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Properties
| Property Name | Value |
|---|
| Product | swib complex baf60b domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100052g17.1171.mrna |
| Orig protein id | gnl|cribi|Naga_100052g17.1171 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:512150..513087 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8652 ID=rna8652|Name=rna8652|organism=Nannochloropsis gaditana|type=mRNA|length=3696bp
ATGGCCACGCCCACCATCAGTGAGACAAAAGGGAAAATTGTGAGTGAGAT
ATGTGATGAGCGGATCAAGAAAAAGCACATTAGTAACGGAAGCAGCCAGG
GCCGTCATGCTGACACAGAGCAGGTTGACCCAGGTCCTGACGGTCCCTCA
TTCACGAGGGGGCCCTTGCCACCAGCCGCGGCTGTCTGCCGTTACAAAGA
GGTCGTTGCGCCTCACGTTGAGTCATTCAATTACTTTTTAGACACTGGTC
TGAGAGAGGCCGTATCTTGCCTTTTCCCTGTGGAACTCCGGCTGAGCAAA
GATGGGGAGTCGGGACCATTGCTGAAATCCTGGGTCGAGGAGTGTGAGAT
CGGGTTCCCCACTGGAGACGGGAGTACGGGATTATATACGCCACGCGAAT
GTCGAGAGCGTGGTCTTATGTACGCAGCGCCTATCCGTGCAGTCTTTCGA
ATCCAACGCGAGGGCGGTGGAGTGATGCGGGTGCAGCGGACGTTGGGGGA
GCTGCCGATCATGGTGTGCTCGAGTCGATGCCGCCTTGCGGGGAAAAAAG
CCGAGGAGCTCGTGGCGCTCAAGGAGGAGGCGTGTGAATGCGGAGGGTAC
TTCATCGTAAACGGCATAGAACGTATCATCCGTCTGCTGCAGTTGCCGCG
GCGGAATCATGCCATGGCCATTTCCCGCAACACATTCAAAGGCCGGGGTA
CTGGATACTCGGACAAGGGCGTGACTATGCGATGCGTGCGGCCAGACCAG
TCTAGCATCACCGTCACACTCCACTACCTAACTAATGGAAATGCCACCTT
TCGGGTCACCATCCTGAAGCAAGAGTTTTTGGTGCCCGTCGTGCTGGTGC
TGAAAGCCCTGCGGGACCTGACGGACGAGGAACTCTACGAGCGCATCACT
TTAGGCGATGAGGACAACACCTACCTGGTCACCCGCGTGGAGATGCTCCT
GCGTGAGTCCCACGACTTCGCTACCTTCTCCCGCAACAAGGCTTTGTCGT
ACCTTGGGTCTCGCTTTCGCACCGTGCTGGGATTGAGCAACGCGCACTCG
GACGCGGACTGTGGGCGAGCCCTTGTGGACCGCTTTGTCTGTATCCATCT
GGGCCATCACGCGGACAAACAGGAATGTCTTTTGCATATGCTCCGGAAGC
TGTACGCCTTTGTGCAGGGCAGGTGTCGGGCGGATAATCCCGACTCCTTC
ATGAACCAGGAGCTCCTCCTACCTGGCCACTTGTACTCGGTGTTCGTGAA
GGAGAAGCTCGAGGAGACGCTCACGGCCGCCTTCCAACAGCTGCGGAAAG
AATGTCGTGAAGACCTGGCTCGAGCGCTGGCGGCCACGCAAGACGAGGCG
TACTGGGCCCAGCTCCTGGGCCGGCACGGGGCGGGTGTGGGGAAGAAGGC
TGCCTACCTGCTCTCGACGGGCAACCTCGTGAGTCGCACGGGCATGGACA
TGATGCAGGTCTCCGGCTACACCATTGTCGCGGAGCGTCTGAATTTCTTT
CGTTTCCTCTCTCATTTCCAATCCGTGCATCGCGGACAATTCTTCACGAC
CATGAAAACCACGGCGGTGCGCAAGCTCCTGCCCGAGTCCTTTGGCTTCC
TGTGCCCCGTCCACACGCCGGACGGCAGTCCCTGCGGCCTTCTGAACCAC
GTGGCCACAGCAGCCCGCGTCCTCTGCCACGAGGATCGCCTGCAGGGCGG
TAGAGTGAGGGGGGGGCTGGCGACAGACCTGTTGGTGGGTTTGGGCGTGT
CACCCGGCGGGGCGGGGAGCGCGGACGGGGCGCTGGTCCTGTCCAAAGAC
CACCTGCCCGTGCTCTTGGATGGCCGAGTGGTGGGCGGCGCTCCTGTCGA
CATTTGTCGCCGCGTGGTACGTGCCCTGCGTCGTTTTAAGGCGGTCTCTG
CGCCCCCCCCGAACCCAGACGCGGTCCAAGGGCCCGACGCGCAGCGGCTT
CGTGGGAAAGGGCGGGTAGACGCGACTCTGGAGGTGGCTTTCATCCATCC
CGTACGGGGGGGTCCAGCGCCGGGACTTTTCCTCTTCTCGGGGGCAGCGC
GGATGGTTCGGCCGGTGCTGCACCTTGAGACGGGCTGCGTCGAGTACATC
GGGCCCATGGAGCAGGTCTTCATGGAGGTGGCCCTGCTCCCCGAGGACGT
GCGGGCGGGCGAGACCACGCACCAGGAGCTTGATCCCACCAACATGCTCT
CTCTGGTAGCATCCCTGACGCCCTTCTCGGACTATAACCAGAGCCCCCGG
AACATGTATCAATGCCAGATGGGCAAGCAGACTATGGGCACGCCCACCAC
CTCCTACCCCCATCGTACCGACAACAAGCTGTACCGAATCCTCACCCCCC
AGGCTCCCATCGTGCAGACACGTCGGCACGCCGAGTATGGGATGGACGAA
TTCCCGCAGGGCACCAACGCGGTAGTTGCAGTCATCTCTTACACAGGCTA
CGACATGGAGGACGCCATGATCCTCTCGAAGGCCTCCTACGACCGGGGTA
TGGCCGCCGCCGACGTTTACAAGACCAAGTCTGTCAGCTTGCGCCGAGAC
ATGCGGGGTGGCCCCAAACGGCCGGACCTTCGCTTCTCCAACCTACGGAC
CCCCGCCGTCGTGGCCAAGCGCCAGTTCCCAGGCCGCGTCGGCGACCCGC
TGTTCGAGAAGCTCGAGGCGGACGGGCTGCCCGTGGTGGGCACCTGGGTG
AAAGAGGGAGACGTGCTGTACAGCGCGGTGGATAGCCTGACGGGCGAGGT
AGAAGTGGGAAAGCACAAGGAGTCAGAGGTCGCGTGCGTGGAGGCCGTCC
GGCTCCTGGGTCTGGAGGGGACGTCGGGGGCCACGGAGCCGCTGGACACC
GTCTCCATCACCCTCCGGTTCCCTCGTCGGCCGATCATCGGCGACAAATT
CTCCTCCCGGCATGGGCAGAAGGGCGTCCTCTCCATCCTCTGGCCCCAGG
AGGACATGCCCTTTACGGAGTCAGGCATGTCTCCCGACATCATCATCAAC
CCGCATGCCTTTCCCTCCCGCATGACCATTGGTATGCTTATCGAATCCAT
GGCGGGGAAGAGCGGATCCCTGCACGGCATGTACCAGGACGCGACGCCCT
TCTCCTTCCACGAAGACCGGCGGGCCATCGACTATTTCGGCGAGCAGTTG
CGGGCGGCAGGGTACGCTTACTTCGGTTCTGAGCCCCTCTATAGCGGACT
GTCCGGCACGCTCATGCACGCGGACATCTTCATCGGACTGGTGTACTATC
AGCGGCTCCGGCACATGGTCTCAGACAAGTCCCAGGTGCGCGCGACGGGC
CCGGTGAACCAACTCACGCGCCAACCCATCAAGGGGAGGAAGCGACACGG
TGGCATTCGCTTCGGGGAGATGGAACGGGACTCCCTACTTTCACATGGGA
CCTCCTACCTGCTACACGACCGGCTCATGAATTGTTCGGACCGCCACCTC
GCCCACGTGTGCCAGGAGTGTGGGAGCTTGGTGGGCCCCACAATGACGAA
GAGCACTGTGCTATCGGCGGCGCAGGCGGGGACTATGACCGCAGTGGCGG
CTGTCGCGTCTTCTCAGGCCAAGGTAATCTGCCGTGCATGCGGCGGAAAG
GCACGAACGGTTGCACTTCCGTACGTCTTCCGGTACCTAACGAATGAGTT
GGCAGCTATGAATATAAAGCTTCGTCTGGGGCTGAGAGAGGCGTAG back to topprotein sequence of rna8652 >rna8652-protein ID=rna8652-protein|Name=rna8652|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRP
PPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYI
KDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPS
RVLNSVLKHSRT back to topmRNA from alignment at KK037249.1:512150..513087+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8652 ID=rna8652|Name=rna8652|organism=Nannochloropsis gaditana|type=mRNA|length=938bp|location=Sequence derived from alignment at KK037249.1:512150..513087+ (Nannochloropsis gaditana)
ATGTTCACTTCTATGATGCACACAGCAACTCTTGATCGTGTCCTCCCTCG
GACAAGTCGACAAAGCGGTGTTGGCAGCCACCCAGTAAGGTCGGTCGACT
GCTTGATtggcctggagggaagaTAAAAGTCATTTCTGTATGCCCATACT
TTTGTGTGCTATATTTACATATGTATGAGCTTTAATTCATGTAAAATTCT
GCTGTATATGTCACGCACTCTTCGCTAGAGGGGGGCATCGGTTTCACTCA
ATGGCCGTGTCCTCCGTATAAAAAACTGAAAAGAGATGCCAGAAAACTGA
GGACAAGAGTCGGTGAGGGACGATACTTtgccccacgtcctcctccgctg
cgTCCTCGCACATACATATCTATGTTCTTTGTTGGTACCGTCTATATTCA
AGGACACTGTTTCATGCTTTTTGCATCAACTTGACAGGCAATGTCGGGCC
TGAAGACAGTAATGCGTGTGTCGCCCGAGTTGGCCAAAGTGCTTGGCGGC
GACCGCATGGCCCGTACTGAGGCCGTCAAGCGCATGTAAGTCATCATCTC
CCTCCATGAATTTGAATTATTCCACGACTTTGTTTGGCATTGCTTTGTTC
AGGTTCTTTCATCTATGCCCTCACACCACCGCCGTGCGCTCACCGTCTCt
actctccccctccagctgGTCGTACATTAAGGACAAGAAGCTGCAAAACC
CCTCCAACAAGCGAGAAATTGTATGTGACAACTCCCTAAAAGCGGTCTTT
GAGAAGGACAGCGTCACGATGTTCGAGATGAATAAGCTCATGAGTAAGCA
TTTCAGCAAGCCTATCGGCACACCGTAGGAGGAACTTGTGGAGGGGCGAG
CACTGCAAGTGGCCCTTCACAAATCTTCATCATGTCCATATAAAGCAGCC
GCGTATTGAACAGTGTCTTGAAGCATTCGCGGACTTAA back to topCoding sequence (CDS) from alignment at KK037249.1:512150..513087+ >rna8652 ID=rna8652|Name=rna8652|organism=Nannochloropsis gaditana|type=CDS|length=2445bp|location=Sequence derived from alignment at KK037249.1:512150..513087+ (Nannochloropsis gaditana)
ATGTTCACTTCTATGATGCACACAGCAACTCTTGATCAGGGGGGCATCGG
TTTCACTCAATGGCCGTGTCCTCCGTATAAAAAACTGAAAAGAGATGCCA
GAAAACTGAGGACAAGAGTCGGTGAGGGACGATACTTtgccccacgtcct
cctccgctgcgTCCTCGCACATACATATCTATGTTCTTTGCAATGTCGGG
CCTGAAGACAGTAATGCGTGTGTCGCCCGAGTTGGCCAAAGTGCTTGGCG
GCGACCGCATGGCCCGTACTGAGGCCGTCAAGCGCATctgGTCGTACATT
AAGGACAAGAAGCTGCAAAACCCCTCCAACAAGCGAGAAATTGTATGTGA
CAACTCCCTAAAAGCGGTCTTTGAGAAGGACAGCGTCACGATGTTCGAGA
TGAATAAGCTCATGAGTAAGCATTTCAGCAAGCCTATCGGCACACCCAGC
CGCGTATTGAACAGTGTCTTGAAGCATTCGCGGACTTAAATGTTCACTTC
TATGATGCACACAGCAACTCTTGATCAGGGGGGCATCGGTTTCACTCAAT
GGCCGTGTCCTCCGTATAAAAAACTGAAAAGAGATGCCAGAAAACTGAGG
ACAAGAGTCGGTGAGGGACGATACTTtgccccacgtcctcctccgctgcg
TCCTCGCACATACATATCTATGTTCTTTGCAATGTCGGGCCTGAAGACAG
TAATGCGTGTGTCGCCCGAGTTGGCCAAAGTGCTTGGCGGCGACCGCATG
GCCCGTACTGAGGCCGTCAAGCGCATctgGTCGTACATTAAGGACAAGAA
GCTGCAAAACCCCTCCAACAAGCGAGAAATTGTATGTGACAACTCCCTAA
AAGCGGTCTTTGAGAAGGACAGCGTCACGATGTTCGAGATGAATAAGCTC
ATGAGTAAGCATTTCAGCAAGCCTATCGGCACACCCAGCCGCGTATTGAA
CAGTGTCTTGAAGCATTCGCGGACTTAAATGTTCACTTCTATGATGCACA
CAGCAACTCTTGATCAGGGGGGCATCGGTTTCACTCAATGGCCGTGTCCT
CCGTATAAAAAACTGAAAAGAGATGCCAGAAAACTGAGGACAAGAGTCGG
TGAGGGACGATACTTtgccccacgtcctcctccgctgcgTCCTCGCACAT
ACATATCTATGTTCTTTGCAATGTCGGGCCTGAAGACAGTAATGCGTGTG
TCGCCCGAGTTGGCCAAAGTGCTTGGCGGCGACCGCATGGCCCGTACTGA
GGCCGTCAAGCGCATctgGTCGTACATTAAGGACAAGAAGCTGCAAAACC
CCTCCAACAAGCGAGAAATTGTATGTGACAACTCCCTAAAAGCGGTCTTT
GAGAAGGACAGCGTCACGATGTTCGAGATGAATAAGCTCATGAGTAAGCA
TTTCAGCAAGCCTATCGGCACACCCAGCCGCGTATTGAACAGTGTCTTGA
AGCATTCGCGGACTTAAATGTTCACTTCTATGATGCACACAGCAACTCTT
GATCAGGGGGGCATCGGTTTCACTCAATGGCCGTGTCCTCCGTATAAAAA
ACTGAAAAGAGATGCCAGAAAACTGAGGACAAGAGTCGGTGAGGGACGAT
ACTTtgccccacgtcctcctccgctgcgTCCTCGCACATACATATCTATG
TTCTTTGCAATGTCGGGCCTGAAGACAGTAATGCGTGTGTCGCCCGAGTT
GGCCAAAGTGCTTGGCGGCGACCGCATGGCCCGTACTGAGGCCGTCAAGC
GCATctgGTCGTACATTAAGGACAAGAAGCTGCAAAACCCCTCCAACAAG
CGAGAAATTGTATGTGACAACTCCCTAAAAGCGGTCTTTGAGAAGGACAG
CGTCACGATGTTCGAGATGAATAAGCTCATGAGTAAGCATTTCAGCAAGC
CTATCGGCACACCCAGCCGCGTATTGAACAGTGTCTTGAAGCATTCGCGG
ACTTAAATGTTCACTTCTATGATGCACACAGCAACTCTTGATCAGGGGGG
CATCGGTTTCACTCAATGGCCGTGTCCTCCGTATAAAAAACTGAAAAGAG
ATGCCAGAAAACTGAGGACAAGAGTCGGTGAGGGACGATACTTtgcccca
cgtcctcctccgctgcgTCCTCGCACATACATATCTATGTTCTTTGCAAT
GTCGGGCCTGAAGACAGTAATGCGTGTGTCGCCCGAGTTGGCCAAAGTGC
TTGGCGGCGACCGCATGGCCCGTACTGAGGCCGTCAAGCGCATctgGTCG
TACATTAAGGACAAGAAGCTGCAAAACCCCTCCAACAAGCGAGAAATTGT
ATGTGACAACTCCCTAAAAGCGGTCTTTGAGAAGGACAGCGTCACGATGT
TCGAGATGAATAAGCTCATGAGTAAGCATTTCAGCAAGCCTATCGGCACA
CCCAGCCGCGTATTGAACAGTGTCTTGAAGCATTCGCGGACTTAA back to top
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