rna8680, rna8680 (mRNA) Nannochloropsis gaditana

Overview
Namerna8680
Unique Namerna8680
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length715
Alignment locationKK037249.1:576819..578985 +

Link to JBrowse

Properties
Property NameValue
Productheat shock protein hsp20
Orig transcript idgnl|cribi|Naga_100959g2.5982.mrna
Orig protein idgnl|cribi|Naga_100959g2.5982
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:576819..578985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100959g2gene8413Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8680rna8680-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22022.1cds8651Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8680 ID=rna8680|Name=rna8680|organism=Nannochloropsis gaditana|type=mRNA|length=715bp
GACACCCTCCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTCCTA
CCCCTAGACGAGATCCACCTCGTCCTGGGCGCCGGCCGTGGCGACGGCGC
GATGGACGCAGCGAATCTGCTCAAGCCTATGCTGGCCCGAGGTGAACTTC
GGTGCATCGGCGCCACCACCTTGAAGGAGTACCGCCAGCACGTGGAGAAA
GACCCTGCCTTCGAGCGCCGCTTCCAGCCCGTTCTGGTCGGGGAGCCCTC
GGTCCCGGCCACCATCTCCATCCTGCGCGGCCTCAAAGAGCGGTACGAGA
GCCACCACGGCATTCGCATTACGGACGCCGCTCTTGTCCTCGCCGCGAAA
CTCGCGGACCGCTACATTCAGAACCGGTTCCTCCCCGACAAGGCCATCGA
CCTGGTCGACGAGGCCTGCTCCATGATCCGCGTCCAGCTCGACTCCCGGC
CGGAGCGAATCGACCAGCTCGAGAGGGCGTTGCTGCAGCTGGAGGTGGAG
GCGACGGCCCTGCAGCGCGAGGAGGACGCGCAGTCCAAGGCCCGCCTGAC
CGAGGTGGAGAAGGAGATGGCCAGCATCAAGGACGAGCTGCAGCCCCTCC
AGCTCCGCTACCAAGCCGAGAAGTCCCAAGTGAACGAGCAGCACCGGCTT
CAGAACAAGGTCCTGGAGCTCCAACGGAAGATCTCCGTGGCGATGCGCGA
CCGCGACATGGGCAA
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protein sequence of rna8680

>rna8680-protein ID=rna8680-protein|Name=rna8680|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MALSRYWRDDPLGSNLIERDPFADFFSTGGGWLTPSVGGALSTGTSRGQP
VVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKE
EEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQES
ETRKTIRVS
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mRNA from alignment at KK037249.1:576819..578985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8680 ID=rna8680|Name=rna8680|organism=Nannochloropsis gaditana|type=mRNA|length=2167bp|location=Sequence derived from alignment at KK037249.1:576819..578985+ (Nannochloropsis gaditana)
CACAGGCATCACTCACAATGGTCTTCGCAAAGTGCCATCGTCCCTCACTA
CTCCCACGCGCCTGCGGCTGTGTTGAGGGGTCGCAGCCCCCGACGGGGAT
CGGAGCTTCTAGAAGTTGAAGTTGAGGATCGGCCGTTtcggtggggaggt
taaagcGTTTCCGCTTCTGGAATTTTCAGGCGCGTACATATGGTGTTCTC
TTTTGCATGTCTCCTGTGTTCTGTGCATGTATTTCGTGGATGTGCCGGGA
GCTTTTTTAATACGAACGATATGGCAATTCTTTAAGTGTGTTGACCGCTT
CGCTTTACGCACGAATGTGAACATTTTCCTTCTGTTGTTCTGTCTGCTTT
TTCTTGGAGTTCCGCATGCTATGTTCAACTTTCGCATGTTGGTATGTCTC
ATTCTCCCAAAGTTTGTTTCTCCATAATGTCTCTTTGCGGATAATGCCTA
GGTTAAGTGCTATCCTCTGCATCACATGCATATCGGGCGCGTAACTGTAT
GCTTGTAGGTGACTAGGAAGCCGGAAACTTGTAAATATTTTCACACGCGT
GCCAAACGAGTGTTCGCTACGTGTATCGTTTCTATGAGCTTACGAGATCA
GTGAGATGCGCGTTCGTGAGAGGCTGAGACGTCTCTTTTTCATCCAGACA
TTCCATTATCGCGGTCACATTTTCTTCTTATCTAAAAACATCGCTTCCAT
TCTATCTTCAATTATACACAGCAAAAAGCAAGCTTTCGCTACCTAACATA
CTTTCAAGCAACATGGCACTTTCTCGCTACTGGCGTGACGACCCCCTCGG
CTCCAACCTCATCGAGCGTGACCCTTTTGCCGACTTCTTCAGCACTGGAG
GTAAGCCACTGATCGATATAATACACGGCGTGACATTGCGGAGAGGAATC
CGAGGACGTGATCTTCACTTCAGAAGAAAGCTCGAAGGGTAGACTTATAC
ACATTGGCCGAGATTTATTGATGCATTCTTCTCAGTATTAATTTCATGTA
CGTAAAAACCACACATTTGGATGCCATAACAGGCGGTTGGCTCACACCCA
GTGTCGGTGGAGCTCTCAGCACGGGAACCAGCCGCGGCCAGCCCGttgtc
ccctccttgaacttggacgtgaaggagaagaataATGAGTTCCAGGTGGC
CATCGACGCGCCAGgcatgaaaaaggaaggtgCGTTTGAAGTGTCGGGCC
CCACAGAGGGGTTTGACGACGAAGAaactttccctttcccaccgtgTGCA
ATCTGGTCTCACGCTggccccatccctcctttctacCTGACGCAGACTTT
GACGTGACCTTCGACAACAATGTGCTGCGCGTGGCCTGTgagcgcaagga
ggagaaggaggaggaggacgcacgTTGGCACATTTCGGAGCGACGCTGgg
gatcctcctcccgctcagTGCGCCTGCCCCGCACAGCGAACGGGGACGGC
ATCACGGCGGAGTACGACTCCGGCGTTCTGAAGGTAGGCAGGGGCCGACA
GGGCGGGTTGGAAAGGCTCGAGAAGGGAttggctgctgctgatgcgaTCG
AGAAGCCGCCTGTCGAGATTCCTTTCTTTGTCAGTTTCTCAAGCGCTCTT
TGTTTCCTGGTACCATTTTTAGATCCACGTCCCCAAGACGCAAGAGAGTG
AGACGCGCAAGACCATCCGCGTTTCTTAAACGGAAGGAAGCCTCAGAAGC
GTCGCTCCGGCAATTTGGTGTGCTTCATGCCTCGATATCAGATTAGGTGA
AGATTAGACATAAGTAGGAGAATGAAATTGCACGTTACACAAGTTGTCGT
ATCCGATCAGCGAATTTGAAGACTTTCTAGAAGATTCGAATGTGGTGTGA
TTTTGTCAAGGACGTGTGAGTTCACAGGAGGGCCGGATGTAGGAGACCCC
GGGGATGACAGGAGATTAACGTTCGAAAAAGCATCAGACGGCAATACCGC
CTGCGGGTGTGACAATCAGTAAAGAGGCATAGACACACTGAAATGCAATG
CAAGACATCCATGGAGGGCTCACGTTGACAAGATTGCGTATTTTGTTCTT
TTGTGTTTCAAGTTGCCTCCGTTCATCACAGTCAATGTTCACTCTATACA
AGCCTTCGCCTTGACCTTCTGATCGTCTGGCCACCTGTCCGCGCCCCTAT
CCCTTCAAGAGGTACTG
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Coding sequence (CDS) from alignment at KK037249.1:576819..578985+

