S A+++PS  G    LP MV  ++ K DVD+R+EL  +++L GG +  +   ERL+ +L E+ P A +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGESKNNIRNVDGDKAKGKRKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRECLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIAMKPRYSFRRKEIRPGEFQTVDLDFPNTSESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPTT-----SYELPDGQTIEIGADRFKIPDVLF--NPSLAHSIPGMESFAEIAPSVRG----LPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 443          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|1190945537|ref|XP_020866333.1| (actin-related protein 4 [Arabidopsis lyrata subsp. lyrata] >gi|297336118|gb|EFH66535.1| hypothetical protein ARALYDRAFT_472063 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 287.73 bits (735), Expect = 1.684e-89
Identity = 170/456 (37.28%), Postives = 257/456 (56.36%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKI-------------GLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISP-----ADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTA-TPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS IG V      + D D  K ++    S  E     K K      +G   +  RR  +E+  P+ +G V DWD V+ IW HAF+   + +  +  P + A P   ++ + +K+AEL FE++ + AL++A++P+L++F+TGR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  KI             G F  E   IP     +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    + +     P     AD+ PS  G    LP MV  ++ K DVD+R+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGIEAMDVDADSTKTNSNSEDSKTESE---KEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEH-PMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEIRAGEFQVEDVDIPNTT-ESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQMLEIGADRFKVPDVMF---NPSIVQTIPGMEKYADMIPSVRG----LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 439          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|21593375|gb|AAM65324.1| (unknown [Arabidopsis thaliana] >gi|1032302030|gb|OAP16355.1| ATARP4 [Arabidopsis thaliana])

HSP 1 Score: 287.345 bits (734), Expect = 2.482e-89
Identity = 170/456 (37.28%), Postives = 258/456 (56.58%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKI-------------GLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISP-----ADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTA-TPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS IG V      + D D  K ++    S  E     K K      +G   +  RR  +E+  P+ +G V DWD V+ IW HAF+   + +  +  P + A P   ++ + +K+AEL FE++ + AL++A++P+L++F+TGR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  KI             G F  E   IP+    +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    + +     P     AD+ PS  G    LP MV  ++ K DVD+R+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESE---KEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEH-PMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTT-ESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQTLEIGADRFKVPDVMF---NPSIVQTIPGMEKYADMIPSVRG----LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 439          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|727434013|ref|XP_010498232.1| (PREDICTED: actin-related protein 4-like [Camelina sativa])

HSP 1 Score: 287.345 bits (734), Expect = 2.841e-89
Identity = 171/456 (37.50%), Postives = 259/456 (56.80%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKI-------------GLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISP-----ADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTA-TPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS IG V      + D D  K ++  + ++ E     K K      +G   +  RR  +E+  P+ +G V DWD V+ IW HAF    + +  K  P + A P   S+ + +K+AEL FE++ + AL++A++P+L++F+TGR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  KI             G F  E   IP+    +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    + +     P     AD+ PS  G    LP MV  ++ K DVD+R+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDMDVDSTKANSEDSKTESE-----KEKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFRSCLMID-PKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIKPRYSFKRKEIRAGEFQVEDVDIPD-TKESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQTLEIGADRFKVPDVMF---NPSIVQTIPGMEKYADMIPSVRG----LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLVEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 437          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|565499798|ref|XP_006307538.1| (hypothetical protein CARUB_v10009163mg [Capsella rubella] >gi|482576249|gb|EOA40436.1| hypothetical protein CARUB_v10009163mg [Capsella rubella])

HSP 1 Score: 287.345 bits (734), Expect = 2.917e-89
Identity = 172/456 (37.72%), Postives = 256/456 (56.14%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKI-------------GLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISP-----ADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIV-TATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS IG V      + D D  K ++    S  E     K K      +G   +  RR  +E+  P+ +G V DWD V+ IW HAF    + +  K  P + A P   S+ + +K+AEL FE++ + AL++A++P+L++F+TGR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  KI             G F  E   IP+    +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    +       P     AD+ PS  G    LP MV  ++ K DVD+R+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKAESE---KDKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWDHAFRSCLMID-PKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEIRAGEFQVEDVEIPDTT-ESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQTLEIGADRFKVPDVMF---NPPIVQTIPGMEKYADMIPSVRG----LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 439          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|727607826|ref|XP_010477023.1| (PREDICTED: actin-related protein 4 [Camelina sativa])

HSP 1 Score: 287.345 bits (734), Expect = 3.030e-89
Identity = 171/456 (37.50%), Postives = 259/456 (56.80%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKI-------------GLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISP-----ADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTA-TPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS IG V      + D D  K ++  + ++ E     K K      +G   +  RR  +E+  P+ +G V DWD V+ IW HAF    + +  K  P + A P   S+ + +K+AEL FE++ + AL++A++P+L++F+TGR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  KI             G F  E   IP+    +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    + +     P     AD+ PS  G    LP MV  ++ K DVD+R+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVEGVEAMDMDVDSTKANSEDSKTESE-----KEKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFRSCLMID-PKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIKPRYSFKRKEIRAGEFQVEDVDIPDTT-ESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQTLEIGADRFKVPDVMF---NPSIVQTIPGMEKYADMIPSVRG----LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLVEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 437          
BLAST of EWM21911.1 vs. NCBI_GenBank
Match: gi|18394608|ref|NP_564051.1| (actin-related protein 4 [Arabidopsis thaliana] >gi|75297891|sp|Q84M92.1|ARP4_ARATH RecName: Full=Actin-related protein 4 >gi|21489918|tpg|DAA00027.1| TPA_exp: actin-related protein 4; AtARP4 [Arabidopsis thaliana] >gi|30102728|gb|AAP21282.1| At1g18450 [Arabidopsis thaliana] >gi|110736171|dbj|BAF00057.1| hypothetical protein [Arabidopsis thaliana] >gi|332191594|gb|AEE29715.1| actin-related protein 4 [Arabidopsis thaliana])

HSP 1 Score: 286.574 bits (732), Expect = 5.624e-89
Identity = 169/456 (37.06%), Postives = 259/456 (56.80%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGASSDVEGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKI-------------GLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISP-----ADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTA-TPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKK 437
            MY GDEV ++V DLG+ + + GYAGED PK VFPS IG V      + D D  K ++    S  E     K K+     +G   +  RR  +E+  P+ +G V DWD V+ IW HAF+   + +  +  P + A P   ++ + +K+AEL FE++ + AL++A++P+L++F+TGR++ +V DCG GST+  P+ DGYVL + V  S  GG++L   + + LES+  KI             G F  E   IP+    +Y  F ++ ++ D+K+S C +P    DD +  +I        +YELPDG  ++      ++P+++    + +     P     A++ PS  G    LP MV  ++ K DVD+R+EL  +++L GG S  +   ERL+ +L E+ P + +VK++ +    ERRFS WIGGSILASLGSFQQ+W SK+EYEE GA    +K
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESE---KEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEH-PMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTT-ESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT-----SYELPDGQTLEIGADRFKVPDVMF---NPSIVQTIPGMEKYAEMIPSVRG----LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 439          
The following BLAST results are available for this feature:
BLAST of EWM21911.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102257|gb|EWM21911.1|0.000e+0100.00actin-related protein [Nannochloropsis gaditana][more]
gi|674249064|gb|KFK41829.1|1.493e-9038.63hypothetical protein AALP_AA2G176800 [Arabis alpin... [more]
gi|217074906|gb|ACJ85813.1|6.114e-9037.67unknown [Medicago truncatula] >gi|388519325|gb|AFK... [more]
gi|922356678|ref|XP_003615307.2|6.383e-9037.67actin-related protein ARP4 [Medicago truncatula] >... [more]
gi|1190945537|ref|XP_020866333.1|1.684e-8937.28actin-related protein 4 [Arabidopsis lyrata subsp.... [more]
gi|21593375|gb|AAM65324.1|2.482e-8937.28unknown [Arabidopsis thaliana] >gi|1032302030|gb|O... [more]
gi|727434013|ref|XP_010498232.1|2.841e-8937.50PREDICTED: actin-related protein 4-like [Camelina ... [more]
gi|565499798|ref|XP_006307538.1|2.917e-8937.72hypothetical protein CARUB_v10009163mg [Capsella r... [more]
gi|727607826|ref|XP_010477023.1|3.030e-8937.50PREDICTED: actin-related protein 4 [Camelina sativ... [more]
gi|18394608|ref|NP_564051.1|5.624e-8937.06actin-related protein 4 [Arabidopsis thaliana] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8783rna8783Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications