EWM22046.1, cds8625 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|585102461|gb|EWM22046.1| (swib complex baf60b domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 337.421 bits (864), Expect = 2.534e-117 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRPPPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPSRVLNSVLKHSRT 162 MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRPPPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPSRVLNSVLKHSRT Sbjct: 1 MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRPPPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPSRVLNSVLKHSRT 162
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635530|ref|WP_051242621.1| (hypothetical protein [Azohydromonas australica]) HSP 1 Score: 97.4413 bits (241), Expect = 9.084e-24 Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0 Query: 71 VMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143 ++ SPELA ++G + + RTEA KR+W YIK + LQNP+NKR I+CD +LKAV KD VTMFEM L+SKH S Sbjct: 3 ALKPSPELAAIIGAEPLPRTEATKRLWDYIKQRNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHMS 75
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|805536594|ref|WP_046112550.1| (hypothetical protein [Aquincola tertiaricarbonis]) HSP 1 Score: 97.8265 bits (242), Expect = 1.015e-23 Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0 Query: 72 MRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143 ++ SPELAK++G + +ARTE KR+W YIK LQNP+NKR I+CD +LKAV KD VTMFEM L+ KH S Sbjct: 15 LKPSPELAKIVGDEPLARTEVTKRVWDYIKANNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVGKHLS 86
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635864|ref|WP_051242955.1| (hypothetical protein [Azohydromonas australica]) HSP 1 Score: 97.8265 bits (242), Expect = 1.227e-23 Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0 Query: 71 VMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143 ++ SPELA ++G + + RTEA KR+W YIK + LQNP+NKR I+CD +LKAV KD VTMFEM L+SKH S Sbjct: 27 ALKPSPELAAIIGAEPLPRTEATKRLWDYIKQRNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHMS 99
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635543|ref|WP_051242634.1| (DNA topoisomerase III [Azohydromonas australica]) HSP 1 Score: 97.4413 bits (241), Expect = 1.795e-23 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0 Query: 72 MRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143 ++ SP+LA ++G D + RTEA KR+W YIK LQNP+NKR I+CD +LKAV KD VTMFEM L+SKH + Sbjct: 28 LKPSPDLAAIIGADPLPRTEATKRLWDYIKQHNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHLA 99
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|508778102|gb|EOY25358.1| (SWIB/MDM2 domain superfamily protein [Theobroma cacao]) HSP 1 Score: 97.4413 bits (241), Expect = 2.558e-23 Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0 Query: 67 GLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFE-KDSVTMFEMNKLMSKHFSK 144 GL +M VSP+L + LG +RTEAVK+IW YIK KLQNP+NKREI+CD LK +F KDSV MFE+ KL+S HF K Sbjct: 37 GLMRMMPVSPQLGEFLGASESSRTEAVKKIWGYIKLHKLQNPANKREILCDEKLKRIFAGKDSVGMFEITKLLSPHFVK 115
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|1063478008|ref|XP_007040857.2| (PREDICTED: upstream activation factor subunit UAF30 [Theobroma cacao]) HSP 1 Score: 97.4413 bits (241), Expect = 2.730e-23 Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0 Query: 67 GLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFE-KDSVTMFEMNKLMSKHFSK 144 GL +M VSP+L + LG +RTEAVK+IW YIK KLQNP+NKREI+CD LK +F KDSV MFE+ KL+S HF K Sbjct: 37 GLMRMMPVSPQLGEFLGASESSRTEAVKKIWGYIKLHKLQNPANKREILCDEKLKRIFAGKDSVGMFEITKLLSPHFVK 115
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635206|ref|WP_051242297.1| (DNA topoisomerase III [Azohydromonas australica]) HSP 1 Score: 95.9005 bits (237), Expect = 8.117e-23 Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0 Query: 53 LRPRTYISMFFAMSGLKT--------VMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143 LRP Y + FA++ T ++ S ELA ++G D + RTEA KR+W YIK LQNP+NKR I+CD++LKAV KD VTMFEM L+SKH + Sbjct: 2 LRP-IYTAGAFALAKTDTQTNSAFMKSLKPSRELAAIIGADPLPRTEATKRLWDYIKQHNLQNPANKRNILCDDALKAVMGKDEVTMFEMTGLVSKHLA 99
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|948013400|ref|WP_056672749.1| (hypothetical protein [Pseudorhodoferax sp. Leaf265] >gi|944852856|gb|KQP03138.1| hypothetical protein ASF45_18095 [Pseudorhodoferax sp. Leaf265]) HSP 1 Score: 95.1301 bits (235), Expect = 1.097e-22 Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 0 Query: 72 MRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143 +R S LA+V+G + +ARTEA K++W YIK +KLQNP+NKR I+CD++LKAV KD VTMFEM L+ KH + Sbjct: 17 LRPSEALARVVGAEPIARTEATKKLWDYIKAQKLQNPANKRNILCDDALKAVMGKDEVTMFEMTGLVGKHLA 88
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|759621285|ref|WP_043339344.1| (hypothetical protein [Belnapia moabensis]) HSP 1 Score: 95.5153 bits (236), Expect = 1.628e-22 Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 0 Query: 66 SGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHF 142 + L+ ++ S ELA V+GGD +AR EAV ++W+YIK KLQNP + REI+ D+ L+ VF KD VTMFEMNK ++KH Sbjct: 36 NALQQPLKPSEELAAVVGGDELARGEAVSKVWAYIKANKLQNPKDGREIIADDKLRKVFGKDKVTMFEMNKHLAKHL 112 The following BLAST results are available for this feature:
BLAST of EWM22046.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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