rna8660, rna8660 (mRNA) Nannochloropsis gaditana

Overview
Namerna8660
Unique Namerna8660
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1263
Alignment locationKK037249.1:528734..529989 -

Link to JBrowse

Properties
Property NameValue
ProductBiotin/lipoate A/B protein ligase
Orig transcript idgnl|cribi|Naga_100052g24.1179.mrna
Orig protein idgnl|cribi|Naga_100052g24.1179
GeneBPL_LplA_LipB
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:528734..529989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
BPL_LplA_LipBgene8393Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8660rna8660-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22054.1cds8633Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8660 ID=rna8660|Name=rna8660|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
AGCAATATGAGAAGGAGAGTCCACAGCCACCGAGCTTTTCCAGCCTGCGC
ACCCTCCTGCCACATCTTGAAGACCTTGAAAGGTGGTGCAGGGGAGGATG
TTGAAGATTAGGCATCGAGCCGAGTTACCAGCCCGGTGAGGTCGAGGGCC
GTCGAGGAGGCCCACCATCCTGCGATATCCTCGCTCATCATCATCATCGC
CACACTCCCATGCGGCCCACGGCCTGGTCGACGCGAAGGCTTGAGACGCA
CAGCCGGTGTCACATAAATATAGAGGGGCACGAGGCTGTGCCTTTACCAA
GTGTTCGATACTTCTCCTTTCTCGGCCATGCATATCATGTTTCCTCTTCT
TTGCATCGCAGGAGAGGGCCCGCCCTCCCCCTCCATGCGGGGAATTGAGC
CTCAAGCACAGCAAGACTCATTCTGAACTCCCGAAATCCAGCTATCGACT
CTGTTCACTCTTCCGTCATGCCTCCGGAGGAGGGGACGACGGGGATCTCT
GCGGCAGGACCACCAACTGCAAGTTCTGAGGGCCCACACCAAACTGAACC
GGCGCAATCGAGGAGCAGTGCCACTCTAAATGCTGTCCAAGCTTTCGTTG
CGTTGAGTCTAAATGCTCCTCTATCGGGTAGCCTTGGACACAACATGAGG
ACAAGCGTCCGCCAAATTGAGCAGCCAAGACCAAATCAGCGGCTCCAGAC
ACAGACCTCGCCTACACATCGTACCTTGCCTCTAAACGAAGCTGTCCCCT
CCACGCGCGCACATACCCCGCCCCCTCTTACTCACTTATGCATGGCCACC
ATTGCTGATAATTGCTCGGGATTGGTTTCTGTGAATGGTTTGGCCGAGGA
ACTCTGCATACGCATATTACGAGAGATCCTGCTCCGGGGCAAGCTAGATT
ACCGCTTGTGCCGTGTCTTCATCGAAAGCGGCCATGAAGAGCTTAGCAAG
GCTGTGTCTAGCCTCAATCTCTTCGACGCGCTGGGATGTGGCAGGCCATC
GGGAGGAGCAGGCCTTGGATCAGATTGTCGGCGTTGAAACTGTGGTCAAC
GTCGCGGTGTTGTGTGATGTAAATAGAGTGCAAAGGCCCCAAGACGGAGG
TCTTCAGCACGCGGAGCGACAAACACATGGAGCAGATCATCTCAAGCAGG
AGGGAGCATTCATTTGCTTGAAGAGCTGAAACACTCGGTACTACCACATG
CGCTAACGGGTGAGGTATAATCAGAAGCGAAGTAAAATAATATATCGAAT
TGATTTTTTTTTG
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protein sequence of rna8660

>rna8660-protein ID=rna8660-protein|Name=rna8660|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
MSTRPALHLLRLRNAVGIKDQLWLEEALLRHDTRNWCLLKDGEPAGGTGR
PTIVLGIGGKPSKLVHLDRVIQDEIPVLRRFSGGGTVIVDQDSLFVTFIM
NTVEVTPNQPYPRPIMEWTAGLYRPVFERLRSAQTKPFELRENDYVFGSL
KFGGNAQSIVKDRWLHHTSFLWDFQRSNMEYLTLPERRPEYRQDRSHSSF
LTSLKDHTPQGDRLALFRELELELGSHFRVQAASEPDVRSDVVERRLGGM
EAWGKKARTRQVSPAEELSKLDNHSRC
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mRNA from alignment at KK037249.1:528734..529989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8660 ID=rna8660|Name=rna8660|organism=Nannochloropsis gaditana|type=mRNA|length=1256bp|location=Sequence derived from alignment at KK037249.1:528734..529989- (Nannochloropsis gaditana)
TCCTTCCCATCGGGGTCGGACAGAGAGGAGCACGAGGGGGAGCCCGGACA
CAGAGATGGTGAAGAAGGCTTCAGCAGCAGCCAGACAGTGGCAAGATCAA
ATGTAGAAAGGCGACATTACATGACGTTCAAATCAAATGCATTTCACAAC
CTATTTCAAGCCTCTTTGCAGAACCCCGAATGCCGGTCTCTTGATCGGAG
ACTAGATGTCGACCAGGCCGGCTCTTCACCTGCTTCGCTTAAGAAACGCA
GTGGGTATTAAGGACCAACTTTGGCTTGAGGAAGCCTTGTTGAGACATGA
TACACGCAATTGGTGCCTCCTTAAAGACGGAGAGCCAGCGGGGGGCACGG
GGCGACCTACCATCGTTTTAGGTATTGGCGGAAAGCCCTCAAAGCTTGTA
CATTTAGACCGCGTAATACAAGACGAAATACCAGTACTACGGCGTTTCTC
GGGAGGAGGAACAGTTATCGTTGATCAAGACTCCCTTTTTGTGACATTTA
TCATGAATACGGTAAGTCTAAATTAAAACTGTTAGGGTTAGGGTTAATTA
AGATAAAACCATGTGGGTATTGCGTTGCAAACGCGTAACTCATGATTATG
GAATGTGGGCTTTCAACAAATTTCTGTCATATCATTGGCTTATCTCATAC
ATCCATTGCTTGGACTTTGAAAGGTTGAGGTCACGCCAAATCAGCCTTAT
CCGAGACCGATAATGGAATGGACGGCGGGCCTTTACAGGCCCGTCTTTGA
ACGCCTAAGATCGGCCCAGACCAAGCCCTTTGAGCTTCGTGAAAACGACT
ACGTGTTTGGATCCTTGAAGTTTGGTGGTAATGCCCAGAGCATAGTCAAA
GACCGATGGCTGCATCACACGTCATTCCTCTGGGACTTCCAGCGTTCAAA
TATGGAGTACTTGACACTGCCAGAGCGGCGGCCCGAGTACCGGCAAGATC
GGAGCCACTCTTCCTTCTTGACAAGTCTAAAGGACCACACGCCTCAGGGA
GATCGACTCGCATTATTTCGGGAATTGGAGCTCGAACTTGGCAGTCACTT
CAGAGTGCAAGCTGCCAGTGAGCCTGACGTGCGGTCAGATGTAGTAGAGA
GAAGGCTTGGTGGGATGGAGGCCTGGGGGAAAAAGGCGCGAACGCGACAG
GTATCACCAGCCGAAGAGCTTTCCAAGCTTGACAACCATTCACGTTGCTG
AAAGCAACGGTACAAGACGTTGTATCACATTGATTTTGAAGTAGCAAAAA
AAAATC
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Coding sequence (CDS) from alignment at KK037249.1:528734..529989-

>rna8660 ID=rna8660|Name=rna8660|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at KK037249.1:528734..529989- (Nannochloropsis gaditana)
GTTGAGGTCACGCCAAATCAGCCTTATCCGAGACCGATAATGGAATGGAC
GGCGGGCCTTTACAGGCCCGTCTTTGAACGCCTAAGATCGGCCCAGACCA
AGCCCTTTGAGCTTCGTGAAAACGACTACGTGTTTGGATCCTTGAAGTTT
GGTGGTAATGCCCAGAGCATAGTCAAAGACCGATGGCTGCATCACACGTC
ATTCCTCTGGGACTTCCAGCGTTCAAATATGGAGTACTTGACACTGCCAG
AGCGGCGGCCCGAGTACCGGCAAGATCGGAGCCACTCTTCCTTCTTGACA
AGTCTAAAGGACCACACGCCTCAGGGAGATCGACTCGCATTATTTCGGGA
ATTGGAGCTCGAACTTGGCAGTCACTTCAGAGTGCAAGCTGCCAGTGAGC
CTGACGTGCGGTCAGATGTAGTAGAGAGAAGGCTTGGTGGGATGGAGGCC
TGGGGGAAAAAGGCGCGAACGCGACAGGTATCACCAGCCGAAGAGCTTTC
CAAGCTTGACAACCATTCACGTTGCTGAATGTCGACCAGGCCGGCTCTTC
ACCTGCTTCGCTTAAGAAACGCAGTGGGTATTAAGGACCAACTTTGGCTT
GAGGAAGCCTTGTTGAGACATGATACACGCAATTGGTGCCTCCTTAAAGA
CGGAGAGCCAGCGGGGGGCACGGGGCGACCTACCATCGTTTTAGGTATTG
GCGGAAAGCCCTCAAAGCTTGTACATTTAGACCGCGTAATACAAGACGAA
ATACCAGTACTACGGCGTTTCTCGGGAGGAGGAACAGTTATCGTTGATCA
AGACTCCCTTTTTGTGACATTTATCATGAATACGGTTGAGGTCACGCCAA
ATCAGCCTTATCCGAGACCGATAATGGAATGGACGGCGGGCCTTTACAGG
CCCGTCTTTGAACGCCTAAGATCGGCCCAGACCAAGCCCTTTGAGCTTCG
TGAAAACGACTACGTGTTTGGATCCTTGAAGTTTGGTGGTAATGCCCAGA
GCATAGTCAAAGACCGATGGCTGCATCACACGTCATTCCTCTGGGACTTC
CAGCGTTCAAATATGGAGTACTTGACACTGCCAGAGCGGCGGCCCGAGTA
CCGGCAAGATCGGAGCCACTCTTCCTTCTTGACAAGTCTAAAGGACCACA
CGCCTCAGGGAGATCGACTCGCATTATTTCGGGAATTGGAGCTCGAACTT
GGCAGTCACTTCAGAGTGCAAGCTGCCAGTGAGCCTGACGTGCGGTCAGA
TGTAGTAGAGAGAAGGCTTGGTGGGATGGAGGCCTGGGGGAAAAAGGCGC
GAACGCGACAGGTATCACCAGCCGAAGAGCTTTCCAAGCTTGACAACCAT
TCACGTTGCTGAATGTCGACCAGGCCGGCTCTTCACCTGCTTCGCTTAAG
AAACGCAGTGGGTATTAAGGACCAACTTTGGCTTGAGGAAGCCTTGTTGA
GACATGATACACGCAATTGGTGCCTCCTTAAAGACGGAGAGCCAGCGGGG
GGCACGGGGCGACCTACCATCGTTTTAGGTATTGGCGGAAAGCCCTCAAA
GCTTGTACATTTAGACCGCGTAATACAAGACGAAATACCAGTACTACGGC
GTTTCTCGGGAGGAGGAACAGTTATCGTTGATCAAGACTCCCTTTTTGTG
ACATTTATCATGAATACG
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Synonyms
Publications