rna8767, rna8767 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8767
Unique Name	rna8767
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2013
Alignment location	KK037250.1:119210..119666 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100220g10.7208.mrna
Orig protein id	gnl\|cribi\|Naga_100220g10.7208
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:119210..119666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100220g10	gene8499	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8767	rna8767-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21933.1	cds8737	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:119210..119666+
coding sequence from alignment at KK037250.1:119210..119666+

mRNA sequence

>rna8767 ID=rna8767|Name=rna8767|organism=Nannochloropsis gaditana|type=mRNA|length=2013bp
TTGCAAAGAGCCTGGGACAGCATAGAATGACATAACAATTACAGCCATAC
ACTACACGCATTATGCGTATCTATCAGCAAGAATGGTCGATCCGAATCCC
AACATCGAGGGCAATGGCAAACTCTTGTAGACCAAACGGAAGGCTTGTAC
GCGACACCCACACTGCAAAAAATGCACCTCTTGCCATTTAGTACTCCTCT
ATATTGCAATGAAGCGTTCGAGAATGAAATGGCGTGTAGGTAATCGTGTT
TGTGTGCATGTGTGTCTTCCATGAATTTGGTTTTCAATCCAGGGTGGTAG
AAGTGTGTAATTCGCCGATGTGAGAAATGCGTCATATTTCGAATGACAGG
TAATAACACACACGGCGGACACATTACCCCTCGTATTAAATGCTCATATC
TTTGCGAATAATCAGGTTTTACTCAGGGCAAACAAGTGTAACGCACAGGA
AAGAGACTTGTTCCAAGCTGGGTGGTAGCAGAAGGAGGTCGGTAGCAGCA
GAGCTCTACATTCTTACGTCAAGTGATATTTAAATAGCGGTATACAAGCG
TCCTTGTCTATATTTTTTATGAATATATGATGTTCCTACTTTGGCAAATG
CAATGAAAATCAGTACTTCGGAGAGAATGAAGGACGAAGGTAAAAGACTG
CCGCATAATAACAAAAGTGATAGAAGGTTCGTCACAAACAAGTTCCACAA
GCGAGGTTTGAGCAGTCTTCGTGGCAGTTTTCAGGGTAATACAGCGCGAA
GCGAGAGGCTATTTAAGCTTTTGTCGCAAACCTCATCCCTGAAACCACAT
GGTGGCAAAAGGCGGTCTTTGAACATGCCAGAGACTGGTGTCAAAGATTC
TGGCAGAAGTGACGTGTGCCAATCGATGAACGACAAAAATTTGCGCCGCT
CAACACGCTGTGCCCATGACAAAATTGATGATTGGATCAAAATTCCTGTC
GAAGTTCCCATTAGCGATGCTGGGAACAGAAGTGAGCTGATAGAAGGATC
AGTTTTTTTATCGTCGGAGTCTGGTCAATTGTACAAAAAAAGTGGAAAAG
CATGTGTTGAGGCTGCATTCAATGGTTCCTATTATACCTACTTGGTACCC
GAGGAGTCTTTGCCAATGTTAACCGTTGACCATCCGCATTATATCGCCGA
AGTAGATATGATGAATAAAAGCAAAGAAAAGCAGATTGAAGCTAGCGCGA
TCTTCTCCAAGCTACTTCAGGTCAACGTGGATGCCCACCACGAAATGGAA
ATGTTAATGCTTGAGAAAGAGTATGAAAGGGAGCTTTTAACACTCAAAAA
TCAAAGTCAAGATGCCATTCTACAGGTCATGAAGGATGTGCAGGACTTAG
GACACGAATCAATCGCTGTTACACGGAACGTAAGTAACAGATCTCTTCAG
GTCTGTGAAGACAGGTCGTTAAGGACTCCAATGTACAATCCTCCACCAGA
TTCTGGTGCTTGTCGAATTCCTCATGAACGTTGTGATTTGGACGATATTA
AGAGCAGCTGGCATACTGAAATGTCGGCACAATCTGCGAAAGGGGTTGCG
ACCAGCTACTATCGAATGCGAGATTCTTGCTCAAGCATCACAGGTGCAGG
TGAATGTGCTGGTAATAAAAAAATCGGAGTGCAGAAATTAGAGCATGAGT
CTGACAGTTGTAACGATGATGAGTATGTAGACATTTTGGACATATTTCAT
CGTAGAATATAGCTGGAAAAGCTCGCTAACAGATCGCCGCAATCCCATGA
CATAAAGAGAGATAGGAAAGTGACGGATCTAAGCTAAGCGCCAGGAAGAA
AGGTTCAGAAGAACAATCAGCAAGTAAACGTGAGGAGTACAAAAGGGCCT
ATTATCAAGCAACGACATGTCTAATACGCCAAAAATCAACAATGCAATGT
TCGATGCTGATCCAGAGATTTTTTTTGGGGCCCCCCTAAAGTCACACAAA
AAGATATCGTGTTAGTACGTATTTCAAGCCAATCTGTATGACGATATTCA
GCTCGAGAGGAGG

