EWM22052.1, cds8614 (CDS) Nannochloropsis gaditana

Overview
NameEWM22052.1
Unique Namecds8614
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:489237..490214 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22052.1
Productplasma membrane intrinsic protein
Orig transcript idgnl|cribi|Naga_100052g4.1177.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:489237..490214 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR022357MIP_CS
IPR023271Aquaporin-like
IPR000425MIP
Homology
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|585102467|gb|EWM22052.1| (plasma membrane intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query:    1 MVAATRQSAPPGFMVPVDIEPSSPGAQRFEANPPGFMATLPTHTLNTLNDYKEYFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVAGLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYGSLVHLWIFVWGPVVGACFAALIYRLIFAPTEVFNEYFKPENVMARASKGLRTLSGQDRGSN 325
            MVAATRQSAPPGFMVPVDIEPSSPGAQRFEANPPGFMATLPTHTLNTLNDYKEYFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVAGLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYGSLVHLWIFVWGPVVGACFAALIYRLIFAPTEVFNEYFKPENVMARASKGLRTLSGQDRGSN
Sbjct:    1 MVAATRQSAPPGFMVPVDIEPSSPGAQRFEANPPGFMATLPTHTLNTLNDYKEYFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVAGLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYGSLVHLWIFVWGPVVGACFAALIYRLIFAPTEVFNEYFKPENVMARASKGLRTLSGQDRGSN 325          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|527188033|gb|EPS60284.1| (plasma membrane intrinsic protein, partial [Genlisea aurea])

HSP 1 Score: 158.688 bits (400), Expect = 6.817e-43
Identity = 102/269 (37.92%), Postives = 145/269 (53.90%), Query Frame = 0
Query:   36 FMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            F    P  T     DYKE      +   E+K  +F ++ IAE+ AT LFL+  IL+ +  +    +   +GI       G  I  LVY+   +SGG+INPAV+ GL L+ +++  RA FYI AQI+GA  G  + K   P  +    GG N + +        A T+GQ   AE++G+ +LV  V   TD  RS    H+  L PL IGF V L H+A IPI G GINPARS+G+A ++    +    W++  GP+VGA  AAL +++I
Sbjct:   15 FSERQPLGTSAQTKDYKEPPPAPLFEPGELKSWSFWRAGIAEFVATFLFLYITILTVVGVSKSKSKCGTVGIQGIAWAFGGAIFALVYSTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVAQILGATAGAGVVKGFGPTLYQSVGGGANQINS--------AFTKGQGLGAEIIGTFVLVYVVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNRPQAWDDHWVYWVGPLVGAGLAALYHQVI 275          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|1117310541|ref|XP_019434980.1| (PREDICTED: aquaporin PIP1-3 [Lupinus angustifolius] >gi|1102689476|gb|OIV89254.1| hypothetical protein TanjilG_24189 [Lupinus angustifolius])

HSP 1 Score: 157.532 bits (397), Expect = 1.922e-42
Identity = 103/280 (36.79%), Postives = 147/280 (52.50%), Query Frame = 0
Query:   25 GAQRFEANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            GA ++    P   A     T +T  DYKE      +   E+   +F ++ IAE+ AT LFL+  +L+ +  A    +   +G+       G  I  LVY    +SGG+INPAV+ GL L+ +++  RA FYI  Q +GAI G  + K   P  ++   GG NAL        S   ++G    AE++G+ +LV  V   TD  R+    H+  L PL IGF V L H+A IPI G GINPARS+G+A IY    +    WIF  GP +GA  AAL ++++
Sbjct:   11 GANKYREEQPIGTAV---QTQDTNKDYKEPPSAPFFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSSNKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQPHQYERLGGGANAL--------SKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHIPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALAALYHQIV 279          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|658309874|ref|NP_001280950.1| (aquaporin PIP1-1 [Malus domestica] >gi|544206069|gb|AGW15994.1| plasma membrane intrinsic protein 1 [Malus domestica])

HSP 1 Score: 157.147 bits (396), Expect = 2.330e-42
Identity = 105/281 (37.37%), Postives = 150/281 (53.38%), Query Frame = 0
Query:   25 GAQRF-EANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            GA +F E  P G  A        T  DYKE      +   E+K  +F ++ IAE+ AT LFL+  +L+ +  +    +   +G+       G TI  LVY    VSGG+INPAV+ GL L+ +++  R+ FYI  Q +GA+ G  + K   P+ ++L  GG NA+            T+G    AE++G+ +LV  V   TD  R+    H+  L PL IGF V L H+A IPI G GINPARS+G+A IY    +    WIF  GP +GA  AAL ++++
Sbjct:   11 GANKFPERQPIGTSA-------QTDKDYKEPPPAPLFEPGELKSWSFWRAGIAEFMATFLFLYITVLTVMGVSRAPNKCASVGVQGIAWAFGGTIFALVYCTAGVSGGHINPAVTFGLFLARKLSLTRSVFYIIMQSLGAMAGAGVVKGFQPKQYELLGGGANAVNH--------GYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKGHAWDDHWIFWVGPFIGAALAALYHQIV 276          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|1162524468|ref|XP_020412285.1| (aquaporin PIP1-2 [Prunus persica])

HSP 1 Score: 155.992 bits (393), Expect = 7.594e-42
Identity = 105/281 (37.37%), Postives = 148/281 (52.67%), Query Frame = 0
Query:   25 GAQRF-EANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            GA +F E  P G  A        T  DYKE      +   E+K  +F ++ IAE+ AT LFL+  +L+ +  +    +   +GI       G +I  LVY+   +SGG+INPAV+ GL L+ +++  RA FYI  Q +GAI G  + K      ++L  GG N +            T+G    AE++G+ +LV  V   TD  R+    H+  L PL IGF V L H+A IPI G GINPARS+G+A IY    +    WIF  GP +GA  AAL +++I
Sbjct:   11 GANKFSERQPIGTSA-------QTDKDYKEPPPAPLFEPGELKSWSFWRAGIAEFIATFLFLYITVLTVMGVSRSRSKCSTVGIQGIAWAFGGSIFALVYSTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQTLGAIAGAGVVKGFQKNQYELLGGGANVVNH--------GYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRAWDDHWIFWVGPFIGAALAALYHQII 276          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|793420885|ref|NP_001292619.1| (probable aquaporin PIP1-4 [Cucumis sativus] >gi|562745002|gb|AHB33474.1| plasma intrinsic protein 1-1 [Cucumis sativus])

HSP 1 Score: 155.992 bits (393), Expect = 8.592e-42
Identity = 106/285 (37.19%), Postives = 149/285 (52.28%), Query Frame = 0
Query:   25 GAQRF-EANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCL----PGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            GA RF E  P G  A     + +   DYKE      +   E+   +F ++ IAE++AT LFL+  +L+ +        DG     +GI       G  I  LVY    +SGG+INPAV+ GL L+ +++  RA FYI  Q +GAI G  + K   P+ ++   GG N +        S   T+G    AE++G+ +LV  V   TD  RS    H+  L PL IGF V L H+A IPI G GINPARS+G+A I+    +    WIF  GP +GA  AAL ++++
Sbjct:   11 GANRFNERQPIGTAA----QSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVTRSKEADGNTCNTVGIQGIARAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVV--------SDGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKAWDDHWIFWVGPFIGAALAALYHQVV 283          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|294461444|gb|ADE76283.1| (unknown [Picea sitchensis])

HSP 1 Score: 155.221 bits (391), Expect = 9.533e-42
Identity = 96/253 (37.94%), Postives = 138/253 (54.55%), Query Frame = 0
Query:   50 DYKEYFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLIFAPT 294
            D  E+++      +F +++IAE+ AT LFL+  I + +  AN  +    +G +      G  I +LVY    VSGG+INPAV+ GL ++ +MT  RA FYI AQ +GA+ G  M KA+    +  G GG N ++       ++A        AE+ G+ +LV  V   TD   +    H+ AL PL +GF V + H+A IPI G GINPARS G+A IYG   S    WIF  GP++GA  AA  ++ +   T
Sbjct:   22 DRNEFYLW-----SFYRAIIAEFVATLLFLYVTIATVIGNANQKKPCGGVGTLGIAWSFGGMIFVLVYCTAGVSGGHINPAVTFGLFVARKMTLNRAVFYIVAQCLGAVCGAGMVKALQKNYYSAGGGGANTVKEGYASETALA--------AEIAGTFVLVYTVFCATDPKSNARDSHVPALAPLSVGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKKSWNDHWIFWVGPLIGATIAAAFHKYVIRAT 261          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|700195462|gb|KGN50639.1| (hypothetical protein Csa_5G199270 [Cucumis sativus])

HSP 1 Score: 155.606 bits (392), Expect = 1.063e-41
Identity = 106/285 (37.19%), Postives = 149/285 (52.28%), Query Frame = 0
Query:   25 GAQRF-EANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCL----PGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            GA RF E  P G  A     + +   DYKE      +   E+   +F ++ IAE++AT LFL+  +L+ +        DG     +GI       G  I  LVY    +SGG+INPAV+ GL L+ +++  RA FYI  Q +GAI G  + K   P+ ++   GG N +        S   T+G    AE++G+ +LV  V   TD  RS    H+  L PL IGF V L H+A IPI G GINPARS+G+A I+    +    WIF  GP +GA  AAL ++++
Sbjct:   11 GANRFTERQPIGTAA----QSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVTRSKEADGNTCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVV--------SDGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKAWDDHWIFWVGPFIGAALAALYHQVV 283          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|645254113|ref|XP_008232887.1| (PREDICTED: aquaporin PIP1-2-like [Prunus mume])

HSP 1 Score: 155.606 bits (392), Expect = 1.226e-41
Identity = 104/281 (37.01%), Postives = 148/281 (52.67%), Query Frame = 0
Query:   25 GAQRF-EANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            GA +F E  P G  A        T  DYKE      +   E+K  +F ++ IAE+ AT LFL+  +L+ +  +    +   +GI       G +I  LVY+   +SGG+INPAV+ GL L+ +++  RA FYI  Q +GAI G  + K      ++L  GG N +            T+G    AE++G+ +LV  V   TD  R+    H+  L PL IGF V L H+A IPI G GINPARS+G+A IY    +    WIF  GP +GA  AAL ++++
Sbjct:   11 GANKFSERQPIGTSA-------QTDKDYKEPPPAPLFEPGELKSWSFWRAGIAEFIATFLFLYITVLTVMGVSRSRSKCSTVGIQGIAWAFGGSIFALVYSTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQTLGAIVGAGVVKGFQKNQYELLGGGANVVNH--------GYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRAWNDHWIFWVGPFIGAALAALYHQIV 276          
BLAST of EWM22052.1 vs. NCBI_GenBank
Match: gi|766543142|emb|CDX10336.1| (aquaporin [Coffea arabica])

HSP 1 Score: 155.221 bits (391), Expect = 1.328e-41
Identity = 105/277 (37.91%), Postives = 143/277 (51.62%), Query Frame = 0
Query:   28 RFEANPPGFMATLPTHTLNTLNDYKE------YFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVA-----GLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYG---SLVHLWIFVWGPVVGACFAALIYRLI 290
            R  AN   F    P  T     DYKE      +   E++  +F ++ IAE+ AT LFL+  IL+ +  A    +   +G+       G  I  LVY    VSGG+INPAV+ GL L+ +++  RA FYI  Q +GAI G  + K   P  ++   GG N          S   T+G    AE++G+ +LV  V   TD  R+    H+  L PL IGF V L H+A IPI G GINPARS+G+A IY    +    WIF  GP VGA  AAL ++++
Sbjct:    9 RLGANK--FSERQPLGTSAQTKDYKEAPPAPLFEPGELQSWSFWRAGIAEFMATFLFLYITILTVMGVARSNNKCASVGLQGIAWSFGGMIFALVYCTAGVSGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPSLYESKNGGAN--------FVSHGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDGHWIFWVGPFVGAALAALYHQVV 275          
The following BLAST results are available for this feature:
BLAST of EWM22052.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102467|gb|EWM22052.1|0.000e+0100.00plasma membrane intrinsic protein [Nannochloropsis... [more]
gi|527188033|gb|EPS60284.1|6.817e-4337.92plasma membrane intrinsic protein, partial [Genlis... [more]
gi|1117310541|ref|XP_019434980.1|1.922e-4236.79PREDICTED: aquaporin PIP1-3 [Lupinus angustifolius... [more]
gi|658309874|ref|NP_001280950.1|2.330e-4237.37aquaporin PIP1-1 [Malus domestica] >gi|544206069|g... [more]
gi|1162524468|ref|XP_020412285.1|7.594e-4237.37aquaporin PIP1-2 [Prunus persica][more]
gi|793420885|ref|NP_001292619.1|8.592e-4237.19probable aquaporin PIP1-4 [Cucumis sativus] >gi|56... [more]
gi|294461444|gb|ADE76283.1|9.533e-4237.94unknown [Picea sitchensis][more]
gi|700195462|gb|KGN50639.1|1.063e-4137.19hypothetical protein Csa_5G199270 [Cucumis sativus... [more]
gi|645254113|ref|XP_008232887.1|1.226e-4137.01PREDICTED: aquaporin PIP1-2-like [Prunus mume][more]
gi|766543142|emb|CDX10336.1|1.328e-4137.91aquaporin [Coffea arabica][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8641rna8641Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications