EWM22046.1, cds8625 (CDS) Nannochloropsis gaditana

Overview
NameEWM22046.1
Unique Namecds8625
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:512150..512186 +
Alignment locationKK037249.1:512378..512529 +
Alignment locationKK037249.1:512587..512684 +
Alignment locationKK037249.1:512815..512973 +
Alignment locationKK037249.1:513045..513087 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22046.1
Productswib complex baf60b domain-containing protein
Orig transcript idgnl|cribi|Naga_100052g17.1171.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:512150..512186 +
KK037249.1supercontigKK037249.1:512378..512529 +
KK037249.1supercontigKK037249.1:512587..512684 +
KK037249.1supercontigKK037249.1:512815..512973 +
KK037249.1supercontigKK037249.1:513045..513087 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR019835SWIB_domain
Homology
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|585102461|gb|EWM22046.1| (swib complex baf60b domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 337.421 bits (864), Expect = 2.534e-117
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRPPPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPSRVLNSVLKHSRT 162
            MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRPPPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPSRVLNSVLKHSRT
Sbjct:    1 MFTSMMHTATLDQGGIGFTQWPCPPYKKLKRDARKLRTRVGEGRYFAPRPPPLRPRTYISMFFAMSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKPIGTPSRVLNSVLKHSRT 162          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635530|ref|WP_051242621.1| (hypothetical protein [Azohydromonas australica])

HSP 1 Score: 97.4413 bits (241), Expect = 9.084e-24
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0
Query:   71 VMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143
             ++ SPELA ++G + + RTEA KR+W YIK + LQNP+NKR I+CD +LKAV  KD VTMFEM  L+SKH S
Sbjct:    3 ALKPSPELAAIIGAEPLPRTEATKRLWDYIKQRNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHMS 75          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|805536594|ref|WP_046112550.1| (hypothetical protein [Aquincola tertiaricarbonis])

HSP 1 Score: 97.8265 bits (242), Expect = 1.015e-23
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0
Query:   72 MRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143
            ++ SPELAK++G + +ARTE  KR+W YIK   LQNP+NKR I+CD +LKAV  KD VTMFEM  L+ KH S
Sbjct:   15 LKPSPELAKIVGDEPLARTEVTKRVWDYIKANNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVGKHLS 86          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635864|ref|WP_051242955.1| (hypothetical protein [Azohydromonas australica])

HSP 1 Score: 97.8265 bits (242), Expect = 1.227e-23
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0
Query:   71 VMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143
             ++ SPELA ++G + + RTEA KR+W YIK + LQNP+NKR I+CD +LKAV  KD VTMFEM  L+SKH S
Sbjct:   27 ALKPSPELAAIIGAEPLPRTEATKRLWDYIKQRNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHMS 99          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635543|ref|WP_051242634.1| (DNA topoisomerase III [Azohydromonas australica])

HSP 1 Score: 97.4413 bits (241), Expect = 1.795e-23
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0
Query:   72 MRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143
            ++ SP+LA ++G D + RTEA KR+W YIK   LQNP+NKR I+CD +LKAV  KD VTMFEM  L+SKH +
Sbjct:   28 LKPSPDLAAIIGADPLPRTEATKRLWDYIKQHNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHLA 99          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|508778102|gb|EOY25358.1| (SWIB/MDM2 domain superfamily protein [Theobroma cacao])

HSP 1 Score: 97.4413 bits (241), Expect = 2.558e-23
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0
Query:   67 GLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFE-KDSVTMFEMNKLMSKHFSK 144
            GL  +M VSP+L + LG    +RTEAVK+IW YIK  KLQNP+NKREI+CD  LK +F  KDSV MFE+ KL+S HF K
Sbjct:   37 GLMRMMPVSPQLGEFLGASESSRTEAVKKIWGYIKLHKLQNPANKREILCDEKLKRIFAGKDSVGMFEITKLLSPHFVK 115          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|1063478008|ref|XP_007040857.2| (PREDICTED: upstream activation factor subunit UAF30 [Theobroma cacao])

HSP 1 Score: 97.4413 bits (241), Expect = 2.730e-23
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0
Query:   67 GLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFE-KDSVTMFEMNKLMSKHFSK 144
            GL  +M VSP+L + LG    +RTEAVK+IW YIK  KLQNP+NKREI+CD  LK +F  KDSV MFE+ KL+S HF K
Sbjct:   37 GLMRMMPVSPQLGEFLGASESSRTEAVKKIWGYIKLHKLQNPANKREILCDEKLKRIFAGKDSVGMFEITKLLSPHFVK 115          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|916635206|ref|WP_051242297.1| (DNA topoisomerase III [Azohydromonas australica])

HSP 1 Score: 95.9005 bits (237), Expect = 8.117e-23
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   53 LRPRTYISMFFAMSGLKT--------VMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143
            LRP  Y +  FA++   T         ++ S ELA ++G D + RTEA KR+W YIK   LQNP+NKR I+CD++LKAV  KD VTMFEM  L+SKH +
Sbjct:    2 LRP-IYTAGAFALAKTDTQTNSAFMKSLKPSRELAAIIGADPLPRTEATKRLWDYIKQHNLQNPANKRNILCDDALKAVMGKDEVTMFEMTGLVSKHLA 99          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|948013400|ref|WP_056672749.1| (hypothetical protein [Pseudorhodoferax sp. Leaf265] >gi|944852856|gb|KQP03138.1| hypothetical protein ASF45_18095 [Pseudorhodoferax sp. Leaf265])

HSP 1 Score: 95.1301 bits (235), Expect = 1.097e-22
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   72 MRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFS 143
            +R S  LA+V+G + +ARTEA K++W YIK +KLQNP+NKR I+CD++LKAV  KD VTMFEM  L+ KH +
Sbjct:   17 LRPSEALARVVGAEPIARTEATKKLWDYIKAQKLQNPANKRNILCDDALKAVMGKDEVTMFEMTGLVGKHLA 88          
BLAST of EWM22046.1 vs. NCBI_GenBank
Match: gi|759621285|ref|WP_043339344.1| (hypothetical protein [Belnapia moabensis])

HSP 1 Score: 95.5153 bits (236), Expect = 1.628e-22
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 0
Query:   66 SGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHF 142
            + L+  ++ S ELA V+GGD +AR EAV ++W+YIK  KLQNP + REI+ D+ L+ VF KD VTMFEMNK ++KH 
Sbjct:   36 NALQQPLKPSEELAAVVGGDELARGEAVSKVWAYIKANKLQNPKDGREIIADDKLRKVFGKDKVTMFEMNKHLAKHL 112          
The following BLAST results are available for this feature:
BLAST of EWM22046.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102461|gb|EWM22046.1|2.534e-117100.00swib complex baf60b domain-containing protein [Nan... [more]
gi|916635530|ref|WP_051242621.1|9.084e-2458.90hypothetical protein [Azohydromonas australica][more]
gi|805536594|ref|WP_046112550.1|1.015e-2359.72hypothetical protein [Aquincola tertiaricarbonis][more]
gi|916635864|ref|WP_051242955.1|1.227e-2358.90hypothetical protein [Azohydromonas australica][more]
gi|916635543|ref|WP_051242634.1|1.795e-2358.33DNA topoisomerase III [Azohydromonas australica][more]
gi|508778102|gb|EOY25358.1|2.558e-2360.76SWIB/MDM2 domain superfamily protein [Theobroma ca... [more]
gi|1063478008|ref|XP_007040857.2|2.730e-2360.76PREDICTED: upstream activation factor subunit UAF3... [more]
gi|916635206|ref|WP_051242297.1|8.117e-2349.49DNA topoisomerase III [Azohydromonas australica][more]
gi|948013400|ref|WP_056672749.1|1.097e-2258.33hypothetical protein [Pseudorhodoferax sp. Leaf265... [more]
gi|759621285|ref|WP_043339344.1|1.628e-2254.55hypothetical protein [Belnapia moabensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8652rna8652Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications