rna8754, rna8754 (mRNA) Nannochloropsis gaditana

Overview
Namerna8754
Unique Namerna8754
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1792
Alignment locationKK037250.1:81184..82831 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF2059
Orig transcript idgnl|cribi|Naga_100157g7.52.mrna
Orig protein idgnl|cribi|Naga_100157g7.52
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:81184..82831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100157g7gene8486Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8754rna8754-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21949.1cds8724Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8754 ID=rna8754|Name=rna8754|organism=Nannochloropsis gaditana|type=mRNA|length=1792bp
GTGAACAAAACCTGACCACCCTGGAAATAAAAACGTGAAGCGGCGCAACT
GGAGCATTTTTGCTATAATGTGTTTGAACTCACATCTTCTCGCCGTTGAG
GCAAGCCTTCGAGCCCACGGTCGTCGCTTTCGGGCCCCGGCAGCAGTGGA
AGACGAATCCTTGCCGCCCTCCTCGCCGGCGGACAGCGCTTGCTCCTCTT
TGGAATGCTTGGATGATTTCGATACAAATATCATCGGGAGTAGTGGCCGT
TACTATGCGGGAGGAGAGGCCTCTGTGACTTCAGAGGGAGTGGTAGATGA
GCGTGCATAAATGACCTCCTATCCCAACCTGTGCGACCTGCCCTCGACGG
GTCGTTGAGGAGTCGAGAGCCGTCCTCTGCACCTATCTCACTTTTGTCCA
GACTCCATCGCGAACGATTGTGACGCAGCGATACAATCATGTGTCTCCTA
CGAGCCTCTTGGACTTGTCTCATATTTCGTATCTCATGGTGCCGTACCGT
CTCGTTCCCTCAAGTCACCCTAGTCTGTTCACGAGATCCATTAGGTCGCC
CGTATGGCCGCAGCCATTTTTTCTCTTGATCGAGTTTACTTTGCGCAAAT
AGGGGCTTTATCGATGTCAATGCAACGTGCACGGCCTCACGTACCCATCT
CCGCCCCCACCTTCCCACATGTCACACAGCCTACTTCCTCTCTTCATACA
GAGCACCATGCGCGTCGCTGCTGCCCTCATCGCCACCCTGGCCACCGCCT
CCGCCTTCCTCGCCCCCGCCTCCCTCCCCTCCTCCTCCTCCTTCCGCCGC
ACTCAAGGCCGTGTCTCCATGGACATCTCGGGCATCGTGGGCTCCGACGT
GGAGGTGCCGGAATTCGACCCCCTGGGCCTGGCCAAGAACAAGGACGAGG
AAACGCTGGGCTGGTACCGCGCGGCCGAACTCAAGCACGGGCGTGTGTGC
ATGCTGGCCTCGGTCGGGTACCTCGTCCAGGGGCTGTACCACCTTCCCGA
CGGGCCCTTCGAGGCCTCCAAGCCCATCGACGCCCTGCTCAAGGTCTCAA
GCGAACGCCCGCTGGCCGCCGTGCAGATCGCCATCGCCATCGCCGCCCTG
GAAGTGCTCGGTGCCTCCATCCAGAAGTACACGGCCCCGGGAGACCTGAC
CTTTGACCCCCTTGGCTTGAAGCCCGAAGACCCTGAGGAGCTCGCGGAGC
TGCAGCTGAAGGAGCTGAAGAACGGGCGGTTGGCCATGTTGGCCACGGCG
GGCTTGGCCGCCCAGGAATACGTGACTGGCCAGGGGCCGGTGGAGCAGCT
GCTCTCGGGCCACATCTCCCCCTTCGGTGACGGCCAAGGGGCGTTCTGAG
CAGCGTCGTAGATGCGTAGGGGGAAGGGAAGGAGGGGGGAGGGGGAGACT
ACCTGTGTATGGAGAGGGTTCAGGGTGCGTGTGTGTTTGTCAGGGCGGAG
GAGACGCGAAGCGGGGAGGGAAGACGAGGATTGCAGGCCTCGAGGAGGCT
GTTGGACCTGGAAAGAGGATAGAGACACCCGTGTTGCTTTTCTCAGGAGA
CCTTCCCGGGGAGAGAATCTCAGCCTTGCCTGCACTGTTCTTTTTCCCTC
GCCCGCCGTGGGAAAGGGTTGAACCACAACACGAAGAATGAAGCCAAAGG
AAGCACCGTTGTGCCGATCTCCGGGTATGCATCGCCGACAAGATGGCCCT
TATGCCAAGGCTTTCTCGGTCGAGGGGTTCGTTACTTTTTTTCCTGATTA
CGTTACGCATTGCATTGGCCCAGCACGTCTCCATCATGTTTG
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protein sequence of rna8754

>rna8754-protein ID=rna8754-protein|Name=rna8754|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MASRLVHVSLALGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVE
ENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTE
ELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQ
ERRAKRGELNDLPETIKLPPQSQKLKDGVYMGNGLSNAQREEM
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mRNA from alignment at KK037250.1:81184..82831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8754 ID=rna8754|Name=rna8754|organism=Nannochloropsis gaditana|type=mRNA|length=1648bp|location=Sequence derived from alignment at KK037250.1:81184..82831- (Nannochloropsis gaditana)
ACCTCTTACCTTGGGTTTATCTCATGTATATCTTCAGGAAAACTTCACAC
CCATGGCTTCCCGTCTGGTCCATGTCTCTCTGGCCCTTGGTACAACACTC
CTCATCCTCTGCCTTAGTATGACCATGGTCGGCGCTCTGAAGGACACTGT
GAAAAATCGTATGAAGCTGGCCGATCAATACATCTTTGAGAATCCCGTGG
AAGAGAATATGGAGGGGATGGCACGGTACGTCCCAGAGTGTTTTTGTTCG
CATTCAAATCGGCTATTTCAGCTAAAGGCATATTTCATGGAAGGAAAGGC
TTCGTGTTGTACGTTGATCTTGGCACTTTCGCATTAGTCTGTAGGATGGC
AGAAAGGCATATATCACGAAGAGAAATAACCCGCAAGTTTTGCACTGCCC
TTTCCAACCGGTCCATTGACCCATTGCATTACACCTCCATCGGGGGGGTC
AATCGTCATCCCTGGCCATTCACTCGAAATTTTCTCTCATTTCATCCTCC
TACCATGCAGTCAACACATGCTCAAGATGCCAGATCCTAAGGAGCGTGAG
CAGCTTATGCGCAATTTGGAAACGTTGGACATGGACCATGTCCGACGGAT
TACGCGCCACGCCATGGTCAAGCACTTCACGACGGAGGAGTTGGAGTTCC
TTATCAACATGTACAGGTGCGTCCTTTATTTACTTGTCTTGAAGTATTTT
GTCGTCCTTTCTCTCTTTTCGTGGTTCCGCCTTGCAGGTTTTCTCCCAAT
TTTCTGGCCTTGAGTTACAGGGCTAAGTCGCCTCTGGACGCATGACCAAC
ATTCGATTGACTTGCACCCTTTCAATTCCCTCTTTTCTTTGGCCGAAACA
AATTTGCTGACCCCGCAGCACCAGCGTGGGAAAGTCGGTCATGGCCAAGA
TTGGCGCTTACTCTGCCGAACTGGGACCGCAGATTCAAGAGGTGATGATG
CCTGTGATGGAGAGCAACGTCGAGTTCTACCAGGAGCAGGAGAGGCGGGC
GAAGAGGGGGGAGCTGAACGATCTCCCCGAAACGATCAAACTACCCCCTC
AGAGCCAGAAGCTCAAGGACGGGGTCTACATGGGGAACGGCCTGTCCAAC
GCTCAAAGGGAGGAAATGTAGGACTTCTTCCCCGTCAGAAACGAGTGTCA
AAATCTTGGATGGGCCAGACATGTAAGGACCCCACGAAAAGACGCGTAGA
TAGGCCGGGAACGAAGAGATCGTGGAGGGGGGTCGGTCAAGAGGGCAGTT
GTGGGGGGCCTTCAATCCAGGGTCCCGGACGAAGGGAGAAAGCGGGACGA
TAGACGACGCGAGAGTGGGTTAAGAGTACGAGCGCAGCTTGCTTGGATAC
CTCGCCTTCCATTTCTTGTCCCACTCCCTTGTGGAAATCAGGGGAAGGCT
TTGCATGTGCGTGGGAAGAGGTGTGAGGCGGGAGGAGCGGACTCGTCCCT
GTGGCTGGACACAGGGGTACCGGGCAAGCTGGGGGGGCTCTCCTGCGCCT
CGCCCGGTCGTGAAGGGGGTGGGATTTTAGTAGGAAAATGTACTCAAACA
TGATGGAGACGTGCTGGGCCAATGCAATGCGTAACGTAATCAGGAAAAAA
AGTAACGAACCCCTCGACCGAGAAAGCCTTGGCATAAGGGCCATCTTG
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Coding sequence (CDS) from alignment at KK037250.1:81184..82831-

>rna8754 ID=rna8754|Name=rna8754|organism=Nannochloropsis gaditana|type=CDS|length=1746bp|location=Sequence derived from alignment at KK037250.1:81184..82831- (Nannochloropsis gaditana)
CACCAGCGTGGGAAAGTCGGTCATGGCCAAGATTGGCGCTTACTCTGCCG
AACTGGGACCGCAGATTCAAGAGGTGATGATGCCTGTGATGGAGAGCAAC
GTCGAGTTCTACCAGGAGCAGGAGAGGCGGGCGAAGAGGGGGGAGCTGAA
CGATCTCCCCGAAACGATCAAACTACCCCCTCAGAGCCAGAAGCTCAAGG
ACGGGGTCTACATGGGGAACGGCCTGTCCAACGCTCAAAGGGAGGAAATG
TAGTCAACACATGCTCAAGATGCCAGATCCTAAGGAGCGTGAGCAGCTTA
TGCGCAATTTGGAAACGTTGGACATGGACCATGTCCGACGGATTACGCGC
CACGCCATGGTCAAGCACTTCACGACGGAGGAGTTGGAGTTCCTTATCAA
CATGTACAGATGGCTTCCCGTCTGGTCCATGTCTCTCTGGCCCTTGGTAC
AACACTCCTCATCCTCTGCCTTAGTATGACCATGGTCGGCGCTCTGAAGG
ACACTGTGAAAAATCGTATGAAGCTGGCCGATCAATACATCTTTGAGAAT
CCCGTGGAAGAGAATATGGAGGGGATGGCACGCACCAGCGTGGGAAAGTC
GGTCATGGCCAAGATTGGCGCTTACTCTGCCGAACTGGGACCGCAGATTC
AAGAGGTGATGATGCCTGTGATGGAGAGCAACGTCGAGTTCTACCAGGAG
CAGGAGAGGCGGGCGAAGAGGGGGGAGCTGAACGATCTCCCCGAAACGAT
CAAACTACCCCCTCAGAGCCAGAAGCTCAAGGACGGGGTCTACATGGGGA
ACGGCCTGTCCAACGCTCAAAGGGAGGAAATGTAGTCAACACATGCTCAA
GATGCCAGATCCTAAGGAGCGTGAGCAGCTTATGCGCAATTTGGAAACGT
TGGACATGGACCATGTCCGACGGATTACGCGCCACGCCATGGTCAAGCAC
TTCACGACGGAGGAGTTGGAGTTCCTTATCAACATGTACAGATGGCTTCC
CGTCTGGTCCATGTCTCTCTGGCCCTTGGTACAACACTCCTCATCCTCTG
CCTTAGTATGACCATGGTCGGCGCTCTGAAGGACACTGTGAAAAATCGTA
TGAAGCTGGCCGATCAATACATCTTTGAGAATCCCGTGGAAGAGAATATG
GAGGGGATGGCACGCACCAGCGTGGGAAAGTCGGTCATGGCCAAGATTGG
CGCTTACTCTGCCGAACTGGGACCGCAGATTCAAGAGGTGATGATGCCTG
TGATGGAGAGCAACGTCGAGTTCTACCAGGAGCAGGAGAGGCGGGCGAAG
AGGGGGGAGCTGAACGATCTCCCCGAAACGATCAAACTACCCCCTCAGAG
CCAGAAGCTCAAGGACGGGGTCTACATGGGGAACGGCCTGTCCAACGCTC
AAAGGGAGGAAATGTAGTCAACACATGCTCAAGATGCCAGATCCTAAGGA
GCGTGAGCAGCTTATGCGCAATTTGGAAACGTTGGACATGGACCATGTCC
GACGGATTACGCGCCACGCCATGGTCAAGCACTTCACGACGGAGGAGTTG
GAGTTCCTTATCAACATGTACAGATGGCTTCCCGTCTGGTCCATGTCTCT
CTGGCCCTTGGTACAACACTCCTCATCCTCTGCCTTAGTATGACCATGGT
CGGCGCTCTGAAGGACACTGTGAAAAATCGTATGAAGCTGGCCGATCAAT
ACATCTTTGAGAATCCCGTGGAAGAGAATATGGAGGGGATGGCACG
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Synonyms
Publications