rna8653, rna8653 (mRNA) Nannochloropsis gaditana

Overview
Namerna8653
Unique Namerna8653
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationKK037249.1:513096..514810 -

Link to JBrowse

Properties
Property NameValue
Productformamidopyrimidine-dna glycosylase
Orig transcript idgnl|cribi|Naga_100052g18.1178.mrna
Orig protein idgnl|cribi|Naga_100052g18.1178
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:513096..514810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g18gene8387Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8653rna8653-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22053.1cds8626Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8653 ID=rna8653|Name=rna8653|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGTTCACTTCTATGATGCACACAGCAACTCTTGATCAGGGGGGCATCGG
TTTCACTCAATGGCCGTGTCCTCCGTATAAAAAACTGAAAAGAGATGCCA
GAAAACTGAGGACAAGAGTCGGTGAGGGACGATACTTTGCCCCACGTCCT
CCTCCGCTGCGTCCTCGCACATACATATCTATGTTCTTTGCAATGTCGGG
CCTGAAGACAGTAATGCGTGTGTCGCCCGAGTTGGCCAAAGTGCTTGGCG
GCGACCGCATGGCCCGTACTGAGGCCGTCAAGCGCATCTGGTCGTACATT
AAGGACAAGAAGCTGCAAAACCCCTCCAACAAGCGAGAAATTGTATGTGA
CAACTCCCTAAAAGCGGTCTTTGAGAAGGACAGCGTCACGATGTTCGAGA
TGAATAAGCTCATGAGTAAGCATTTCAGCAAGCCTATCGGCACACCCAGC
CGCGTATTGAACAGTGTCTTGAAGCATTCGCGGACTTAA
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protein sequence of rna8653

>rna8653-protein ID=rna8653-protein|Name=rna8653|organism=Nannochloropsis gaditana|type=polypeptide|length=389bp
MITRHCSLLPRSLRLDSVLLVTLLLILVSSFSKTSAYSFRLRMVEGHGCH
RVVAAHRRLLLGHVFQATSPNGRFLEGAKLIDGKRLARVEAVGKNLFYFW
TPAAILPGTPPPPVVKRGTGKRKPIEIATSSEETVVMHVHFGMSGAFSVS
PFPGKVATPTTRLFLVNKERNLTASLSAMTCVHGGLELFEGKLEALGPDP
LREDADKERLWGKMQATSKAIGQILMDQSCVAGIGNIYRAEILFKSGVHP
EQPANTVAHAAFETLWMHSVLLLQRGFTSGSILTVDPSEASRLGPPWTRR
YIYNHSHCGRCGSRIQNWSMAGRTATQEQTAAPGQPQNRVGSGCSRHRSN
GLDGEYTSRGKRVTEKQGQRESSTGSSISTLYMYTVASA
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mRNA from alignment at KK037249.1:513096..514810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8653 ID=rna8653|Name=rna8653|organism=Nannochloropsis gaditana|type=mRNA|length=1715bp|location=Sequence derived from alignment at KK037249.1:513096..514810- (Nannochloropsis gaditana)
ATGATCACGAGACATTGCAGCTTGTTGCCGCGTTCCCTACGGCTTGATTC
GGTACTTCTGGTGACTCTTCTTTTAATACTTGTGTCCAGCTTTTCGAAGA
CCTCTGCTTACAGCTTCCGTTTACGAATGGTAGAGGGACACGGCTGTCAT
CGAGTTGTCGCGGCGCATCGTCGCCTCTTGCTAGGGCATGTGTTTCAGGC
CACATCTCCAAATGGCCGCTTTTTAGAAGGGGCAAAGCTGATCGATGGAA
AACGCCTTGCGCGTGTAGAGGCCGTGGGAAAGAATCTTTTCTACTTCTGG
ACACCGGCTGCTATCTTGCCAGGTACTCCTCCTCCACCGGTGGTGAAGCG
AGGAACGGGAAAAAGAAAGCCTATTGAGATAGCCACTAGCTCAGAAGAAA
CTGTGGTTATGCATGTCCATTTCGGAATGAGTGGGGCCTTCTCTGTCTCT
CCCTTTCCGGGCAAGGTGGCCACTCCGACCACGCGGTTGTTTCTTGTGAA
CAAGGAGCGGAACCTCACAGCGTCGCTCTCTGCAATGACTTGCGTGCATG
GTGGTCTTGAATTGTTCGAGGGGAAGCTTGAGGCTCTAGGCCCCGATCCA
TTGCGCGAGGACGCCGACAAGGAGAGGCTGTGGGGAAAGATGCAGGCCAC
GAGCAAGGCGATCGGGCAGATCCTTATGGACCAGTCCTGTGTAGCGGGCA
TCGGAAATATCTACCGAGCCGAGATTCTCTTCAAGAGCGGGGTCCACCCT
GAGCAGCCGGCCAACACCGTCGCCCACGCCGCGTTCGAGACGCTCTGGAT
GCACTCGGTGCTCTTGCTGCAGCGCGGCTTCACCTCCGGCAGCATCCTTA
CTGTCGACCCGTCCGAAGCCTCCCGGCTCGGCCCACCCTGGACTCGGCGG
TATATCTACAACCACAGTCATTGCGGGCGCTGCGGCTCTCGCATCCAAAA
CTGGTCCATGGCCGGGCGCACTGTGTACTGCTGCCCGAGCTGTCAGCCCC
TGTCCCCGGGAACCCAACTGGCCGCTTCTCGGAAACAAGCCGTGGCGGTC
TCCACCGGTGTGACGGAGTTCGTCTCGCATTGTGCAGGGGAGGACGCGGC
CACTCTCACCCCCGCTAAGATGACCGTGCCCGTGCTGCGGGCCAAGCTGG
AGGCCCTGGGCTTGCCTGTCGCCGGGAGGAAGGCGGAGCTGGTCGCTCGA
CTCACCGACGGCCTGCTCGTTGCGCAGGCCCCAGTCGCAGGGTCTGTGAA
AGAAGAGCTTGGGAGTCGTACAGGCGGGTGGGTGTCTCGGCTGGCGGTGC
CTTTCACCCCGGTCAAGCCAGGGACCCTCCACCTGCGACGGGTGGCCTCG
GCGCGAGCAGCGGCCCTAGAGAAGGAGCGGGCTGGAGAAAATAGGGCGGT
GGAGCACGTGGCCCTGCATGATGAGGGCGTCGAGACAGAGGTGGAGGCAG
AGAGCGTGGACGTGGTGGAGGAGGTTTGGTGGCATCCCTCGTCGGCCTCG
GATGGTGGGAGTGGAAGGCGACTCAGGAACAAACGGCAGCGCCAGGGCAG
CCCCAAAATAGAGTGGGCAGCGGATGTAGCCGTCATAGATCAAACGGACT
TGATGGAGAGTATACTAGCCGCGGAAAGCGAGTAACAGAAAAACAAGGGC
AAAGGGAGTCGAGTACAGGCTCCTCAATTTCGACTTTGTACATGTATACA
GTTGCGTCTGCGTGA
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Coding sequence (CDS) from alignment at KK037249.1:513096..514810-