protein sequence of rna8767

>rna8767-protein ID=rna8767-protein|Name=rna8767|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MSKKPRNQIPNGCHSLLDNRILFSTTASTCSFCTTYRTCLASHILKEIPI
MGSDYELISRAFMLLYLKQSSNCEMLTVWVHFTMWYCRKTKFLMCGVPLD
PV

mRNA from alignment at KK037250.1:119210..119666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8767 ID=rna8767|Name=rna8767|organism=Nannochloropsis gaditana|type=mRNA|length=457bp|location=Sequence derived from alignment at KK037250.1:119210..119666+ (Nannochloropsis gaditana)
ATGAGCAAGAAGCCTCGTAATCAAATTCCAAACGGGTGTCACTCGTTACT
GGACAACAGGATTCTATTCAGTACCACAGCTTCAACATGCTCCTTTTGTA
CCACATGTTGACAATTCCTACTCCTTGCATGCATACCGCTGCGCCACAAC
ATTTTGACTGCCATCTTAGCTCTACTCTCATCCCCGGACAATACAAAACA
CCACTGTCAGACCCCTCAAAATCCCCCCCTTCACTCCGTCATTTCGCGCG
AAAGACAGAACCTGTTTAGCGTCACATATCCTTAAGGAGATTCCAATTAT
GGGTTCTGATTATGAGTTAATCTCTAGAGCATTCATGCTGCTTTACCTTA
AACAATCAAGTAATTGTGAAATGTTGACGGTTTGGGTGCATTTCACCATG
TGGTATTGTAGGAAAACGAAGTTTTTAATGTGCGGGGTCCCTTTAGACCC
GGTCTAG

Coding sequence (CDS) from alignment at KK037250.1:119210..119666+

>rna8767 ID=rna8767|Name=rna8767|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at KK037250.1:119210..119666+ (Nannochloropsis gaditana)
ATGAGCAAGAAGCCTCGTAATCAAATTCCAAACGGGTGTCACTCGTTACT
GGACAACAGGATTCTATTCAGTACCACAGCTTCAACATGCTCCTTTTGTA
CCACATACAGAACCTGTTTAGCGTCACATATCCTTAAGGAGATTCCAATT
ATGGGTTCTGATTATGAGTTAATCTCTAGAGCATTCATGCTGCTTTACCT
TAAACAATCAAGTAATTGTGAAATGTTGACGGTTTGGGTGCATTTCACCA
TGTGGTATTGTAGGAAAACGAAGTTTTTAATGTGCGGGGTCCCTTTAGAC
CCGGTCTAGATGAGCAAGAAGCCTCGTAATCAAATTCCAAACGGGTGTCA
CTCGTTACTGGACAACAGGATTCTATTCAGTACCACAGCTTCAACATGCT
CCTTTTGTACCACATACAGAACCTGTTTAGCGTCACATATCCTTAAGGAG
ATTCCAATTATGGGTTCTGATTATGAGTTAATCTCTAGAGCATTCATGCT
GCTTTACCTTAAACAATCAAGTAATTGTGAAATGTTGACGGTTTGGGTGC
ATTTCACCATGTGGTATTGTAGGAAAACGAAGTTTTTAATGTGCGGGGTC
CCTTTAGACCCGGTCTAG

Synonyms

Publications