rna8641, rna8641 (mRNA) Nannochloropsis gaditana

Overview
Namerna8641
Unique Namerna8641
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1827
Alignment locationKK037249.1:488768..490887 +

Link to JBrowse

Properties
Property NameValue
Productplasma membrane intrinsic protein
Orig transcript idgnl|cribi|Naga_100052g4.1177.mrna
Orig protein idgnl|cribi|Naga_100052g4.1177
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:488768..490887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g4gene8376Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8641rna8641-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22052.1cds8614Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8641 ID=rna8641|Name=rna8641|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp
CGCTTTATCTATCCACCGCATACCATACAGGGACACAAAAGTACTTGTGA
ATTTCGCTGTATCTTTACGCGTCGAGGGGGCTACTAAAGTCTGCGTAGGC
CATCGATGGACAGGGGGGGGCAGGAGGCCGCACGCTTCTTCATCATACTG
TTCGCCAATCTTCCAATGGGGGTTTGCGGTTTTGGAGACGCTGTGGTAAT
GCATATTGCGCTGACGATATGTAGCATGGTAAGCATAAGTAGCATGCGGC
TCCATAAGATATGATGCATGCATTTTCTCGGAAGGAAATATTTCTGAGGG
TCCTCAAACTTCACAGGAAGGGTGGGTATCAGGAGGCATAGGACGTATCT
GGTTCGGACCTCTCTCGTAGCTTTTATATCTTTTTCCGATTTTGTGCGAC
TGAACCGTGTTATTCATGCATCTCATACGTATTATTCTTTCGCTGGCAAA
TTCGCAATCTCTCGCTTTCCAACCTCCGTGTCAAGCTGACCTCTGTGTCA
CCCATTTCCATCTTCGGTTTCATTCCATCCGTAATTCTCACCAGAACTTT
CCCGGCGTGTGCTCCTCCACGATCTCGGAAGCGGTTTACAATCTTACCGT
CGGGGGCCTTGCTGCCATGGCTGTGCAAAGCGCCTTGATATGGCGGGAGG
TTAACTGGCAGCTTGTTCGCCTCCTTCTTTGGCCTATTCTTTTCGGCACC
GGTCTGGGCTTGGTTGCTCTCTATCACGTCCACTCCCTCTGGCTCAAGCG
GGTGCTGGGCCTCGTCTTCCTGTCGGTCGGGGCCTACCAGATCCCTGCAG
AGGTGCTCCGCGCCAAGGGGCTGTCGGGGGGGCACGATGGTAAACAGGGG
CAGGTGCTAGTGGAAGGGGAGGAGAGGGCGGGGCTGCGACGATTGGGGAG
GGTGTTGGGACTTGCCTCGGGGTTTTTAGCAGGACTTTTTGGGACGGGGG
GGGCGCCTCTGATGATCCTGGTGGCGGCGACGGGGGTAGAGAAAGACGAG
TGGCGCGCGAGCAATGCCGTGATATGGCTGGTGGATAATGTCTTCCGCTT
ATTGTACTTGCAGGCTGTGCAAAGGCAGATATCCCTCCCCGATGACGCCT
CTCGGCTTCTCCTTCTCATGTTGGCCGGGGGCCTGGGGGTCGGGGCGGGC
TCTGCCCTCTCTTCCTTCGTGGATGTGGCACTGTTCCGGCGCCTCCTCAT
CCTGCTCATGCTCCTTGGTGCCAACGTGATGCTCTTCGCGGGCAGACCCT
TGCGAACAGCCGTGGTCGGCGTGTGTGCCGTCTCTCTCTTCTTCCTCCTC
TACCTGCTCGCTCTCTGGCGTCAACCCTCAGGCCCCGGCCCCTGGGCGTC
CTTGTTGGCTGCCGCGGGGCTGGCTGCAAAGAGCTCGAGCGTGGAAGATT
GGGTCCCGCAGCGATGGGTGGGTAAATCGGGCTATAGCAGGGTGGCGACA
CAAGCGGAGGAGGAGCGAGAGGAGGGCCGAGGCGGAGACGGGAACGGAAA
GCCGCGTCAGGGACCGGCTTTGGAGAATAGAGATGACAAGGACGCCAGGA
TGGAGCACAGAAGAAAACCGGAGATCGAGATGATGGCCGTGTGACGTGGA
CGTCTCTTAAGACCCAAGCGGGCTCTTGGAGAGGGTCTGTGGGAGGCTGT
CATGCGGACCGCGATCGGGTATGGCAAAATGGGCAAAGTACCTGTGCAAA
GGAACGACAAATGAATAAATAAAGCTCGAAAGCAATTTTTGAAAGCGAGT
GAATCCAAATCAAATACTAAGCATTGTTAAACTTTTCAATTTATAAGCAT
AAAATAAGTATAAAATTTATATATTTA
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protein sequence of rna8641

>rna8641-protein ID=rna8641-protein|Name=rna8641|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MVAATRQSAPPGFMVPVDIEPSSPGAQRFEANPPGFMATLPTHTLNTLND
YKEYFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIG
IVAGLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIV
GAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVM
GSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCG
INPARSIGSAAIYGSLVHLWIFVWGPVVGACFAALIYRLIFAPTEVFNEY
FKPENVMARASKGLRTLSGQDRGSN
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mRNA from alignment at KK037249.1:488768..490887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8641 ID=rna8641|Name=rna8641|organism=Nannochloropsis gaditana|type=mRNA|length=2120bp|location=Sequence derived from alignment at KK037249.1:488768..490887+ (Nannochloropsis gaditana)
TTCATTCATGCCGCCACTTAAAAATATTCGATTCTTGGTCAAGGGTCACG
CATCTTGATCTGTCGTTCTACGGAAGAGCAAGGCTCTGCTATGATGTCGA
TCACTTGTGTGCTTTCCTTTGTCAATTTATAAGCGAATTACGAAGAACAG
AAAACCACTGCTCAACACAATACTCATTGCGACGTATTCTGAGCAACCAA
TCCCGATAGCTTGGATAACTTGTCTCTACATATGGTGCCATGCATCGCTG
TCGTTAGTTTCGCGTCTACTGGGCCTTTCCTTTATGCATCATTTAATCTC
AAGTCAGAGTATAGTAAAGTTGCCTTACGTTCGGCAGGCGATAGGCGAGA
TAATTATATTGTTAGCATGTCCGGAGGCATCTTGTCATTCACGTTGATGT
CCCTCCTAAATTGTACCTTATCCACTTACAGACATTCCTCCCGTAGCACC
TTTCCCGCGCTGTTAAAAAATGGTCGCGGCCACCCGTCAATCCGCTCCGC
CTGGATTTATGGTGCCAGTCGACATCGagccttcctctccaggtGCGCAG
CGATTCGAGGCCAACCCCCCTGGCTTTATGGCGACGCTTCCTACCCATAC
CCTCAATACCTTGAATGATTACAAGGAGTATTTCATTACGGAAATGAAGC
ACCCGACATTCGCGCAATCCGTAATCGCCGAGTGGTGGGCTACGACGCTT
TTCCTGTTCTTCCTGATCTTGAGCTGCTTGCCGGGAGCGAATGACGGACA
GGAAGTCTTCCGCATCGGAATCGTGGCGGGTCTGACGATCGCCATCCTCG
TCTACGCCTTCTACGCCGTAAGCGGCGGGAATATCAACCCCGCCGTCTCG
CTGGGCCTGGCGCTTTCCGGTCGGATGACAGCTCCTCGCGCCTGCTTCTA
CATCGCCGCGCAGATTGTCGGCGCCATAACAGGCACGGCGATGGCCAAGG
CCGTGAGTCCCCGGGCGTTTGACTTGGGCAAAGGCGGGATGAACGCCTTG
CAGACGCTGGACGTGGACCTGGAGTCTATCGCAATCACGGAGGGCCAAGC
TTTTTTCGCGGAGGTGATGGGCTCGATGCTCTTGGTGCTGGCCGTGCTTT
TCTGCACAGACACGGCCCGCTCGATAGAGCACCCGCACATGACAGCCCTG
ATCCCCCTCGAGATCGGCTTCGTCGTCCTGCTCGCCCACGTGGCCATGAT
CCCGATCGACGGCTGCGGCATCAACCCGGCCCGCTCGATCGGATCGGCGG
CCATCTATGGGTCGCTAGTGCACTTATGGATCTTCGTCTGGGGTCCTGTG
GTAGGTGCGTGCTTCGCCGCCCTTATTTACCGCCTCATATTCGCTCCAAC
GGAGGTCTTCAACGAGTACTTCAAACCTGAAAATGTGATGGCTCGCGCCT
CCAAGGGACTGCGCACGCTATCTGGGCAGGACCGGGGCTCCAAttaagga
agaagcgggatgaaagggagaaaaatagGGCAcatcgggaggggggcgag
gatgaggcccccttttctccaaGTCCTGGCCACCACAAGGGGTTTATGTT
ATGAAATGAAGCAAAGGCGATTCGCATGCAATGGAAGGGCGACCGGAGGT
TGGGGCGGTCCCGAGGTACGCTGCCTGCATGCACTCGGTTGATATGTGAC
TCTTTCAGAATGTTGACCTCGCGGACAGGTAACAGAGAAGGCGAAGCAGA
GCGAATGGACGTTGCAGGAATGGCAAAGTAATATGAGAATGAATTTACAA
ACACCATGAAGATGTGTCTTATGTCTTACAACTGCGGGGGTAAGTGCGTG
GAATTGTCGTTGACTGGGCGGCAGTTGACGTGGACGGCAAAAGAAAGCAC
CAGAGCTGACGCCGTTTCCAAACCCCTTTGGGATGCTTGAGCGCTAAGAT
AGTATTTGGCAGTACTTAAAGCATGTCTTTCATCACAGTGATCCGTGTTT
GTCGAGGACTCCTAGTTTTGTGGATTTGGAAAAAGTGCAAGCGCGTTGCT
CATTCGGACTCTTGCGATGGTTTACGCTGACACAGCGCGTCGAATCCATC
ATTTCTTCAATAGTAGATGGCCTCGAGGAATTTCTAAATAGAAAAAGAAA
TAATTAAAGGCAAGAGCTCG
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Coding sequence (CDS) from alignment at KK037249.1:488768..490887+

>rna8641 ID=rna8641|Name=rna8641|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at KK037249.1:488768..490887+ (Nannochloropsis gaditana)
ATGGTCGCGGCCACCCGTCAATCCGCTCCGCCTGGATTTATGGTGCCAGT
CGACATCGagccttcctctccaggtGCGCAGCGATTCGAGGCCAACCCCC
CTGGCTTTATGGCGACGCTTCCTACCCATACCCTCAATACCTTGAATGAT
TACAAGGAGTATTTCATTACGGAAATGAAGCACCCGACATTCGCGCAATC
CGTAATCGCCGAGTGGTGGGCTACGACGCTTTTCCTGTTCTTCCTGATCT
TGAGCTGCTTGCCGGGAGCGAATGACGGACAGGAAGTCTTCCGCATCGGA
ATCGTGGCGGGTCTGACGATCGCCATCCTCGTCTACGCCTTCTACGCCGT
AAGCGGCGGGAATATCAACCCCGCCGTCTCGCTGGGCCTGGCGCTTTCCG
GTCGGATGACAGCTCCTCGCGCCTGCTTCTACATCGCCGCGCAGATTGTC
GGCGCCATAACAGGCACGGCGATGGCCAAGGCCGTGAGTCCCCGGGCGTT
TGACTTGGGCAAAGGCGGGATGAACGCCTTGCAGACGCTGGACGTGGACC
TGGAGTCTATCGCAATCACGGAGGGCCAAGCTTTTTTCGCGGAGGTGATG
GGCTCGATGCTCTTGGTGCTGGCCGTGCTTTTCTGCACAGACACGGCCCG
CTCGATAGAGCACCCGCACATGACAGCCCTGATCCCCCTCGAGATCGGCT
TCGTCGTCCTGCTCGCCCACGTGGCCATGATCCCGATCGACGGCTGCGGC
ATCAACCCGGCCCGCTCGATCGGATCGGCGGCCATCTATGGGTCGCTAGT
GCACTTATGGATCTTCGTCTGGGGTCCTGTGGTAGGTGCGTGCTTCGCCG
CCCTTATTTACCGCCTCATATTCGCTCCAACGGAGGTCTTCAACGAGTAC
TTCAAACCTGAAAATGTGATGGCTCGCGCCTCCAAGGGACTGCGCACGCT
ATCTGGGCAGGACCGGGGCTCCAAttaa
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Synonyms
Publications