>rna8653 ID=rna8653|Name=rna8653|organism=Nannochloropsis gaditana|type=CDS|length=2340bp|location=Sequence derived from alignment at KK037249.1:513096..514810- (Nannochloropsis gaditana)
GCGACTCAGGAACAAACGGCAGCGCCAGGGCAGCCCCAAAATAGAGTGGG
CAGCGGATGTAGCCGTCATAGATCAAACGGACTTGATGGAGAGTATACTA
GCCGCGGAAAGCGAGTAACAGAAAAACAAGGGCAAAGGGAGTCGAGTACA
GGCTCCTCAATTTCGACTTTGTACATGTATACAGTTGCGTCTGCGTGAAT
GATCACGAGACATTGCAGCTTGTTGCCGCGTTCCCTACGGCTTGATTCGG
TACTTCTGGTGACTCTTCTTTTAATACTTGTGTCCAGCTTTTCGAAGACC
TCTGCTTACAGCTTCCGTTTACGAATGGTAGAGGGACACGGCTGTCATCG
AGTTGTCGCGGCGCATCGTCGCCTCTTGCTAGGGCATGTGTTTCAGGCCA
CATCTCCAAATGGCCGCTTTTTAGAAGGGGCAAAGCTGATCGATGGAAAA
CGCCTTGCGCGTGTAGAGGCCGTGGGAAAGAATCTTTTCTACTTCTGGAC
ACCGGCTGCTATCTTGCCAGGTACTCCTCCTCCACCGGTGGTGAAGCGAG
GAACGGGAAAAAGAAAGCCTATTGAGATAGCCACTAGCTCAGAAGAAACT
GTGGTTATGCATGTCCATTTCGGAATGAGTGGGGCCTTCTCTGTCTCTCC
CTTTCCGGGCAAGGTGGCCACTCCGACCACGCGGTTGTTTCTTGTGAACA
AGGAGCGGAACCTCACAGCGTCGCTCTCTGCAATGACTTGCGTGCATGGT
GGTCTTGAATTGTTCGAGGGGAAGCTTGAGGCTCTAGGCCCCGATCCATT
GCGCGAGGACGCCGACAAGGAGAGGCTGTGGGGAAAGATGCAGGCCACGA
GCAAGGCGATCGGGCAGATCCTTATGGACCAGTCCTGTGTAGCGGGCATC
GGAAATATCTACCGAGCCGAGATTCTCTTCAAGAGCGGGGTCCACCCTGA
GCAGCCGGCCAACACCGTCGCCCACGCCGCGTTCGAGACGCTCTGGATGC
ACTCGGTGCTCTTGCTGCAGCGCGGCTTCACCTCCGGCAGCATCCTTACT
GTCGACCCGTCCGAAGCCTCCCGGCTCGGCCCACCCTGGACTCGGCGGTA
TATCTACAACCACAGTCATTGCGGGCGCTGCGGCTCTCGCATCCAAAACT
GGTCCATGGCCGGGCGCACTGCGACTCAGGAACAAACGGCAGCGCCAGGG
CAGCCCCAAAATAGAGTGGGCAGCGGATGTAGCCGTCATAGATCAAACGG
ACTTGATGGAGAGTATACTAGCCGCGGAAAGCGAGTAACAGAAAAACAAG
GGCAAAGGGAGTCGAGTACAGGCTCCTCAATTTCGACTTTGTACATGTAT
ACAGTTGCGTCTGCGTGAATGATCACGAGACATTGCAGCTTGTTGCCGCG
TTCCCTACGGCTTGATTCGGTACTTCTGGTGACTCTTCTTTTAATACTTG
TGTCCAGCTTTTCGAAGACCTCTGCTTACAGCTTCCGTTTACGAATGGTA
GAGGGACACGGCTGTCATCGAGTTGTCGCGGCGCATCGTCGCCTCTTGCT
AGGGCATGTGTTTCAGGCCACATCTCCAAATGGCCGCTTTTTAGAAGGGG
CAAAGCTGATCGATGGAAAACGCCTTGCGCGTGTAGAGGCCGTGGGAAAG
AATCTTTTCTACTTCTGGACACCGGCTGCTATCTTGCCAGGTACTCCTCC
TCCACCGGTGGTGAAGCGAGGAACGGGAAAAAGAAAGCCTATTGAGATAG
CCACTAGCTCAGAAGAAACTGTGGTTATGCATGTCCATTTCGGAATGAGT
GGGGCCTTCTCTGTCTCTCCCTTTCCGGGCAAGGTGGCCACTCCGACCAC
GCGGTTGTTTCTTGTGAACAAGGAGCGGAACCTCACAGCGTCGCTCTCTG
CAATGACTTGCGTGCATGGTGGTCTTGAATTGTTCGAGGGGAAGCTTGAG
GCTCTAGGCCCCGATCCATTGCGCGAGGACGCCGACAAGGAGAGGCTGTG
GGGAAAGATGCAGGCCACGAGCAAGGCGATCGGGCAGATCCTTATGGACC
AGTCCTGTGTAGCGGGCATCGGAAATATCTACCGAGCCGAGATTCTCTTC
AAGAGCGGGGTCCACCCTGAGCAGCCGGCCAACACCGTCGCCCACGCCGC
GTTCGAGACGCTCTGGATGCACTCGGTGCTCTTGCTGCAGCGCGGCTTCA
CCTCCGGCAGCATCCTTACTGTCGACCCGTCCGAAGCCTCCCGGCTCGGC
CCACCCTGGACTCGGCGGTATATCTACAACCACAGTCATTGCGGGCGCTG
CGGCTCTCGCATCCAAAACTGGTCCATGGCCGGGCGCACT
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Synonyms
Publications