EWM21909.1, cds8747 (CDS) Nannochloropsis gaditana

Overview
NameEWM21909.1
Unique Namecds8747
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:139997..140087 +
Alignment locationKK037250.1:140366..141207 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21909.1
Product30s ribosomal protein s15
Orig transcript idgnl|cribi|Naga_100070g2.4223.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:139997..140087 +
KK037250.1supercontigKK037250.1:140366..141207 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR005290Ribosomal_S15_bac-type
IPR009068S15_NS1_RNA-bd
IPR000589Ribosomal_S15
Homology
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|585102255|gb|EWM21909.1| (30s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310
            MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA
Sbjct:    1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|585102254|gb|EWM21908.1| (30s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 308/310 (99.35%), Postives = 309/310 (99.68%), Query Frame = 0
Query:    1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310
            MLLQKGVLVSCLLTCAVAYVPPMRGPRST +SKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA
Sbjct:    1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTAVSKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|676379861|ref|XP_009033209.1| (hypothetical protein AURANDRAFT_52388 [Aureococcus anophagefferens] >gi|323456256|gb|EGB12123.1| hypothetical protein AURANDRAFT_52388 [Aureococcus anophagefferens])

HSP 1 Score: 99.7525 bits (247), Expect = 1.624e-21
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 0
Query:  180 LLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAK 291
            + +  R E   K+ +HD D GSS +Q+A FT  I ++T+HV  NP+D+++RRGL+  V+ RR+LLNY   R+   A+KLAA+LG+RFR       + E YR Y    +KK K
Sbjct:   95 ICDGERAEYKAKFPRHDNDCGSSEIQIALFTARIKHITQHVVDNPKDHASRRGLLTLVSKRRRLLNYYHSRSPEKAVKLAADLGVRFRFKSALPDRAEKYRQYTIAANKKKK 206          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|299472709|emb|CBN80277.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.138 bits (248), Expect = 2.442e-21
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 0
Query:  155 LLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSK 288
            ++G++  D+       +D      YL + A      K++K+D+D GS  + VA  T+ I YLTKH+Q +P DY +RRGLI  VN RR+ LNY  K+     L++ A LGIRFRP    R + + Y  Y NTKSK
Sbjct:   78 VMGVETQDQ-------QDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFKKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 204          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|1210520956|dbj|GAX20189.1| (small subunit ribosomal protein S15 [Fistulifera solaris])

HSP 1 Score: 91.2781 bits (225), Expect = 1.657e-18
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0
Query:  190 QKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMY-RFYKNTKSKK 289
            +K++ HDKD GS   QVA  T+ ISYLT H+Q++P+D+S RRGL+  VN RR+LLNY+S  +      L A LGIR + P    S+ E Y RF K   ++K
Sbjct:   89 EKHRLHDKDTGSPEYQVAGMTERISYLTSHLQMHPKDFSTRRGLVALVNKRRRLLNYLSTEDVDRYKALIASLGIRHKAPGTVPSREETYARFPKQKAARK 189          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|1210515602|dbj|GAX25495.1| (small subunit ribosomal protein S15 [Fistulifera solaris])

HSP 1 Score: 90.8929 bits (224), Expect = 2.351e-18
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 0
Query:  190 QKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMY-RFYKNTKSKK 289
            +K++ HDKD GS   QVA  T+ ISYLT H+Q++P+D+S RRGL+  VN RR+LLNY+S  +      L A LGIR + P    S+ E Y RF K    +K
Sbjct:   89 EKHRLHDKDTGSPEYQVAGMTERISYLTNHLQMHPKDFSTRRGLVALVNKRRRLLNYLSTEDVDRYKALIASLGIRHKAPGTVPSREETYARFPKQKAVRK 189          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|219114967|ref|XP_002178279.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410014|gb|EEC49944.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.1149 bits (209), Expect = 2.514e-17
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0
Query:  187 EVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIR 265
            E+  K+++H+KD GS   QVA  T+ I+YLTKH+Q +P+D+S RRGL+  VN RR+LLNY+S+ +     +L A LG+R
Sbjct:    7 ELRAKHRRHEKDTGSPEYQVAGMTERIAYLTKHLQQHPKDFSTRRGLVALVNKRRRLLNYLSREDTGRYTELVASLGVR 85          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|1072230342|gb|OEU15075.1| (Ribosomal_S15-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 87.0409 bits (214), Expect = 7.618e-17
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 0
Query:  176 PGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPP 269
            P  Y  +Q   ++  + ++HDKD GS   QVA  T+ ISYLTKH+Q +P+D+S RRGL+  VN RR+LLNY+   ++   + + A LGIR + P
Sbjct:   87 PAWYESQQRLEKLRSENRRHDKDTGSPEFQVAGMTERISYLTKHLQQHPKDFSTRRGLVAMVNKRRRLLNYLYTEDQEKYISIIASLGIRHKAP 180          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|515341924|ref|WP_016859899.1| (30S ribosomal protein S15 [Fischerella muscicola])

HSP 1 Score: 83.1889 bits (204), Expect = 1.159e-16
Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 0
Query:  180 LLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIR 265
            L +Q +LE+  +YQ HD D GS+ VQVA  T+ I+ L++H+Q N +D+S+RRGL++ +  R++LL+YI K ++     L A LGIR
Sbjct:    3 LTQQRKLEIISQYQVHDTDTGSADVQVAMLTERINRLSEHLQANKKDFSSRRGLLKLIGQRKRLLSYIQKDSREHYQALIARLGIR 88          
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|515887940|ref|WP_017318523.1| (30S ribosomal protein S15 [Mastigocladopsis repens])

HSP 1 Score: 82.8037 bits (203), Expect = 2.006e-16
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 0
Query:  180 LLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIR 265
            L +Q + E+  +YQ H+ D GSS VQVA  T+ I+ L++H+QVN +D+S+RRGL++ +  R++LL+YI K N+     L   LGIR
Sbjct:    3 LTQQRKQEIISQYQVHETDTGSSDVQVAMLTERINRLSQHLQVNKKDHSSRRGLLKLIGQRKRLLSYIQKENRERYQGLIGRLGIR 88          
The following BLAST results are available for this feature:
BLAST of EWM21909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102255|gb|EWM21909.1|0.000e+0100.0030s ribosomal protein s15 [Nannochloropsis gaditan... [more]
gi|585102254|gb|EWM21908.1|0.000e+099.3530s ribosomal protein s15 [Nannochloropsis gaditan... [more]
gi|676379861|ref|XP_009033209.1|1.624e-2143.75hypothetical protein AURANDRAFT_52388 [Aureococcus... [more]
gi|299472709|emb|CBN80277.1|2.442e-2141.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210520956|dbj|GAX20189.1|1.657e-1847.52small subunit ribosomal protein S15 [Fistulifera s... [more]
gi|1210515602|dbj|GAX25495.1|2.351e-1847.52small subunit ribosomal protein S15 [Fistulifera s... [more]
gi|219114967|ref|XP_002178279.1|2.514e-1749.37predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072230342|gb|OEU15075.1|7.618e-1744.68Ribosomal_S15-domain-containing protein [Fragilari... [more]
gi|515341924|ref|WP_016859899.1|1.159e-1645.3530S ribosomal protein S15 [Fischerella muscicola][more]
gi|515887940|ref|WP_017318523.1|2.006e-1645.3530S ribosomal protein S15 [Mastigocladopsis repens... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8777rna8777Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications