rna8669, rna8669 (mRNA) Nannochloropsis gaditana

Overview
Namerna8669
Unique Namerna8669
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3977
Alignment locationKK037249.1:552545..553429 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100052g34.1187.mrna
Orig protein idgnl|cribi|Naga_100052g34.1187
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:552545..553429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g34gene8402Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22062.1cds8642Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8669rna8669-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8669 ID=rna8669|Name=rna8669|organism=Nannochloropsis gaditana|type=mRNA|length=3977bp
GAACCTATGCACACATTCTTCAGGGTCAGACTTCCATGGCAGCACCTCCA
CGCGGAGATGACGGTGAGCCAGCTGAGGGTGGTGACACCATGGTTGATGC
TGGAGGAAGCGCTGCGACTGTCACGAGAGGTGAAGGCGGGGCAACTGAGA
CCTGCAGTACGACTCAAAAAGGAAATTCCACATCACCATCTGAGCCCAAC
GCCACCGTGCTGAGTGTGATACCTACACCGGTGCTGCTTTCTGTGGCTTT
CTCTCCTTTCAAGCGCAAGGCGCCCGGTCTGCCTGTAGATGGGGGCTCCT
CGCCGGTACTTCACTCCTTTTCCTCCCCAAAATCGGCGGTCAAGGACCGG
CTGACCCGGGACCTCCTCACGACCTACCAAGCCTGTAACCCTTCGCACCA
CTTTAATTTTAAGGTGCCGCGGCGAATGCTCACTCACCCCAAGAAGCCCA
TGCTGAATGACGGACTGGACAACGCGGAGGCCAACCTCATCTGTTCCGTG
GGTGACATCCTCTGCGACGCCCGGCGCGGCAGTCGCTTCGCGATACTAGA
TTTGCTGGGCCAAGGCACTTTCGGACAGGTTTTTAAGTGCCAAGAAGAGC
CCCCAGAACGGGGAGGGGGGGTGGACCGGTCTGGCGCAGGCCGACGGTGG
CGATCAAGGTCGTGAAGAACAAGCCGGCGTATCTGCGGCAGGCCCAGTCC
GAGGTGGGAGTGTTGCGACTGCTGAACGAAAAGCACGATCCTGAAGACAA
CAAGCACCTGGTCCGACTCCTGGACTCGTTCACGGACAAGGGGCACCTGT
GCCTCGTCTTTGAGCTCCTAGACATGAATCTGTACGAGCTGCTGAAACAA
AATCAGTTCCGCGGCCTCCCGCTCTCCCTCATTAGGCACTTCGCCTCCCA
GATCCTCGAGGCCTTGGGCGTCATGGAGGAGGCGGGTATCATCCACTGCG
ACCTCAAGCCTGAGAATATTCTGCTCGCGACCACAACATCGCACCGCCCC
CCAAAGCTGACGGTCGCAGACTCACCCACGCCTTCCCGCGCGCGCAGCAG
CAACAGCGCCAAGGAACACAGCAGTGTCAAGGTCATCGACTTCGGCTCAG
CCTGCTTGGAGGGTCGCACCATGTACACCTATATTCAGTCCCGCTTCTAT
CGCTCCCCGGAGATCCTGCTCGGGTTGCCCTACGACGCGGCCATCGACAT
GTGGAGTTTGGGCTGCATCTGCGCCGAAATGTTTCTGGGACTGCCGATCT
TTCCCGGCGTCTCGGAGCACAATCAAATCTCGCGAGTTGTGGAAATGCTT
GGCATGCCTCCCGAGTTCATGCTTGACTGCGGGCAGAACACTTCCAAGTA
CTTCACTCGGCGACGAAGGGCGGACGGGGGGACGGGCAAGGCCGCGCAGG
GGGGGCTCCAGGGGCAGCTTGACGCCTTCCGCGGAGCTCTTCCTGGGCGA
GGGGGGACGATGGCTCTAGCCAAGGTGGGTGAGGAAGAAGTGGCGATGGA
CTCGACGATCGCCGTGCAAGGATCTCCCGGCGCGCACCTGGGTGGCAATC
ATAAATGCAATCTGCCTCTTGATCACGCAGCAACTCTCCCCGCCCCGCAA
CCGCTGCAACAACACCAGAAGGGGCTGCCTTCCACTACTCTTCCCTTCCC
GTCAACCGGATCTACGGTTATGAGAAGAAAATTTGCGCTTAAAACCGCAG
AAGAGTACGCGAGCGACACGCGTACGCCAGTGATAAACTCCAAGAAGTAT
TTCAAGCACAAGCATCTCCCTGACATCGTGCGCTCCTATCCGTTCGGCCG
GCGCCTGGGACCGGAAGACAGCTTCCGAGAGGAGCAAGAGCGTCACCTAT
TCCTGGACCTGGTGCTGGGTTTGTTGGATTTGAACCCCTGGAAGCGCTGG
ACAGCCAAGCAAGCGGCCAGGCATCCCTTCCTACGGGCGGACCAAGATCG
CGACAGGACAGGCGCAGGTCTGCCCTACGAACCTCCTGATAGGCAGGCCG
TCCAGACGCGGCGTTTGCATGCCATGCTTCTGTCGCATCAGCAACGCATC
GACTCTCGCAAAATGGGAGGGAACGTGGCGGAGAAGGGCCTTTGCGTGGC
TGGTACAAGCTCGAGAGGCCCTCCCACGGCATATTTGTCTGCCGCAGCCA
GCAGCGCGGGTCTCCCGCCGCCCTACATCCAGCCGATTCCTTCAGAGCCC
CTGACAGTTCCTCAACCACATTCTCCCGTCGTCTTTTCCGCCCGCACGCC
TGTCGGTCACGCTGAGGAGGGTGAAGGTGTGTCCATTTTCCGTCACGCGG
GGAACGTCACGGGCGGCAATGCGGTCGTCAGTGTGGATGAGAATTTGGTG
CGCTCAGCGCCTGCCTTGAATCGATTGCGGGTCATGAATCGGCGGGCATC
TGTGGGTAGCGCTGGCGCAGCGGGAGTGCTACCGTCCACACCCCAGACTG
CACCTGGCCTCGCCACGTCTGGGGGGGGCAGCAGCATGGCGGGCGACGGC
CCCAGTGGCTCGGGCGTGTCCGGTCCAGAGCACGATCTTTCGCGGTGGAG
TCACCGGGGCGTCCCCCCTGCAGGACTGGGAACGAGCGGGGGTGCGGGGC
ACTTTCTCGCCAAGGGCGCAGAATCTTATACATTTGAGAGTGGCGAGCGC
CTGGGAGCGACTGATTTCGGCTACGCACTACAACGCCCTCAAATGATGAT
GCAATTTTCGCCTCAACAACAGTCTGCTATGTTTGGAAGCAGTCTATCCA
GCAGCGGGGGCTTCAACGTGCGCTCCCCGATGGCCCCTCCTCCAGCCAAT
AGTTGCGGGAACAGGTCTCAGGTTTACCTTCCCGAAGAGCTAGATTTGCC
CCCACCACCATCTATGCAGCAGATGCTCCATCATCATCAACAACAACAGC
AGCATCAGCAGCACTACGCGCTCCAGCACCAGCATACTCAGCACGGGGCT
GCCCTGTCGCCCTCCATGGGCCAGCAGGCCCCATCCGGCATAGAGGGCGA
GTTCGCGGAGTGGGACCCCTTCTTTGCGGAACCCTTGGAGGACGAGACAC
AGGCTCAGCTCCAACAGCAATGCCATGATGGGAGTGGCGCTCGGCCACGC
GCTGCCACCTACGGAGGGAGCTCTCCCCGTCTGCCGCCCATTGGCCATAC
TGGGACTCACCATCACCAATCGCAGACGGAGCAGTCGCATCAACAGCAGT
ACGCCCACTCCCATCACGGGTACGGGCAGCCGTCCTCTCCTCAATACCAC
CTCATCAACCATGCGTCACATAGCACGCCACCAAAGCGTGTCGGACATTT
CTCTTTTCTCCGAAATGGCGGGCCCCCTCGACATCATCGCGGTGGACATG
GCGGCAGCGGCGGTACAGGCGGTGGCAACTATGCAACCTCTCCGAGCAGC
ACAAGCAGCAGTAGTCGACCGCGTTCGTATTCATGGCAAACCCAGGAAGG
GTGTGGCGCTGTTGGCAGCTGTAAAGGTGGTATCGGTGGGGGGGGCGGGG
GAGGAAAAGGTTTGCCGGTAGTTTCGGGCGGCAGAGAAACGGCCGTTTCG
GGTGTATCCGGAAATGGCCCTTCTCCTGGTAGCAGTAATTTCTTTCAGCA
ACTCCCCCGCAATGGAAGTGTCGGTGGCTCTCACGCTTACCTGGCGCCAG
GAGGCGGTTGGACGGTGCGGCGCTGTTCTGTTGGCGCAACGGGACAGGCT
TCCGAGGCCTTCGGCGTCAGTCCTCAGCCGCAGGGCGCTTCAGGTGGGGC
TCTGTCGACCAATGTCGGCGGGTCCAGCAGGAAGCCACCACCGTCCCCCC
GCGGTGCCTTGCGCGCGAGCCCGTCTTTGCCGTCGTCGGGGGAGAAGCCC
CGGTAAGTTGGAATATGACGAGAGGACTTCCACGGCAAACAAAAGAGAAT
CGAAATTTATAACATGGGAGCTGTACTCCTTCGCCCTCATCTCACTCTGA
AACCTAGAAAGTTCTCTCTTTGACGAT
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protein sequence of rna8669

>rna8669-protein ID=rna8669-protein|Name=rna8669|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MYGASLCYARGMTWRTINTIAPQQTTKAGTLSVPRRRLDTALYAYRLFSE
ARYNSPRPDTATPQSTLRHATLSLLNEAEGKPLHNRDIYKGLQDSLPAES
HLKERLTLTYLKTKILRHLREKKYIRSVAVWTEGKKRASYGYVVSRLPKD
FKESKSEMKDEE
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mRNA from alignment at KK037249.1:552545..553429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8669 ID=rna8669|Name=rna8669|organism=Nannochloropsis gaditana|type=mRNA|length=885bp|location=Sequence derived from alignment at KK037249.1:552545..553429- (Nannochloropsis gaditana)
ACAACTTTCGCACGACGGAAACGTGAGGAATTAAGAGTGGTTTTGCATTG
ATAAGTAGCATGCGAGTTTCTAATTTTTACACCTTCTGTAGACATGTATG
TCTCGACTTGGTAGCCTACGGCAACTAGCCTGCTGCCCACCTGTCCTCAC
AGCCTCAGGGTGACGGAGGCGGGATAACCTTGGGGAAAGGTTTGCGAAAC
GGGACAGAAGCTGTGGTGCTAGGCTTACCAAGAATACAATTAGAGGCCGA
CTCAACAGGATCGGACGGGAAATTGGTGTGTGCTGGTTTACTGTTTCAAC
TGACCGGCAGACGTTCATCCCATTTCAACAGATTGTAATCGACGTCTCAA
TGTATGGTGCCTCGTTATGTTATGCTCGTGGTATGACCTGGCGGACAATA
AACACGATCGCGCCCCAACAAACTACGAAAGCGGGGACCCTGTCAGTTCC
AAGAAGGCGCTTAGATACTGCCTTGTATGCTTACCGACTATTCTCTGAGG
CTCGATACAACTCTCCACGCCCTGATACGGCCACGCCTCAGTCCACGTTG
CGGCATGCCACACTTTCGCTTTTGAACGAGGCAGAAGGCAAACCCCTGCA
CAACCGTGATATCTACAAAGGCCTGCAAGACTCCTTGCCCGCCGAGTCAC
ATCTTAAGGAGCGACTTACTCTGACCTATTTGAAGACAAAAATTTTACGG
CATTTGCGGGAAAAAAAGTACATACGATCTGTAGCCGTGTGGACGGAAGG
TAAGAAGAGGGCATCGTACGGCTACGTCGTAAGCAGGCTACCGAAAGACT
TCAAGGAATCAAAGTCAGAAATGAAAGACGAAGAGTAACACTTCATAAAT
AAAAGCAAGATGTTTTGAAAGAGCAAAAATCGATT
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Coding sequence (CDS) from alignment at KK037249.1:552545..553429-

>rna8669 ID=rna8669|Name=rna8669|organism=Nannochloropsis gaditana|type=CDS|length=489bp|location=Sequence derived from alignment at KK037249.1:552545..553429- (Nannochloropsis gaditana)
ATGTATGGTGCCTCGTTATGTTATGCTCGTGGTATGACCTGGCGGACAAT
AAACACGATCGCGCCCCAACAAACTACGAAAGCGGGGACCCTGTCAGTTC
CAAGAAGGCGCTTAGATACTGCCTTGTATGCTTACCGACTATTCTCTGAG
GCTCGATACAACTCTCCACGCCCTGATACGGCCACGCCTCAGTCCACGTT
GCGGCATGCCACACTTTCGCTTTTGAACGAGGCAGAAGGCAAACCCCTGC
ACAACCGTGATATCTACAAAGGCCTGCAAGACTCCTTGCCCGCCGAGTCA
CATCTTAAGGAGCGACTTACTCTGACCTATTTGAAGACAAAAATTTTACG
GCATTTGCGGGAAAAAAAGTACATACGATCTGTAGCCGTGTGGACGGAAG
GTAAGAAGAGGGCATCGTACGGCTACGTCGTAAGCAGGCTACCGAAAGAC
TTCAAGGAATCAAAGTCAGAAATGAAAGACGAAGAGTAA
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Synonyms
Publications