EWM21949.1, cds8724 (CDS) Nannochloropsis gaditana

Overview
NameEWM21949.1
Unique Namecds8724
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:82607..82779 -
Alignment locationKK037250.1:82166..82321 -
Alignment locationKK037250.1:81711..81963 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21949.1
Productprotein of unknown function DUF2059
Orig transcript idgnl|cribi|Naga_100157g7.52.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:82607..82779 -
KK037250.1supercontigKK037250.1:82166..82321 -
KK037250.1supercontigKK037250.1:81711..81963 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018637DUF2059
Homology
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|553179858|ref|XP_005852774.1| (hypothetical protein NGA_0685100 [Nannochloropsis gaditana CCMP526] >gi|422295757|gb|EKU23056.1| hypothetical protein NGA_0685100 [Nannochloropsis gaditana CCMP526] >gi|585102301|gb|EWM21949.1| protein of unknown function DUF2059 [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 1.623e-140
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MASRLVHVSLALGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQERRAKRGELNDLPETIKLPPQSQKLKDGVYMGNGLSNAQREEM 193
            MASRLVHVSLALGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQERRAKRGELNDLPETIKLPPQSQKLKDGVYMGNGLSNAQREEM
Sbjct:    1 MASRLVHVSLALGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQERRAKRGELNDLPETIKLPPQSQKLKDGVYMGNGLSNAQREEM 193          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|501124751|ref|WP_012173848.1| (DUF2059 domain-containing protein [Desulfococcus oleovorans] >gi|158509262|gb|ABW66229.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3])

HSP 1 Score: 78.5666 bits (192), Expect = 3.159e-15
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 0
Query:   17 LILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNL-ETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQERRAKRGE 158
             I+C++ T   AL+DT  NR K A +Y+   P  + M+ MA++  + +P P+ RE+    L + LD++   +I + +M KHFT +EL+ L + Y + VGKS M K G Y  ++ P IQ  ++      ++   E  R+ +  E
Sbjct:    8 FIICIAATAF-ALEDTPSNRQKEAARYLKTTPPADMMKDMAQKVSMNLP-PENREEFKALLTKHLDLEAFTKIMKDSMEKHFTADELKALADFYGSPVGKSAMNKFGDYMGDIMPAIQAELLKAHAEAIKENAEANRQKQNAE 148          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|501521976|ref|WP_012529913.1| (DUF2059 domain-containing protein [Geobacter bemidjiensis] >gi|197087230|gb|ACH38501.1| hypothetical protein Gbem_1483 [Geobacter bemidjiensis Bem])

HSP 1 Score: 78.1814 bits (191), Expect = 4.892e-15
Identity = 48/142 (33.80%), Postives = 85/142 (59.86%), Query Frame = 0
Query:   15 TLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLET--LDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQ-EVMMPVMESNVEFYQEQERR 153
            T++++ L +++  AL+DT  NR+  A++Y+   P ++ ++  A Q  +   DP ER Q  ++L T  LD++ + +  +  MVKHFT +EL+ L + Y +  GKS M K GAY A++ P IQ E++  + ++N E    +E +
Sbjct:    7 TIVLVLLMVSVAFALEDTSLNRLTQAERYLEVTPPKDLLQDAAEQMAMNF-DPSER-QAFKDLMTKHLDIEALTKTMKDTMVKHFTADELKALADFYGSVEGKSSMKKFGAYMADVMPSIQAEMLKAISKANREVADTEEEK 146          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|1125137979|gb|OLA95567.1| (hypothetical protein AUH19_09840 [Verrucomicrobia bacterium 13_2_20CM_55_10])

HSP 1 Score: 70.8626 bits (172), Expect = 2.452e-12
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 0
Query:   12 LGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLET-LDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQ-EVM 136
                +L L  S   V    DT + R   A++Y+   P +   E MA +  + +P P +R+Q+ R +   LD+  + +    AMVKHFTTEEL+ L + Y + + KS   K GAY A++ P +Q EVM
Sbjct:    6 FALAILTLFTSSAFVLGATDTPETRRHEAERYLQATPPKALFEDMADKMTMNLP-PDQRQQVKRMMTAELDIAALTKAMTDAMVKHFTTEELKALADFYGSPIEKSATQKFGAYMADVMPALQAEVM 131          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|505929475|ref|WP_015720644.1| (DUF2059 domain-containing protein [Geobacter sp. M18] >gi|320126234|gb|ADW13794.1| Protein of unknown function DUF2059 [Geobacter sp. M18])

HSP 1 Score: 70.8626 bits (172), Expect = 2.471e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   28 ALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNL-ETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQE 134
             L DTV NR    ++Y+   P  E  + M  +   ++P P+ RE     + + LD++ + + T  AMVKHFT +EL  L N Y + VGKS M K   Y A++ P +QE
Sbjct:   22 CLDDTVANRKVQVERYLKAVPPAELFQDMTEKLATQVP-PENREMFKATMSKNLDLNAITKATSDAMVKHFTADELAALANFYGSPVGKSAMKKFADYMADVMPTLQE 128          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|506318248|ref|WP_015838023.1| (hypothetical protein [Geobacter sp. M21] >gi|251776218|gb|ACT18799.1| conserved hypothetical protein [Geobacter sp. M21])

HSP 1 Score: 68.5514 bits (166), Expect = 1.668e-11
Identity = 43/132 (32.58%), Postives = 77/132 (58.33%), Query Frame = 0
Query:   25 MVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLET--LDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQ-EVMMPVMESNVEFYQEQERR 153
            M  AL+DT  NR+  A++Y+   P ++  +  A Q  +   DP +R Q  ++L T  LD++ + +  +  MV+HFT +EL+ L + Y +  GKS M K GAY A++ P ++ E++  + ++N E    +E++
Sbjct:    1 MAYALEDTSFNRLTQAERYLGVAPPKDLFQDAAEQMAMNF-DPSQR-QAFKDLITKHLDIEALTKTMKDTMVRHFTADELKALADFYGSVEGKSSMKKFGAYMADVMPSVKAEMVKAIAKANREVADIEEKK 130          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|1155015469|ref|WP_078920789.1| (DUF2059 domain-containing protein [Thiothrix eikelboomii] >gi|1152191617|emb|SKA68432.1| hypothetical protein SAMN02745130_00287 [Thiothrix eikelboomii])

HSP 1 Score: 66.2402 bits (160), Expect = 2.139e-10
Identity = 39/122 (31.97%), Postives = 67/122 (54.92%), Query Frame = 0
Query:   16 LLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMM 137
            L I  L+ T+  AL+D ++NR   A +Y+  NP +   + +A Q +  +P+ + +  L    + LD+  + +  + A++ HFT  ELE L N YS    K+ +AK+  Y AE+ P +Q  M+
Sbjct:    7 LSIFALT-TLAFALEDNLENRQAQAKRYLEANPPKAMAQALADQTVTMLPEAERKPYLDMLTKHLDVKAIHQAMQTALMNHFTANELEVLANFYSNPEAKTALAKMDPYMAEVLPVLQAEML 127          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|658427366|ref|WP_029653721.1| (DUF2059 domain-containing protein [Marinobacter daepoensis])

HSP 1 Score: 63.929 bits (154), Expect = 8.765e-10
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 0
Query:   17 LILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLET-LDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQ-EVMMPVME 141
             ILC S +      +    +   A++Y+   P+ + +  MA    +++P+  ER+  +R + T +D+  +      AMVK FT EEL  L + Y + VGKS M K G Y A + P IQ E+M  V E
Sbjct:    9 FILCASTS----FANEESEKKAAAERYLAATPMSDMLSDMAGNMAMQIPEA-ERDDFIRLMTTEVDVSKLESAALDAMVKTFTLEELNALADFYGSDVGKSAMGKFGTYMAMVMPAIQREIMRAVSE 130          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|1174907392|ref|WP_081580678.1| (DUF2059 domain-containing protein [Salinibacter ruber])

HSP 1 Score: 65.0846 bits (157), Expect = 2.005e-9
Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 0
Query:    2 ASRLVHVSLALGTTLLILCLSMTMV----GALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPD-PKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGP----QIQEVMMPVMESNVE 145
            ++R+  +  A   T L+L ++   V    G   DT  NR + A +Y+   PVE+ M  +  +   +MP   KER Q +  ++ L  D +R     AM   FT EE+E L   YST  G+SVM K+  Y A++ P    +++  M  VME+  E
Sbjct:   96 SNRMPSMRYATSITALLLLVTTAGVASAQGTNNDTDANRRQAAKEYLEVQPVEKMMRNVVEKTSARMPGGSKERAQAV--MDELRYDTLRTAMIDAMANTFTVEEIEALTQFYSTPEGRSVMEKMSTYMAKVQPVMMKEVRRSMKQVMEARPE 246          
BLAST of EWM21949.1 vs. NCBI_GenBank
Match: gi|294343219|emb|CBH23997.1| (conserved hypothetical protein [Salinibacter ruber M8])

HSP 1 Score: 64.6994 bits (156), Expect = 3.027e-9
Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 0
Query:    2 ASRLVHVSLALGTTLLILCLSMTMV----GALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPD-PKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGP----QIQEVMMPVMESNVE 145
            ++R+  +  A   T L+L ++   V    G   DT  NR + A +Y+   PVE+ M  +  +   +MP   KER Q +  ++ L  D +R     AM   FT EE+E L   YST  G+SVM K+  Y A++ P    +++  M  VME+  E
Sbjct:  104 SNRMPSMRYATSITALLLLVTTAGVASAQGTNNDTDANRRQAAKEYLEVQPVEKMMRNVVEKTSARMPGGSKERAQAV--MDELRYDTLRTAMIDAMANTFTVEEIEALTQFYSTPEGRSVMEKMSTYMAKVQPVMMKEVRRSMKQVMEARPE 254          
The following BLAST results are available for this feature:
BLAST of EWM21949.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179858|ref|XP_005852774.1|1.623e-140100.00hypothetical protein NGA_0685100 [Nannochloropsis ... [more]
gi|501124751|ref|WP_012173848.1|3.159e-1532.87DUF2059 domain-containing protein [Desulfococcus o... [more]
gi|501521976|ref|WP_012529913.1|4.892e-1533.80DUF2059 domain-containing protein [Geobacter bemid... [more]
gi|1125137979|gb|OLA95567.1|2.452e-1235.43hypothetical protein AUH19_09840 [Verrucomicrobia ... [more]
gi|505929475|ref|WP_015720644.1|2.471e-1237.04DUF2059 domain-containing protein [Geobacter sp. M... [more]
gi|506318248|ref|WP_015838023.1|1.668e-1132.58hypothetical protein [Geobacter sp. M21] >gi|25177... [more]
gi|1155015469|ref|WP_078920789.1|2.139e-1031.97DUF2059 domain-containing protein [Thiothrix eikel... [more]
gi|658427366|ref|WP_029653721.1|8.765e-1033.07DUF2059 domain-containing protein [Marinobacter da... [more]
gi|1174907392|ref|WP_081580678.1|2.005e-932.68DUF2059 domain-containing protein [Salinibacter ru... [more]
gi|294343219|emb|CBH23997.1|3.027e-932.68conserved hypothetical protein [Salinibacter ruber... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8754rna8754Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications