EWM21909.1, cds8747 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|585102255|gb|EWM21909.1| (30s ribosomal protein s15 [Nannochloropsis gaditana]) HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query: 1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310
MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA
Sbjct: 1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|585102254|gb|EWM21908.1| (30s ribosomal protein s15 [Nannochloropsis gaditana]) HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0 Identity = 308/310 (99.35%), Postives = 309/310 (99.68%), Query Frame = 0
Query: 1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTVISKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310
MLLQKGVLVSCLLTCAVAYVPPMRGPRST +SKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA
Sbjct: 1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTAVSKSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAAAEAQGVNA 310
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|676379861|ref|XP_009033209.1| (hypothetical protein AURANDRAFT_52388 [Aureococcus anophagefferens] >gi|323456256|gb|EGB12123.1| hypothetical protein AURANDRAFT_52388 [Aureococcus anophagefferens]) HSP 1 Score: 99.7525 bits (247), Expect = 1.624e-21 Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 0
Query: 180 LLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAK 291
+ + R E K+ +HD D GSS +Q+A FT I ++T+HV NP+D+++RRGL+ V+ RR+LLNY R+ A+KLAA+LG+RFR + E YR Y +KK K
Sbjct: 95 ICDGERAEYKAKFPRHDNDCGSSEIQIALFTARIKHITQHVVDNPKDHASRRGLLTLVSKRRRLLNYYHSRSPEKAVKLAADLGVRFRFKSALPDRAEKYRQYTIAANKKKK 206
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|299472709|emb|CBN80277.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.138 bits (248), Expect = 2.442e-21 Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 0
Query: 155 LLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSK 288
++G++ D+ +D YL + A K++K+D+D GS + VA T+ I YLTKH+Q +P DY +RRGLI VN RR+ LNY K+ L++ A LGIRFRP R + + Y Y NTKSK
Sbjct: 78 VMGVETQDQ-------QDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFKKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 204
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|1210520956|dbj|GAX20189.1| (small subunit ribosomal protein S15 [Fistulifera solaris]) HSP 1 Score: 91.2781 bits (225), Expect = 1.657e-18 Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0
Query: 190 QKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMY-RFYKNTKSKK 289
+K++ HDKD GS QVA T+ ISYLT H+Q++P+D+S RRGL+ VN RR+LLNY+S + L A LGIR + P S+ E Y RF K ++K
Sbjct: 89 EKHRLHDKDTGSPEYQVAGMTERISYLTSHLQMHPKDFSTRRGLVALVNKRRRLLNYLSTEDVDRYKALIASLGIRHKAPGTVPSREETYARFPKQKAARK 189
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|1210515602|dbj|GAX25495.1| (small subunit ribosomal protein S15 [Fistulifera solaris]) HSP 1 Score: 90.8929 bits (224), Expect = 2.351e-18 Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 0
Query: 190 QKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMY-RFYKNTKSKK 289
+K++ HDKD GS QVA T+ ISYLT H+Q++P+D+S RRGL+ VN RR+LLNY+S + L A LGIR + P S+ E Y RF K +K
Sbjct: 89 EKHRLHDKDTGSPEYQVAGMTERISYLTNHLQMHPKDFSTRRGLVALVNKRRRLLNYLSTEDVDRYKALIASLGIRHKAPGTVPSREETYARFPKQKAVRK 189
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|219114967|ref|XP_002178279.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410014|gb|EEC49944.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 85.1149 bits (209), Expect = 2.514e-17 Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0
Query: 187 EVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIR 265
E+ K+++H+KD GS QVA T+ I+YLTKH+Q +P+D+S RRGL+ VN RR+LLNY+S+ + +L A LG+R
Sbjct: 7 ELRAKHRRHEKDTGSPEYQVAGMTERIAYLTKHLQQHPKDFSTRRGLVALVNKRRRLLNYLSREDTGRYTELVASLGVR 85
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|1072230342|gb|OEU15075.1| (Ribosomal_S15-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 87.0409 bits (214), Expect = 7.618e-17 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 0
Query: 176 PGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPP 269
P Y +Q ++ + ++HDKD GS QVA T+ ISYLTKH+Q +P+D+S RRGL+ VN RR+LLNY+ ++ + + A LGIR + P
Sbjct: 87 PAWYESQQRLEKLRSENRRHDKDTGSPEFQVAGMTERISYLTKHLQQHPKDFSTRRGLVAMVNKRRRLLNYLYTEDQEKYISIIASLGIRHKAP 180
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|515341924|ref|WP_016859899.1| (30S ribosomal protein S15 [Fischerella muscicola]) HSP 1 Score: 83.1889 bits (204), Expect = 1.159e-16 Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 180 LLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIR 265
L +Q +LE+ +YQ HD D GS+ VQVA T+ I+ L++H+Q N +D+S+RRGL++ + R++LL+YI K ++ L A LGIR
Sbjct: 3 LTQQRKLEIISQYQVHDTDTGSADVQVAMLTERINRLSEHLQANKKDFSSRRGLLKLIGQRKRLLSYIQKDSREHYQALIARLGIR 88
BLAST of EWM21909.1 vs. NCBI_GenBank
Match: gi|515887940|ref|WP_017318523.1| (30S ribosomal protein S15 [Mastigocladopsis repens]) HSP 1 Score: 82.8037 bits (203), Expect = 2.006e-16 Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 0
Query: 180 LLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIR 265
L +Q + E+ +YQ H+ D GSS VQVA T+ I+ L++H+QVN +D+S+RRGL++ + R++LL+YI K N+ L LGIR
Sbjct: 3 LTQQRKQEIISQYQVHETDTGSSDVQVAMLTERINRLSQHLQVNKKDHSSRRGLLKLIGQRKRLLSYIQKENRERYQGLIGRLGIR 88 The following BLAST results are available for this feature:
BLAST of EWM21909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|