EWM22022.1, cds8651 (CDS) Nannochloropsis gaditana

Overview
NameEWM22022.1
Unique Namecds8651
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:577581..577668 +
Alignment locationKK037249.1:577851..577997 +
Alignment locationKK037249.1:578114..578301 +
Alignment locationKK037249.1:578441..578497 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22022.1
Productheat shock protein hsp20
Orig transcript idgnl|cribi|Naga_100959g2.5982.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:577581..577668 +
KK037249.1supercontigKK037249.1:577851..577997 +
KK037249.1supercontigKK037249.1:578114..578301 +
KK037249.1supercontigKK037249.1:578441..578497 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR031107HSP20
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|585102430|gb|EWM22022.1| (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 327.405 bits (838), Expect = 1.617e-113
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query:    1 MALSRYWRDDPLGSNLIERDPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS 159
            MALSRYWRDDPLGSNLIERDPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS
Sbjct:    1 MALSRYWRDDPLGSNLIERDPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS 159          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|1176770500|gb|OQY88376.1| (hypothetical protein B6D39_11330 [Anaerolineae bacterium UTCFX2])

HSP 1 Score: 102.834 bits (255), Expect = 6.387e-25
Identity = 50/142 (35.21%), Postives = 89/142 (62.68%), Query Frame = 0
Query:   16 LIERDPFADFFSTGGG---WLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRK 154
            L+  DP+ +  +       +  PS     S+G +  QP+  +L LDV E ++E++V+   PG+  +D ++T+D+NVL +  E +E++E ++ R+H+ ERR+GS SRS+ LP +   D I A+Y  GVL +H+PK++E+  ++
Sbjct:    4 LVRWDPYREMMNLRNAFDRYFDPS----QSSGEAGWQPMTWNLALDVAETDDEYRVSASLPGIDPDDLEITYDSNVLTIKGEMREDQEVKEERYHMRERRYGSFSRSISLPTSVKADKIKADYSKGVLTLHLPKSEEARPKR 141          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|857977738|emb|CEO96287.1| (hypothetical protein PBRA_004958 [Plasmodiophora brassicae])

HSP 1 Score: 101.293 bits (251), Expect = 1.446e-24
Identity = 44/101 (43.56%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   53 PSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETR 153
            P LN+++KE ++ + + +DAPG+ KED  + F+N VL V+ E KEE  + D + H +ER +G SSR++RLP++   D ITA++ +GVL + VPK  +S T+
Sbjct:   26 PVLNMELKETDDVYSLVVDAPGVPKEDIKLNFENGVLSVSVEHKEEHVQRDEKVHFTERSYGHSSRAIRLPKSIAADKITAKHANGVLTVTVPKQDQSRTK 126          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|855313877|ref|XP_012898331.1| (uncharacterized protein [Blastocystis hominis] >gi|300176618|emb|CBK24283.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 96.2857 bits (238), Expect = 2.581e-22
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = 0
Query:   15 NLIERDPFADFFS--TGGGWLTPSVGG-----------ALSTGTSRGQPVVPSLN----LDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS 159
            + I RDPF D F       W  P               +++TG    + V+   +    +D++E    +++++D PGM+KE+  ++ +NN+L +  ERKEEK  E  + H  ER +GS  R + LP     D I A Y++GVLK+H+PK ++  ++++I V+
Sbjct:    2 SFILRDPFFDGFEDLMANHWPMPLSHSRPMPVEDEKETSMTTGKRLRRDVITPYSGFGRMDMRESEKGYELSVDIPGMEKENIKISTENNILVIEGERKEEKTSEKDKVHFMERHYGSFRREISLPSNVKTDDIVAMYNNGVLKLHIPKAEQHSSKRSITVA 163          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|1084619634|gb|OGO72027.1| (heat-shock protein Hsp20 [Chloroflexi bacterium RBG_19FT_COMBO_56_12])

HSP 1 Score: 96.2857 bits (238), Expect = 2.683e-22
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 0
Query:   49 QPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRK 154
            QP    L LDV E  +EF V    PG+  +D ++TF NN L +  E KEEK+ E A +H+ ERR+GS +RS+ LP     D I A Y+ GVLK+ +PK +E + +K
Sbjct:   34 QPAAWDLALDVTESEDEFTVKASLPGINPDDLEITFTNNTLTIKGETKEEKDVEKAHYHLRERRYGSFARSITLPAGIETDKIQANYEVGVLKLRLPKAEEVKPKK 139          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|1125579021|gb|OLE86282.1| (hypothetical protein AUG08_15150 [Acidobacteria bacterium 13_1_20CM_2_55_15])

HSP 1 Score: 94.7449 bits (234), Expect = 5.437e-22
Identity = 61/152 (40.13%), Postives = 87/152 (57.24%), Query Frame = 0
Query:   15 NLIERDPFADFFST-------GGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS 159
            +LI+ DPF +F +        G  W  P     LST T      VPS+  D+ E +NE  V  + PGM   D DV  +NNVL +  ER  EK+ ++  +H  ER +G+ +RS  LPRT NGD ++AEY  G+LKI +PK +E++  K I+V+
Sbjct:    2 SLIKWDPFREFNTLPARLAFWGKDWEEP-----LSTTT-----YVPSV--DIFETDNEVVVKAEMPGMNANDIDVRLENNVLTLKGERHFEKDAKEENYHRIEREYGTFTRSFALPRTVNGDKVSAEYRDGILKIVLPKKEETKP-KAIKVA 140          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|499236086|ref|WP_010933626.1| (heat-shock protein Hsp20 [Chlorobaculum tepidum] >gi|21674781|ref|NP_662846.1| HSP20 family protein [Chlorobium tepidum TLS] >gi|21647996|gb|AAM73188.1| heat shock protein, Hsp20 family [Chlorobium tepidum TLS])

HSP 1 Score: 94.7449 bits (234), Expect = 5.496e-22
Identity = 52/149 (34.90%), Postives = 81/149 (54.36%), Query Frame = 0
Query:   12 LGSNLIERDPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQ-ESETRKTIRVS 159
            +   L  +DP   F       LTP +       +S G  + P+  +D+ E      ++ D PG+KKED  V+ +++V+ ++ ER +E+EE+   +H  ER WGS SRS  +    + D ITA YD+GVLK+ +PK + E +  K I VS
Sbjct:    1 MALTLYGKDPLKMFEDVFNERLTPFI-------SSMGSMMAPAFKVDISEDEKAIYLSADIPGVKKEDVKVSIEDDVISISAERTQEEEEKKKNYHRVERSWGSLSRSFTIGDNVDSDNITANYDNGVLKVVIPKKEPEQKKSKEIAVS 142          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|506368285|ref|WP_015888004.1| (Hsp20/alpha crystallin family protein [Sinorhizobium fredii] >gi|227820165|ref|YP_002824136.1| HSP16 heat shock protein (plasmid) [Sinorhizobium fredii NGR234] >gi|227339164|gb|ACP23383.1| heat shock protein 16 (plasmid) [Sinorhizobium fredii NGR234])

HSP 1 Score: 95.9005 bits (237), Expect = 6.610e-22
Identity = 46/123 (37.40%), Postives = 76/123 (61.79%), Query Frame = 0
Query:   37 VGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS 159
            +GG L  GT  G  ++P  ++DV E  NE ++  + PG+K ED DV+ +++ L +  E+K E+++E   +H  ER +G+  RS+RLP + + D I A++  GVL + +PK  E E R+ I+V 
Sbjct:   42 LGGPLQRGTQEGGMMMP--DIDVSETENEVRICAELPGVKDEDVDVSLNDDTLTIRAEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDADKIRADFADGVLTVTLPKGPEQEKRRKIQVQ 162          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|1049544425|gb|ANY58115.1| (Amidohydrolase [uncultured bacterium])

HSP 1 Score: 95.1301 bits (235), Expect = 8.543e-22
Identity = 47/136 (34.56%), Postives = 82/136 (60.29%), Query Frame = 0
Query:   20 DPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEE-EDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRK 154
            DP   FF T            L  G +RG  ++ +   DV E   E +VA + PG+++ED +V  +NNVL +  E++EE+ E E  ++H++ERR+G+ +RS  LPR  + + I A +++GVL + +PK+++++ R+
Sbjct:   36 DPLDRFFDT-----------VLGAGGARGGSLMRAPETDVVETEREIRVATEMPGLRQEDIEVDVENNVLTIRGEKREERSEGEQGKYHLAERRYGTFARSFVLPRDVDAERIEAAFENGVLTVRIPKSEKTQRRR 160          
BLAST of EWM22022.1 vs. NCBI_GenBank
Match: gi|857977739|emb|CEO96288.1| (hypothetical protein PBRA_004959 [Plasmodiophora brassicae])

HSP 1 Score: 93.9745 bits (232), Expect = 9.760e-22
Identity = 40/106 (37.74%), Postives = 70/106 (66.04%), Query Frame = 0
Query:   53 PSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRV 158
            P L ++ KE +N + + ++ PG  K+D  +  +N VL V+ ER+EE+ EE    H SER +G +SRS+RLP+  N D +TA++++G+L +++PK  E+++   I +
Sbjct:   30 PVLKMEFKETDNAYALTVETPGSSKDDIKLKIENGVLTVSAERQEERVEEKEHVHFSERTYGQTSRSIRLPKNINADKVTAKHENGLLLVNIPKQDETKSSDYITI 135          
The following BLAST results are available for this feature:
BLAST of EWM22022.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102430|gb|EWM22022.1|1.617e-113100.00heat shock protein hsp20 [Nannochloropsis gaditana... [more]
gi|1176770500|gb|OQY88376.1|6.387e-2535.21hypothetical protein B6D39_11330 [Anaerolineae bac... [more]
gi|857977738|emb|CEO96287.1|1.446e-2443.56hypothetical protein PBRA_004958 [Plasmodiophora b... [more]
gi|855313877|ref|XP_012898331.1|2.581e-2231.48uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1084619634|gb|OGO72027.1|2.683e-2244.34heat-shock protein Hsp20 [Chloroflexi bacterium RB... [more]
gi|1125579021|gb|OLE86282.1|5.437e-2240.13hypothetical protein AUG08_15150 [Acidobacteria ba... [more]
gi|499236086|ref|WP_010933626.1|5.496e-2234.90heat-shock protein Hsp20 [Chlorobaculum tepidum] >... [more]
gi|506368285|ref|WP_015888004.1|6.610e-2237.40Hsp20/alpha crystallin family protein [Sinorhizobi... [more]
gi|1049544425|gb|ANY58115.1|8.543e-2234.56Amidohydrolase [uncultured bacterium][more]
gi|857977739|emb|CEO96288.1|9.760e-2237.74hypothetical protein PBRA_004959 [Plasmodiophora b... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8680rna8680Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications