rna8728, rna8728 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8728
Unique Name	rna8728
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	876
Alignment location	KK037250.1:10625..11239 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100720g3.4457.mrna
Orig protein id	gnl\|cribi\|Naga_100720g3.4457
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:10625..11239 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100720g3	gene8459	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21976.1	cds8699	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8728	rna8728-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:10625..11239-
coding sequence from alignment at KK037250.1:10625..11239-

mRNA sequence

>rna8728 ID=rna8728|Name=rna8728|organism=Nannochloropsis gaditana|type=mRNA|length=876bp
ATGAAATGCCTCGATCACGAAACACGTCTAAATAAGCCTAACGATCGTCG
GGCACAGGTAATTCTTGTAGAAGAAAAAAAGGTCATGCGGCTTCTTCCCC
GCCTTTTCTACGTGGCAATTCCATTATTTTGGAGCTTGCTTCCTTATGTC
ATATCGGAGGATCACCTTCTCCCCTTCAAGCTCTGCGGACCCGATGAGTT
GGGTGTCGAGGTGATCCGCCTGAACGCCTGGCCGCTGGTCCCTGGGAGGG
AATTGACCATCACCGCCATCTACACTCCGAATGTGACGGTGACGGGGGGA
GAAGCGCTGGTAACAGTGCACGTGCTCGGGATTCCCCTGACCGAGAGACG
TGCGATCTGCCACGAGTCCGGTGTGCACTGTCCCCTCCTGCTGCATCACT
CCACAACCTCCGTCATCCATGCCCACGTCCCGGGTCTCACGCCAGGCTTC
GGAGTGGACGCACGTGTTGAATTGTTTGATGGGAGGGGTAGACGGTTGAC
TTGCCTGGACGCGCGGGTGGAGGTCCGCACCCACCCCTTGATCGGAGTAC
CTAGCTGGTCGAAACCCTCCTTGGCTTTGTCGCCCACCTTGTCTCCCGAT
TCCCCCACCACCACCCCCTTCGCTTCCTCATCTTCGCCCGTAGTTTCCTC
TCTCTCCTCGTTGCTTTCGTCCCTGCCTGCGCAGTCGGCAGCAGTGGCTT
TGAGCTCTACAGAGGATGGCACCACAGGAATCAAACAAGCGTTGGATCAG
TTTATAAAATTGAGACATCAGGACTTCGCAGTTGAGGCGCAGGAACCAAG
AGACGAAAGCACAAGCGATAGAAATGGACCATTACGTGAGGATCATGGGG
ACAGGATACGCTTGCGAAGGGAGTGA

protein sequence of rna8728

>rna8728-protein ID=rna8728-protein|Name=rna8728|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MVGRRYGGGMDTQRLVRMGKGEEVFRWIKRSIATYADNLLSKGWFCMDPV
ASFTLPLFLHLPHLNENYDPLYLPHSHWNDDGHSHTEYRNLAPSKIRSSG
PT

mRNA from alignment at KK037250.1:10625..11239-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8728 ID=rna8728|Name=rna8728|organism=Nannochloropsis gaditana|type=mRNA|length=615bp|location=Sequence derived from alignment at KK037250.1:10625..11239- (Nannochloropsis gaditana)
TCCTCGGCGCCGGCTGTCGGGTCGGGACTCGGGTTAAGATTCATCAATGC
GTGCTCATGGATAATGTAACGGTCTTGGACGGGGTGACCCTTACCAACAC
GATCGTATGCTCGCACGCCACCGTCCAGGTGAGGCGCAATGAAAGGGGGG
GGGGGGGGGAGAAGGGTATAAAAAGGAGGACACAAACATGGTTGGAAGAC
GGTATGGAGGAGGTATGGATACACAACGTTTAGTGCGGATGGGGAAGGGA
GAGGAGGTCTTTCGTTGGATTAAGCGCTCGATTGCCACGTACGCCGACAA
CCTCCTGTCAAAGGGATGGTTCTGCATGGACCCTGTAGCCTCTTTCACGC
TCCCATTATTCCTCCATTTACCCCACTTGAACGAGAATTATGATCCGCTA
TACCTGCCTCATTCTCATTGGAACGACGACGGTCATTCTCATACGGAATA
TAGGAATCTTGCTCCCTCCAAGATTCGTTCGTCGGGTCCTACATGACGGT
GCCACCCAAGACAAAGTTAAAGAATGGAGAATTGCTACGGGACTGAACCA
GCCATGGAGACAGAGCGCATGACACGCTATCATTGAAAGCAAATTCATCT
TAAAGGATCTATCAA

Coding sequence (CDS) from alignment at KK037250.1:10625..11239-

>rna8728 ID=rna8728|Name=rna8728|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at KK037250.1:10625..11239- (Nannochloropsis gaditana)
ATGGTTGGAAGACGGTATGGAGGAGGTATGGATACACAACGTTTAGTGCG
GATGGGGAAGGGAGAGGAGGTCTTTCGTTGGATTAAGCGCTCGATTGCCA
CGTACGCCGACAACCTCCTGTCAAAGGGATGGTTCTGCATGGACCCTGTA
GCCTCTTTCACGCTCCCATTATTCCTCCATTTACCCCACTTGAACGAGAA
TTATGATCCGCTATACCTGCCTCATTCTCATTGGAACGACGACGGTCATT
CTCATACGGAATATAGGAATCTTGCTCCCTCCAAGATTCGTTCGTCGGGT
CCTACATGA

Synonyms

Publications