>rna8680 ID=rna8680|Name=rna8680|organism=Nannochloropsis gaditana|type=CDS|length=1920bp|location=Sequence derived from alignment at KK037249.1:576819..578985+ (Nannochloropsis gaditana)
ATGGCACTTTCTCGCTACTGGCGTGACGACCCCCTCGGCTCCAACCTCAT
CGAGCGTGACCCTTTTGCCGACTTCTTCAGCACTGGAGGCGGTTGGCTCA
CACCCAGTGTCGGTGGAGCTCTCAGCACGGGAACCAGCCGCGGCCAGCCC
GttgtcccctccttgaacttggacgtgaaggagaagaataATGAGTTCCA
GGTGGCCATCGACGCGCCAGgcatgaaaaaggaagACTTTGACGTGACCT
TCGACAACAATGTGCTGCGCGTGGCCTGTgagcgcaaggaggagaaggag
gaggaggacgcacgTTGGCACATTTCGGAGCGACGCTGgggatcctcctc
ccgctcagTGCGCCTGCCCCGCACAGCGAACGGGGACGGCATCACGGCGG
AGTACGACTCCGGCGTTCTGAAGATCCACGTCCCCAAGACGCAAGAGAGT
GAGACGCGCAAGACCATCCGCGTTTCTTAAATGGCACTTTCTCGCTACTG
GCGTGACGACCCCCTCGGCTCCAACCTCATCGAGCGTGACCCTTTTGCCG
ACTTCTTCAGCACTGGAGGCGGTTGGCTCACACCCAGTGTCGGTGGAGCT
CTCAGCACGGGAACCAGCCGCGGCCAGCCCGttgtcccctccttgaactt
ggacgtgaaggagaagaataATGAGTTCCAGGTGGCCATCGACGCGCCAG
gcatgaaaaaggaagACTTTGACGTGACCTTCGACAACAATGTGCTGCGC
GTGGCCTGTgagcgcaaggaggagaaggaggaggaggacgcacgTTGGCA
CATTTCGGAGCGACGCTGgggatcctcctcccgctcagTGCGCCTGCCCC
GCACAGCGAACGGGGACGGCATCACGGCGGAGTACGACTCCGGCGTTCTG
AAGATCCACGTCCCCAAGACGCAAGAGAGTGAGACGCGCAAGACCATCCG
CGTTTCTTAAATGGCACTTTCTCGCTACTGGCGTGACGACCCCCTCGGCT
CCAACCTCATCGAGCGTGACCCTTTTGCCGACTTCTTCAGCACTGGAGGC
GGTTGGCTCACACCCAGTGTCGGTGGAGCTCTCAGCACGGGAACCAGCCG
CGGCCAGCCCGttgtcccctccttgaacttggacgtgaaggagaagaata
ATGAGTTCCAGGTGGCCATCGACGCGCCAGgcatgaaaaaggaagACTTT
GACGTGACCTTCGACAACAATGTGCTGCGCGTGGCCTGTgagcgcaagga
ggagaaggaggaggaggacgcacgTTGGCACATTTCGGAGCGACGCTGgg
gatcctcctcccgctcagTGCGCCTGCCCCGCACAGCGAACGGGGACGGC
ATCACGGCGGAGTACGACTCCGGCGTTCTGAAGATCCACGTCCCCAAGAC
GCAAGAGAGTGAGACGCGCAAGACCATCCGCGTTTCTTAAATGGCACTTT
CTCGCTACTGGCGTGACGACCCCCTCGGCTCCAACCTCATCGAGCGTGAC
CCTTTTGCCGACTTCTTCAGCACTGGAGGCGGTTGGCTCACACCCAGTGT
CGGTGGAGCTCTCAGCACGGGAACCAGCCGCGGCCAGCCCGttgtcccct
ccttgaacttggacgtgaaggagaagaataATGAGTTCCAGGTGGCCATC
GACGCGCCAGgcatgaaaaaggaagACTTTGACGTGACCTTCGACAACAA
TGTGCTGCGCGTGGCCTGTgagcgcaaggaggagaaggaggaggaggacg
cacgTTGGCACATTTCGGAGCGACGCTGgggatcctcctcccgctcagTG
CGCCTGCCCCGCACAGCGAACGGGGACGGCATCACGGCGGAGTACGACTC
CGGCGTTCTGAAGATCCACGTCCCCAAGACGCAAGAGAGTGAGACGCGCA
AGACCATCCGCGTTTCTTAA
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Synonyms
Publications