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Properties
| Property Name | Value |
|---|
| Product | 30s ribosomal protein s15 |
| Orig transcript id | gnl|cribi|Naga_100070g2.4223.mrna |
| Orig protein id | gnl|cribi|Naga_100070g2.4223 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:139576..141783 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8777 ID=rna8777|Name=rna8777|organism=Nannochloropsis gaditana|type=mRNA|length=1354bp
GTGCATCGGCAGCGTCCTGTTCTGAATCGCAGTGTCCGAGTGGCAACAAG
GGCGTCATGGGCTCAATATCTTTGGCTCGTAGCCTCTGAGAGGACGGACC
TAGGAGAGGGATGGCGTGGGACAGAGCCCTTCCTCCAGGGGCGTCTTTTT
CTTGGCAAGTGAAGTCCACAATCCCGATCCCCCGTACATCCGCGCTATTT
GATTATGCCTCACGTTGTTCATGGGCGAGGCCATCGTCACTATCATGACT
AAATGCTCAAGAAAGCAGACGAAGCGCGTGCGTCCTCGTGACGGAGCTCA
GCATTGATGGGTCGTGTCTGGCGAGGGACTTTCCATGGGCACATGTCTTG
CCTGGCCGCGTCTTTAATGCTCCACAGTTGTAATGATTGATTCCACGCGC
GAAACTATGCTATCATTGTCCTCCTTTCGGGGAGCGTGCGGAATGGAAAA
GGATGCTCATATTTCTCGGTCTAACACTGTATTCTAAATTTTAGGGAAAT
TTTTCGTAGCTGGAGGTAAGACTACAATCTGGTCGGTCGTACTATCCACT
TAGGACATCATAAGAGTTGCAGGGTCCTGTCGAAGGCCAGCCCTGTCGCG
TGACACATAAAGGTGGAGGGCATGAAGACCTTCATCCGCCGGCTTTCGTC
GCGAGGCGAGGACGCGGCCTCGTCCCTCGCCTCCACTACGAGCGCTTCGA
GCTTGGCCGAGTCGCAGCGGAACCCTCCGCATGGGGGCGGAGTGAGCGGG
AGTCGGGTGAGCCTTGGCATGGCTTCGAAGGCTGTTGATTTCTCAGCGGC
TTGGAGCCGCATTCACGCGACCTTGGACGGGTTGACTTCGGGGGAAGGCC
TGCCGGCGGCAGAGGCCTCGTGGCTGGCCCTCTACACGGACGTCTACCGC
ATTTGCACCAGTCCACCTGTTGGGGGACTCGGCGGGCCTCCTGCGGCAGC
AGGGGCGGGGATAGCAGGCAGTGGGGGAGGGGTTCATCGGCGACTGTACG
ACCACTTGCACGACTTCTTGCATCAGCATTGCGATGCAGTGGTGGTGCGT
CTTCTCACGGCGGCCGAGTCTCACACGGCCTTCCAGTTTTTGACATTGTA
TGCAGATTTTTACACATTATATACGAAGGGGATGGAGACCGGCGGGAAAT
TGCTGGCCTACCTGGACCGGTTCTGGATCACCAAGCACCACCACAAGAAG
GGCATCGACCCCTCCCAAGGCGTCATGTTTATCGCCGAGCTCGTCCCGCT
CGTCTGGCGACAGCGTGTTCTCCGACGCGACATTTCAAACTTGCTGCAGC
GGGCCTTCAACGCCGTTGTGGCTGATCTGCGTGCCTGCCCCGCCCCCCCC
CCCC back to topprotein sequence of rna8777 >rna8777-protein ID=rna8777-protein|Name=rna8777|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGS
QLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAF
KLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDE
KMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVG
SSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKR
NKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLK
AAAEAQGVNA back to topmRNA from alignment at KK037250.1:139576..141783+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8777 ID=rna8777|Name=rna8777|organism=Nannochloropsis gaditana|type=mRNA|length=2208bp|location=Sequence derived from alignment at KK037250.1:139576..141783+ (Nannochloropsis gaditana)
TTGGACTGCGCGGGTGTCTTTCATGCGTCCGGGGCTCCTGGCTCTCATGC
TCGATCCATCCGTGCGTGCCTTCTGCGTTGATCGCACACTGGGGGTGCGA
TCAGGCGAAGGGGGATACCTTATTGGGTTCGAAAGCAAAGTGCCCTGCTT
CGTGTGGCTCGGTTGGctaggggagggcgacatcTTACCCCATTGCTGCT
GCCACTGCCAAATAAGATTGTATGGGGTTACAACGATTCTTTGGCAAGCT
GTGAATAGGTGCtcacttcttcttttttcctcttttggTTTTGCCAAGAA
AAATATATGGATGTAAAGTGTGTTTACATTGCGCGGTCAATTATGTCCGC
AGGACGCACGAGTATCTTGCTATTTCTCACGCTCCAGGCTACTCGTTGAT
AGCCCTCACAGGATCCAAATCATGCTGTTGCAAAAAGGAGTACTGGTGAG
CTGTTTGCTCACTTGCGCAGTTGCCTATGTACCGCCCATGCGTGGTCCTC
GTAGTACGGTGAGTCgtagaggggaagaaacggAATGTCGGGGCGTTGGG
GCGATGCTGAAAAGCGGCCATCATGAAGATGTAACgctgaagaggaaatg
aagaGCTGGAAATATTCGATAAAAATATATGCAGTAGGTGTGTGTATTGA
ACGGATTTTGGTGATTTTTCAAGGAATGTGAGCACCGATCCCATTCGGAG
GGTGCAGTAAAACCCGCAGTTTCCGGACAACTAACTCCTTGGACGTCTGT
TTATGTTATCTGACATCGTTCATGTCAATGCAACAGGCAGTATCAAAGTC
AGTCAAGTTGCGTCTCTATGCCTCGGGGCCCGAGGCTCCTGGAGGCTCGC
AACTGGTGccggaggacgatgaggagatGACGGAGGGATTCACTGAGATA
GACGGCGTCGTGTTCGAGGGCGATTTTGAGGATGACTCGGTCAAGCCTTC
GTTGACATCCTTGCTAGAGGATGTAGCCGATGATGGGAGCGAGGCATTCA
AGTTGGATTCCGAcgactccttcttctccatccccgaCTACGTGCCCTCC
GAGCTCCCGGACCTGGCAGCTCTCGGATCAGGACTGGAGAGCAAGCGGGA
CATGATGAATGAGTTCGTTGAGGGCGGAGAATTCGACCCGAATGACGAGA
AAATGTATCGGCTGCTTGGCTTGGACGCGCTCGACGAGAAGAAGACCCGC
AAGAGTCCCGAGGACTTCACCCTTCCTGGTGGCTACCTTCTCGAGCAGGC
TCGCCTTGAGGTCGCACAGAAATACCAGAAGCATGACAAGGATGTGGGCT
CATCTGCTGTACAGGTGGCACAATTCACACAGACGATCAGCTACTTGACC
AAGCACGTGCAAGTGAATCCCCGAGACTACTCCGCCCGACGGGGCCTGAT
TCGGGCCGTGAACATACGCCGGAAGCTCTTGAACTACATCTCGAAGAGGA
ACAAGCCATTTGCACTCAAGCTGGCTGCTGAACTGGGAATCCGCTTCCGC
CCACCTGATGGCGCGCGATCTAAGTTTGAAATGTATCGTTTCTACAAAAA
TACGAAGAGCAAGAAGGCCAAGAATATGCAGTCCATTGCGGACCTGAAGG
CAGCTGCCGAGGCTCAGGGTGTGAATGCATGAGCAGGAGGTCAGCTGTCA
TATCCATAAGAAGGACGTCGATACTTCTATCACATAACGCGCGTTGTGAA
ACCATGGTCTCACACGCATACCATATCAGGTCCTGAGTATTGATTATATG
TGAGTGTTCTTCTGTGAGGGCTCTATGCGTGGCGAGACTATTCGAATGCA
AGCTGACGGCAAAAGTCGAGAGAGAGGCATGCATGCTACCACCCTCGTCA
ACACATTCCTCTTGACATGTCATACATACACTCATGGGGTTTTTTGCAAA
CTTCTTGGacgagggaaaaaagagcggCAAGTGGATGACCAGGAGTCCCT
GCTGCGCAGTGTGCAAGCAGACACGAAGAGattgaagaaaaagcaatTAA
GCTCACTATTTCATATGTTGTATTGATTTTTTGGGGCTAATGAATTTCTC
GGTCTGAATGGACTAGCAATTATTTCAAACATCATCCTCCATTGTTGATT
TAGAGcttggagaagacgaggaagttGAGTTTGAGAGGCAGCATGAAGAA
CAGTCGCAGGACGAAGACGTGaatgatgaagaagagatgGAACGCGCagt
agagaggg back to topCoding sequence (CDS) from alignment at KK037250.1:139576..141783+ >rna8777 ID=rna8777|Name=rna8777|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at KK037250.1:139576..141783+ (Nannochloropsis gaditana)
ATGCTGTTGCAAAAAGGAGTACTGGTGAGCTGTTTGCTCACTTGCGCAGT
TGCCTATGTACCGCCCATGCGTGGTCCTCGTAGTACGGTGATATCAAAGT
CAGTCAAGTTGCGTCTCTATGCCTCGGGGCCCGAGGCTCCTGGAGGCTCG
CAACTGGTGccggaggacgatgaggagatGACGGAGGGATTCACTGAGAT
AGACGGCGTCGTGTTCGAGGGCGATTTTGAGGATGACTCGGTCAAGCCTT
CGTTGACATCCTTGCTAGAGGATGTAGCCGATGATGGGAGCGAGGCATTC
AAGTTGGATTCCGAcgactccttcttctccatccccgaCTACGTGCCCTC
CGAGCTCCCGGACCTGGCAGCTCTCGGATCAGGACTGGAGAGCAAGCGGG
ACATGATGAATGAGTTCGTTGAGGGCGGAGAATTCGACCCGAATGACGAG
AAAATGTATCGGCTGCTTGGCTTGGACGCGCTCGACGAGAAGAAGACCCG
CAAGAGTCCCGAGGACTTCACCCTTCCTGGTGGCTACCTTCTCGAGCAGG
CTCGCCTTGAGGTCGCACAGAAATACCAGAAGCATGACAAGGATGTGGGC
TCATCTGCTGTACAGGTGGCACAATTCACACAGACGATCAGCTACTTGAC
CAAGCACGTGCAAGTGAATCCCCGAGACTACTCCGCCCGACGGGGCCTGA
TTCGGGCCGTGAACATACGCCGGAAGCTCTTGAACTACATCTCGAAGAGG
AACAAGCCATTTGCACTCAAGCTGGCTGCTGAACTGGGAATCCGCTTCCG
CCCACCTGATGGCGCGCGATCTAAGTTTGAAATGTATCGTTTCTACAAAA
ATACGAAGAGCAAGAAGGCCAAGAATATGCAGTCCATTGCGGACCTGAAG
GCAGCTGCCGAGGCTCAGGGTGTGAATGCATGAATGCTGTTGCAAAAAGG
AGTACTGGTGAGCTGTTTGCTCACTTGCGCAGTTGCCTATGTACCGCCCA
TGCGTGGTCCTCGTAGTACGGTGATATCAAAGTCAGTCAAGTTGCGTCTC
TATGCCTCGGGGCCCGAGGCTCCTGGAGGCTCGCAACTGGTGccggagga
cgatgaggagatGACGGAGGGATTCACTGAGATAGACGGCGTCGTGTTCG
AGGGCGATTTTGAGGATGACTCGGTCAAGCCTTCGTTGACATCCTTGCTA
GAGGATGTAGCCGATGATGGGAGCGAGGCATTCAAGTTGGATTCCGAcga
ctccttcttctccatccccgaCTACGTGCCCTCCGAGCTCCCGGACCTGG
CAGCTCTCGGATCAGGACTGGAGAGCAAGCGGGACATGATGAATGAGTTC
GTTGAGGGCGGAGAATTCGACCCGAATGACGAGAAAATGTATCGGCTGCT
TGGCTTGGACGCGCTCGACGAGAAGAAGACCCGCAAGAGTCCCGAGGACT
TCACCCTTCCTGGTGGCTACCTTCTCGAGCAGGCTCGCCTTGAGGTCGCA
CAGAAATACCAGAAGCATGACAAGGATGTGGGCTCATCTGCTGTACAGGT
GGCACAATTCACACAGACGATCAGCTACTTGACCAAGCACGTGCAAGTGA
ATCCCCGAGACTACTCCGCCCGACGGGGCCTGATTCGGGCCGTGAACATA
CGCCGGAAGCTCTTGAACTACATCTCGAAGAGGAACAAGCCATTTGCACT
CAAGCTGGCTGCTGAACTGGGAATCCGCTTCCGCCCACCTGATGGCGCGC
GATCTAAGTTTGAAATGTATCGTTTCTACAAAAATACGAAGAGCAAGAAG
GCCAAGAATATGCAGTCCATTGCGGACCTGAAGGCAGCTGCCGAGGCTCA
GGGTGTGAATGCATGA back to top
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