rna8717, rna8717 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8717
Unique Name	rna8717
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1175
Alignment location	KK037249.1:648494..650644 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100745g2.10543.mrna
Orig protein id	gnl\|cribi\|Naga_100745g2.10543
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:648494..650644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100745g2	gene8448	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8717	rna8717-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21985.1	cds8688	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:648494..650644+
coding sequence from alignment at KK037249.1:648494..650644+

mRNA sequence

>rna8717 ID=rna8717|Name=rna8717|organism=Nannochloropsis gaditana|type=mRNA|length=1175bp
ATGGCGGGATCTCTGAGGGGGAGGCCGCTCCCCGATCAGGCCCTTGAAGA
CTTGCTGGGCATGACTTTCCCCCTAAGCCATTCTGCCGACACAAATTCAT
CTTCGCCGACCGCCATGCAATGGCAGCCGTGCGTGGGCACGGAAGCCAGA
TTCGCGGAAGAGGAGGCAAGAGACGTACAGGCAGGCTTCATTTCGGCGGG
AAATGACACCGCAGAAGCCCTGCCTTTGCATCCGTTTGATAGCGCTGAGA
AGGGTCAAATGGGCGATGACATGGGGGGGGACGAAGGGTTGCTGCCCGGT
CAATCTTATAAAACGGCACGTGAGATCATCCTGTCCTTGAAGACGTACCA
TATAATGTCCGAGTAAGGACGGTAATAAGTCATGGACATGGCCTGCTCAT
TCTTTTCCTCTATATTCTTTCACCGTCGTGACGTACGCGTACAAAAGTCA
TGGAAACGGATGGCAGTGGAGCAGGTATAATGAAAGAATGTGAATAAGAT
ATGCACAAGAACACAGTCCGCCTCCCGCACCGCATTATATGCCCTGAGAT
GTATCTTGCATATCCCTTCGAGTGATCTTTTTCTTGGAGCCTTTTGCTTG
GGGGCAAAGCACACGAAACCTTTCAGCTGTAGCGATAGCGGCAAGGTCAC
GTTTTCTTTACTCTCTTGGAGAACGCGTGATCAGAGGCCGCAATATATCA
TGCAAGTGTCGGTGGGAAGACAGTGCTCTGCCCACCAATTTTACAAATAG
TGCTTCAGTCAGTCACAAAATTGTCTAAACTTTGCCTGCAGAAAATGTTG
TTCTAAAGAGGGCCTACAGGATTGTATGAAGAACTCGTGCTGACTGTTAC
ATAAATTGCCAATAACCCTTAACGGTGAGCTCTCCGACTTGCGAGCAACA
GTCAAATACATGCTGCCTCGTTTTGGACTCAATATGCTGCAAAAAGCCCG
AGAGGGAAGCGCGCTCGAAAAGTTCTAAAACAGTTGTTCCTCCCAATTTC
TGAGTCGGTCGATATCATGCACGGGGACTACTGAATTCAGTAAAGGTATA
TCACGCCGTCTGAGTTGAAGAGAATTCAGGTGGATTGAAAGGAAAGGAAA
ACAGCATGTGCATGTTCAAGTTAGCGGATGAGCTTGCAAAGAATGGTACA
GTTAGTCATCAATCAATAAATGATT

protein sequence of rna8717

>rna8717-protein ID=rna8717-protein|Name=rna8717|organism=Nannochloropsis gaditana|type=polypeptide|length=339bp
MKTFSVHLVLLATFAATTCRNTHAQPVVTFDSPPSPAPVTDSPTSIPSAT
PTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPI
GLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTAL
PTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGPN
EIVTQGFLDSLVVSPGGPLTVSSDFIFVERPESDVFVSLTIGQEASASGF
RNRTQKAIGARELTFKRSTLRPNTWRPKPRYSIVGNEVVWQLPFDGFVLK
KTYKIKWKLRVDRGVTSGTQLPFILRVGSNMQDLMVTVL

mRNA from alignment at KK037249.1:648494..650644+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8717 ID=rna8717|Name=rna8717|organism=Nannochloropsis gaditana|type=mRNA|length=2151bp|location=Sequence derived from alignment at KK037249.1:648494..650644+ (Nannochloropsis gaditana)
TTGCGCCAATTCCGACACGTCCAGAAAAATGGAATGATAATACAGAATTT
ATCTTATGCTAAAAATAATCTTGGCAAACATGGCTGTATTTGCTTAAAGG
CATCGCAGTCCATAATTCTTGCCCAACAATGCAAAAGTAGCCTGTTGCTA
AGGTGATCCTATGCTTATCTCATTTCTTACCTAGCGTTTTGTGATATCGT
AGAGTAAGCAAACAACATAATATCCACGAAAAATCATTATTTTTTTTGGA
TCAAATGCAGTTTGAAGCTCTTAATACCGCACTCATCCGCTTTCCCGAAC
AGAAGGCGACGGACAGACGTATACCAATATGAAAACCTTCTCCGTGCATC
TGGTCCTGCTTGCGACTTTCGCTGCCACCACTTGCCGCAACACTCATGCA
CAACCGGTAGTGACATTTGATTCCCCACCCAGCCCTGCCCCGGTCACGGA
CTCTCCCACTTCTATTCCCTCTGCAACCCCGACAACcacaccctccgcct
ctcccacgGCCTCGCCTACAGCCACTCCCTCTGCAGCACCGACAAATACA
CCAACAAACACACCAACAGCTACTCCTACTGCCAAGCCCTCTGCAACACC
AACCACTAcacccacgccctcgccgaTAGGCTTGCCTACAGCCACTCCCA
CTGCCACGCCCACTGCAACACCGACAGATGTTCCAACAGGTGCATCCACA
GCCACTCCCACGGGCACATCAACTGCTTCGCCGACATCGTCACCCACCGC
CTTGCCTACTGCGATGCCTACCGCATTACCGACAAACACACCTACCGCCT
CGCCCACAGCCATTCCCACGGCCATACCCACCTCACCTCCCACTACCACA
CCGACACGCAATCCTACCAAGACTCCCACGGCTGTGCctactccttctcc
ttccgctgTCCCTACCCTGGGGCCGAACGAGATAGTGACGCAGGGGTTCC
TCGATTCCCTGGTCGTCAGTCCTGGCGGTCCGCTCACCGTTTCTTCCGAT
TTCATATTTGTGGAACGCCCCGAATCCGATGTTTTTGTCTCGGTAAGAGC
GAGTTGAAAGTCTCGTACAATAATTTATGCATGCATAGAAACGGAAAGTG
CAGCGGATCGGGTGAACAATGCCGCCTTGTCCCTTCGTCGTTGCCCTCAC
TCAAGCGCTGACCATGCCGTACCTGTCGATTTACCCGCACAGCTTACGAT
AGGACAGGAGGCAAGCGCCTCAGGATTTCGCAACAGGACTCAAAAGGCGA
TCGGTGCTCGAGAATTGACATTCAAACGATCTACACTGCGACCCAACACA
TGGAGGCCCAAGTGAGTACCGGCATTCAGATCCAGCAATCGATACCCTCA
CGCACATTCATATTTGGGTCTGTTCCTGGGAACCTCAAGCCTTTGAATGT
ACTTCCGCTATATCCATATGGCGTTCTCGTTTTTTCGGGTTATCACACGC
GCGAAATACCGTCCGCTCATGTCACAGTTTATCCCTTTAAAATCAACTTT
ATCTCGATTCTTTCCATCCAAATTAAGGCCTCGCTACTCGATAGTAGGCA
ATGAAGTTGTCTGGCAACTTCCCTTTGATGGCTTTGTTCTCAAGAAGACG
TATAAGATCAAGTGGAAACTCCGTGTGGACCGGGGCGTTACCAGCGGCAC
CCAATTGCCTTTTATATTACGTGTCGGGTCAAACATGCAAGACTTGATGG
TGACCGTGCTATAAAAAGACTAGAAATCACAAGAAGCAAAATATCATTCT
AAATAATATGTTCGTTAGAAATTTAAAACGTCATGATTGAGAAAAGTGGG
AAGCAAGTCGCCGAAGAAACTGCTGGACAGATCCACGGCAGCCAGATCAC
CTGCACATGTTCAGAATGAGGCCGGACATGTTGGCTTATCTTCCGTTATa
taaggggggaaagcaggagaTGGTactggggaagggaaagataTAGTACG
GTTATTTGCAGCGTTCAAGCAAGGAGGCCATCCAGTGAAGGTGCGTTAAA
AAGTGTGAAATGGATACAGAGCTTGCACTATGCGTGTAGCTTTTATGTGT
AAGTGAACGGGAAATACGAAAAATGTATGTCGAGGATCTTTCGAAAAGCA
TTGTAATTAATATCCTGCGCTTTTGCGGTAAAAATTATTACGACCAAAAC
G

Coding sequence (CDS) from alignment at KK037249.1:648494..650644+

>rna8717 ID=rna8717|Name=rna8717|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at KK037249.1:648494..650644+ (Nannochloropsis gaditana)
ATGAAAACCTTCTCCGTGCATCTGGTCCTGCTTGCGACTTTCGCTGCCAC
CACTTGCCGCAACACTCATGCACAACCGGTAGTGACATTTGATTCCCCAC
CCAGCCCTGCCCCGGTCACGGACTCTCCCACTTCTATTCCCTCTGCAACC
CCGACAACcacaccctccgcctctcccacgGCCTCGCCTACAGCCACTCC
CTCTGCAGCACCGACAAATACACCAACAAACACACCAACAGCTACTCCTA
CTGCCAAGCCCTCTGCAACACCAACCACTAcacccacgccctcgccgaTA
GGCTTGCCTACAGCCACTCCCACTGCCACGCCCACTGCAACACCGACAGA
TGTTCCAACAGGTGCATCCACAGCCACTCCCACGGGCACATCAACTGCTT
CGCCGACATCGTCACCCACCGCCTTGCCTACTGCGATGCCTACCGCATTA
CCGACAAACACACCTACCGCCTCGCCCACAGCCATTCCCACGGCCATACC
CACCTCACCTCCCACTACCACACCGACACGCAATCCTACCAAGACTCCCA
CGGCTGTGCctactccttctccttccgctgTCCCTACCCTGGGGCCGAAC
GAGATAGTGACGCAGGGGTTCCTCGATTCCCTGGTCGTCAGTCCTGGCGG
TCCGCTCACCGTTTCTTCCGATTTCATATTTGTGGAACGCCCCGAATCCG
ATGTTTTTGTCTCGCTTACGATAGGACAGGAGGCAAGCGCCTCAGGATTT
CGCAACAGGACTCAAAAGGCGATCGGTGCTCGAGAATTGACATTCAAACG
ATCTACACTGCGACCCAACACATGGAGGCCCAAGCCTCGCTACTCGATAG
TAGGCAATGAAGTTGTCTGGCAACTTCCCTTTGATGGCTTTGTTCTCAAG
AAGACGTATAAGATCAAGTGGAAACTCCGTGTGGACCGGGGCGTTACCAG
CGGCACCCAATTGCCTTTTATATTACGTGTCGGGTCAAACATGCAAGACT
TGATGGTGACCGTGCTATAAATGAAAACCTTCTCCGTGCATCTGGTCCTG
CTTGCGACTTTCGCTGCCACCACTTGCCGCAACACTCATGCACAACCGGT
AGTGACATTTGATTCCCCACCCAGCCCTGCCCCGGTCACGGACTCTCCCA
CTTCTATTCCCTCTGCAACCCCGACAACcacaccctccgcctctcccacg
GCCTCGCCTACAGCCACTCCCTCTGCAGCACCGACAAATACACCAACAAA
CACACCAACAGCTACTCCTACTGCCAAGCCCTCTGCAACACCAACCACTA
cacccacgccctcgccgaTAGGCTTGCCTACAGCCACTCCCACTGCCACG
CCCACTGCAACACCGACAGATGTTCCAACAGGTGCATCCACAGCCACTCC
CACGGGCACATCAACTGCTTCGCCGACATCGTCACCCACCGCCTTGCCTA
CTGCGATGCCTACCGCATTACCGACAAACACACCTACCGCCTCGCCCACA
GCCATTCCCACGGCCATACCCACCTCACCTCCCACTACCACACCGACACG
CAATCCTACCAAGACTCCCACGGCTGTGCctactccttctccttccgctg
TCCCTACCCTGGGGCCGAACGAGATAGTGACGCAGGGGTTCCTCGATTCC
CTGGTCGTCAGTCCTGGCGGTCCGCTCACCGTTTCTTCCGATTTCATATT
TGTGGAACGCCCCGAATCCGATGTTTTTGTCTCGCTTACGATAGGACAGG
AGGCAAGCGCCTCAGGATTTCGCAACAGGACTCAAAAGGCGATCGGTGCT
CGAGAATTGACATTCAAACGATCTACACTGCGACCCAACACATGGAGGCC
CAAGCCTCGCTACTCGATAGTAGGCAATGAAGTTGTCTGGCAACTTCCCT
TTGATGGCTTTGTTCTCAAGAAGACGTATAAGATCAAGTGGAAACTCCGT
GTGGACCGGGGCGTTACCAGCGGCACCCAATTGCCTTTTATATTACGTGT
CGGGTCAAACATGCAAGACTTGATGGTGACCGTGCTATAAATGAAAACCT
TCTCCGTGCATCTGGTCCTGCTTGCGACTTTCGCTGCCACCACTTGCCGC
AACACTCATGCACAACCGGTAGTGACATTTGATTCCCCACCCAGCCCTGC
CCCGGTCACGGACTCTCCCACTTCTATTCCCTCTGCAACCCCGACAACca
caccctccgcctctcccacgGCCTCGCCTACAGCCACTCCCTCTGCAGCA
CCGACAAATACACCAACAAACACACCAACAGCTACTCCTACTGCCAAGCC
CTCTGCAACACCAACCACTAcacccacgccctcgccgaTAGGCTTGCCTA
CAGCCACTCCCACTGCCACGCCCACTGCAACACCGACAGATGTTCCAACA
GGTGCATCCACAGCCACTCCCACGGGCACATCAACTGCTTCGCCGACATC
GTCACCCACCGCCTTGCCTACTGCGATGCCTACCGCATTACCGACAAACA
CACCTACCGCCTCGCCCACAGCCATTCCCACGGCCATACCCACCTCACCT
CCCACTACCACACCGACACGCAATCCTACCAAGACTCCCACGGCTGTGCc
tactccttctccttccgctgTCCCTACCCTGGGGCCGAACGAGATAGTGA
CGCAGGGGTTCCTCGATTCCCTGGTCGTCAGTCCTGGCGGTCCGCTCACC
GTTTCTTCCGATTTCATATTTGTGGAACGCCCCGAATCCGATGTTTTTGT
CTCGCTTACGATAGGACAGGAGGCAAGCGCCTCAGGATTTCGCAACAGGA
CTCAAAAGGCGATCGGTGCTCGAGAATTGACATTCAAACGATCTACACTG
CGACCCAACACATGGAGGCCCAAGCCTCGCTACTCGATAGTAGGCAATGA
AGTTGTCTGGCAACTTCCCTTTGATGGCTTTGTTCTCAAGAAGACGTATA
AGATCAAGTGGAAACTCCGTGTGGACCGGGGCGTTACCAGCGGCACCCAA
TTGCCTTTTATATTACGTGTCGGGTCAAACATGCAAGACTTGATGGTGAC
CGTGCTATAA

Synonyms

Publications