EWM21985.1, cds8688 (CDS) Nannochloropsis gaditana

Overview
NameEWM21985.1
Unique Namecds8688
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:648822..649535 +
Alignment locationKK037249.1:649686..649804 +
Alignment locationKK037249.1:650021..650207 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21985.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100745g2.10543.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:648822..649535 +
KK037249.1supercontigKK037249.1:649686..649804 +
KK037249.1supercontigKK037249.1:650021..650207 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21985.1 vs. NCBI_GenBank
Match: gi|585102369|gb|EWM21985.1| (hypothetical protein Naga_100745g2 [Nannochloropsis gaditana])

HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0
Query:    1 MKTFSVHLVLLATFAATTCRNTHAQPVVTFDSPPSPAPVTDSPTSIPSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGPNEIVTQGFLDSLVVSPGGPLTVSSDFIFVERPESDVFVSLTIGQEASASGFRNRTQKAIGARELTFKRSTLRPNTWRPKPRYSIVGNEVVWQLPFDGFVLKKTYKIKWKLRVDRGVTSGTQLPFILRVGSNMQDLMVTVL 339
            MKTFSVHLVLLATFAATTCRNTHAQPVVTFDSPPSPAPVTDSPTSIPSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGPNEIVTQGFLDSLVVSPGGPLTVSSDFIFVERPESDVFVSLTIGQEASASGFRNRTQKAIGARELTFKRSTLRPNTWRPKPRYSIVGNEVVWQLPFDGFVLKKTYKIKWKLRVDRGVTSGTQLPFILRVGSNMQDLMVTVL
Sbjct:    1 MKTFSVHLVLLATFAATTCRNTHAQPVVTFDSPPSPAPVTDSPTSIPSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGPNEIVTQGFLDSLVVSPGGPLTVSSDFIFVERPESDVFVSLTIGQEASASGFRNRTQKAIGARELTFKRSTLRPNTWRPKPRYSIVGNEVVWQLPFDGFVLKKTYKIKWKLRVDRGVTSGTQLPFILRVGSNMQDLMVTVL 339          
BLAST of EWM21985.1 vs. NCBI_GenBank
Match: gi|1124996980|gb|OKZ65406.1| (hypothetical protein BHW05_02855 [Clostridium sp. 42_12])

HSP 1 Score: 117.857 bits (294), Expect = 9.484e-26
Identity = 99/170 (58.24%), Postives = 112/170 (65.88%), Query Frame = 0
Query:   24 AQPVVTFDSPPSPAPVTDSPTSIPSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSA 193
            A P+VT      PAP   +P++ P   P+  P+A+PTA PTATP+A PT TPT  PTATPTAKP+ATPT  PT +P   PTATPT  PTATPT  P    TATPT   TA+PT  PTA PT  PTA PT  PTA+PT  PTA PT  PT TPT  PT TPTA PT +PS 
Sbjct:   67 ASPIVT------PAP---TPSAAPQ--PSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKP----TATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPSG 221          

HSP 2 Score: 116.316 bits (290), Expect = 2.950e-25
Identity = 116/264 (43.94%), Postives = 140/264 (53.03%), Query Frame = 0
Query:   47 PSATPTTTPSASP--TASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGPNEIVTQGFLDSLVVSPGGPLTVSSDFIFVERPESD-VFVSLTIGQEASA---SGFRNRTQKAIGARELTF--KRSTLRPNTWRPKPRYSIVGNEVVWQLPFDGFVLKKT 302
            P  TP  TPSA+P  +A PTATP+A PT TPT  PTATPT KP+ATPT  PT +P   PTATPT  PTATPT  PT   TA PT T T  PT++PT  PTA PT  PT TPT  PTA PT  PT+ PT  PT  PT  PTA PT  P+A P+    + V      +  ++ G  L +      + R E + V  SL    + +A    GF     +A G  + +F  K ST      +      I GN     + FDG V  KT
Sbjct:   69 PIVTPAPTPSAAPQPSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPSGNAGQNVNLNGKKAFTIA-GYQLALG-----LTRDEVNTVLGSLKTDVKRTAKSPQGFDVIAFRA-GGNDKSFDEKYSTYILIYLKDDIVVGISGN--ASSMNFDGTVSDKT 323          

HSP 3 Score: 115.931 bits (289), Expect = 4.517e-25
Identity = 89/152 (58.55%), Postives = 100/152 (65.79%), Query Frame = 0
Query:   48 SATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGP 199
            SA+P  TP+ +P+A+P   PSA PT TPT  PTATPTAKP+ATPT  PT +P   PTATPT  PTATPT  PT   T  PT T TA PT++PT  PTA PT  PT TPT  PTA PT  PT+ PT  PT  PT  PTA PT  P+A PT  P
Sbjct:   66 SASPIVTPAPTPSAAPQ--PSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKP 215          

HSP 4 Score: 90.5077 bits (223), Expect = 2.156e-16
Identity = 84/155 (54.19%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   47 PSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPT--PSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAVPTPSPSAVPTLGP 199
            PSA+P  TP  +P+A+P  + +   T TPT T TA P+A P  TP  TP+  P P   PTATPTA PTATPT  PT   T  PT T TA PT++PT  PTA PT  PT TPT  PTA PTA PT+ PT  PT  PT  PTA PT  P+A PT+ P
Sbjct:   29 PSASPIVTPEPTPSAAPQPSATPTATPTPTPTQTAKPSASPIVTPAPTPSAAPQPSAKPTATPTAKPTATPTAKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKP 183          

HSP 5 Score: 70.0922 bits (170), Expect = 1.435e-9
Identity = 49/89 (55.06%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   43 PTSIPSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTS 131
            PT+ P+  PT TP+A PTA+PT  P+A PT  PT TPT  PTA P+  PT TPT  P   PT  PTATPT  PT  PT   TATP+G +
Sbjct:  135 PTATPTVKPTATPTAKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTVKPTATPTAKPTATPSGNA 223          
BLAST of EWM21985.1 vs. NCBI_GenBank
Match: gi|585104552|gb|EWM23483.1| (putative lipase, partial [Nannochloropsis gaditana])

HSP 1 Score: 78.5666 bits (192), Expect = 2.103e-12
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   92 TTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPTALPTAMPTALPTNTPTASPTAIPTAIPTSPPTTTPTRNPTKTPTAV 186
            T++PT  P  +PT  PT TPTA+PT  PT + T  PT T TA+PT SPTA+PTA PTA+PT T    PTA+PTA PT  PT TPT  PT TPTA+
Sbjct:  294 TSSPTSFPTAMPTKLPTGTPTASPTGKPTASPTGMPTATLTAAPTVSPTAIPTATPTAMPTVT----PTAMPTATPTMSPTATPTAMPTATPTAM 384          

HSP 2 Score: 74.3294 bits (181), Expect = 4.048e-11
Identity = 62/111 (55.86%), Postives = 73/111 (65.77%), Query Frame = 0
Query:   30 FDSPPSPAPVTDSPTSIPSATPTTTPSASPTASPTATPSAAPTNTPTNTPTATPTAKPSATPTTTPTPSPIGLPTATPTATPTATPTDVPTGASTATPTGTSTASPTSSPT 140
            F+   +  P T SPTS P+A PT  P+ +PTASPT  P+A+PT  PT T TA PT  P+A PT TPT  P   PTA PTATPT +PT  PT   TATPT   TA+PT+SPT
Sbjct:  284 FNVYEALLPKTSSPTSFPTAMPTKLPTGTPTASPTGKPTASPTGMPTATLTAAPTVSPTAIPTATPTAMPTVTPTAMPTATPTMSPTATPTAMPTATPTAMPTAAPTTSPT 394          
The following BLAST results are available for this feature:
BLAST of EWM21985.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585102369|gb|EWM21985.1|0.000e+0100.00hypothetical protein Naga_100745g2 [Nannochloropsi... [more]
gi|1124996980|gb|OKZ65406.1|9.484e-2658.24hypothetical protein BHW05_02855 [Clostridium sp. ... [more]
gi|585104552|gb|EWM23483.1|2.103e-1258.95putative lipase, partial [Nannochloropsis gaditana... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8717rna8717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications