rna8635, rna8635 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8635
Unique Name	rna8635
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2650
Alignment location	KK037249.1:477526..479174 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100244g8.1331.mrna
Orig protein id	gnl\|cribi\|Naga_100244g8.1331
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:477526..479174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100244g8	gene8370	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8635	rna8635-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22066.1	cds8608	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:477526..479174+
coding sequence from alignment at KK037249.1:477526..479174+

mRNA sequence

>rna8635 ID=rna8635|Name=rna8635|organism=Nannochloropsis gaditana|type=mRNA|length=2650bp
AGCCCGGCTTCAGTATTTAAAGCGATCACCTTACTCATCGGCTTGAACGC
CTTGACAGGACACATTCGAGTAAGCTTTCATCTTCCCGGCAATGTCATCT
CTCAAGCGCGACCACGAAAATGGGCATGTCGTGGATGATGGCGAGCAGCA
AGTGAAACGGGCGAAGATGGATGTAAGAGAGGAGGAGAAAGAGGCGGGGC
CGCCGCCCGAGGAGGCCTTGCGCATCGCGGAGATTGCGGCGCGGGCTGAA
GCTAGGGCTGCCGCGAGAGCGTCGGCAACAGGGAGTAATGGAGGGAGAGA
TGCAGGAGGGAACGGTGGAGCGGGAGGGATTGCGAAAGGGAACGATAAGC
TTCCGCCTTTGCCAACCCTGATTGAAGGGGGAGCGCATGAGGTGAAGTTT
CTGACCAAGAAACAACGGGAGCAACTGGCGTTGCAGAAATTGCAGGAGAA
GCGGGCAGCAGAAGCCCCGAGTGTGAAGAGGACCGGTATGGCAATGAAGG
ATGTCGGCAAGGGTGGCAGTGCGGGGGATGGAGGCATGGGTCCGCCCCGG
CCCGGGTCGCACCGGGACCGCGACGGGCGAGAGGGAAGCCGGGAAGGAGG
CTGGAGGGATGGGGCCCGTGGGAGGGCTTCCGATCGTGGAGCTAGGGAGG
AGAGGGAGCGTGGAGGAAGGGGTTTGAGTCGGGAAGAGCGGGAGCGGGAG
CGTTTGGAGCGGCAACGCCAAGAAGAGCTGCAGGCGCTGAAAGACCACTA
TCTGGGGAAGAAGGAGGTGAAGCGGCGCGTGGTGAAGCCCAGCGAGAAGT
TCGCGCGCATTTTCCAGTTTGACTGGGAGGCTTCCGAAGACACGAGCCGG
GACAGCAACCCCCTGTACAACCAGCGGCTGGAGGTGACCCCCTTGTTCGG
GAGGGGGTACGTGGCGGGCGTGGATATGCGGGAGCAGCGGAAGACGAACA
GGTACCTGGAGGCGCTGACGCTGAGACGGCAGGAGGAGGAGCGACGGGCG
GAGGAGGAGGCGGGCGTGAGTCGGGGGGACAGGCGGGACAAGGAGGAAGA
GCGCCGGTCCTTCATGGAGGACATGCGGCGGCGGCGGGAGGCGGAGGCTC
GGGGCATGGAGAGGGCGACGATTGGGGTGCTGGGGCAGCACTGGCGGGAC
AAGAGCTTGGAGAGCATGACCGAGAGGGACTGGCGGATCTTCCGGGAGGA
CTTCGACATCAGCATGCGGGTCGGGCGCCAGCGCGTCTTGCCTCTTCGCA
ACTGGGAGGAGGCGAACCTGCCTGCCAGCTTGCGCAAGACCGTTGAGGGC
ATGGGCTGGAAAGAGCCCTCGCCCATTCAGCGGGCTGCCATCCCGGTGGG
GATGGGCCGCCGGGACATCATAGGGATCGCGGAGACGGGGTCTGGGAAGA
CGGGGGCCTTCGCCATCCCCATGATCAACTACTGCCTGACCCTGCCGGCG
GAGCACCGGACCCGCACGCCGGAGGAAGGGCCGCTGGCTCTGGTCATGGC
GCCAACCCGGGAGCTGGCGGAGCAGATCGAGGCGCAGGTTGCGATTTTGA
TCGAGGGGACGGGTCTGAAGAGTTGCTCGGGCGTGGGGGGAAAGCCCATT
GAGGACCAAGCCTTTGCCCTGCGCGAGGGCGTGGACATATTGATTGGGAC
GCCGGGCAGGCTCAAGGACCTGATCGACTCCCGGTACCTGGTGCTGAACC
AGTGCAACTACATCGTTCTGGACGAGGCGGACAGGATGGTGGACATGGGC
TTCGAGGAGCAGGTGGTGGCCGTGCTCGACACCATGGGAGGCCTCCTGAA
GTCCGAGAACGAGGAGGAGGCGGACCGGCAGGCGGACGCGGCGCAGAAGG
GGGAGCAGCTCTACCGTGTCACCGCCATGTTCTCGGCCACCATGCCGCCG
GCAGTGGAGCGCATCGCTCGGTCCTACCTGAGGGCGCCCGCCACGATCAA
GATCGGAGAGGCCAACAGCGGGAAGAACAAGCGGATCGAGCAACGCCTCA
TCTTCACCACGGAGCCGGGAAAGAGGAAGGCGGTGGTGGATCTCCTGACC
AGCCCGAAGAAAGAGGACAAGTTCATCGTCTTTGTCAACGCCAAGCGGGC
CTGCGATGTGCTGGCTCGGCATCTGGAGCAGACGCGCATCTCCTGCGGGA
TTCTGCATGGGGGCAAGAGCCAGGACCAGCGCGAGGCCAGCCTGGAGGCC
TTTCGAAACGGGGTTTTCACCGTCTTGGTGGCCACAGACGTGGCAGCCCG
AGGCCTGGACATCCCCGACGTCTCGCATGTGATCAATTACGACATGCCCG
CTAAGATAGAGAACTACTGCCACAGGATCGGGCGGACGGGGCGCGCGGGC
AAGGAGGGGCTGGCGACGACGCTCCTGACGGAGAACGACAGCGAGGTCTT
CCACGACTTGAAGAACTACCTGGAATCCACGGACATGAAGGTGCCTCCCG
AGCTTGGGAAGCACGCGGCCGCCCAGCAAGCCCCGGGGACCCGCAACGAG
GACGGCAAGATCATGGGCCAGAAGAGGGACAGCGTCATGTACTCGAAGCG
TTAAGGGGGTATGGCATCGTGCCCAAAAAAGTGCAATGTAAAGATGATCG
AATCCAGTTTTCTGGGGCACAAAAAGGAAACGCGTGCCGGGTGACAGCTT

protein sequence of rna8635

>rna8635-protein ID=rna8635-protein|Name=rna8635|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MTKYPDREWRFSQEDWLKASRLTAGGVTFLLTLSASQFLQGRLLGISAAS
RAATLAGMLSVSTGSMLASWAADEAPATLSVALGWVPEKDRRRKGGVIDK
RGTISSSTFSLLGYDAGKKKERLLGAARTALVGMLLFKGLGGRFSGVAPS
NVAQPGAFFNVRGTLPAGLEYASPKQKRRLDMFGWVYGCHTCGRRQMGDY
VGDHMPPRKVAVEMSRRWWRRLLGIRVKQRFTPQCRPCSSIQSAAVRSDR
RILVYHYLSLRRYHATGAVLEVVSLLPGHGMLDGLIHQNVGRVSTWWRRK
GRAEGDWQ

mRNA from alignment at KK037249.1:477526..479174+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8635 ID=rna8635|Name=rna8635|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp|location=Sequence derived from alignment at KK037249.1:477526..479174+ (Nannochloropsis gaditana)
AAGACGCTCGCCAAGTTTTCCACGCTTTTGTTGACGTCTCCACACTCTTA
TTTTCCTTGTATAGAATGCAATCAAAGCTAAAGCTTGGACAGGAAGACTG
GTGACACTTATGTCACAGTCCCGACGGGCCTCCTGCCTGAGTGTCGCCCG
GACAGACACGACGTTTTCGATACGCCTTCTGACCCCTGCAGCTTTTTCCT
CAACTCTTCGAGTCGTTAAGGAGAGTCTCGACTTGAAATGACAAAGTACC
CCGATAGAGAGTGGCGATTCTCTCAAGAAGACTGGCTCAAGGCCAGTAGG
TTGACCGCGGGTGGAGTtaccttccttctcactctCTCCGCCTCGCAGTT
CTTGCAAGGGCGGCTTCTGGGCATTTCAGCTGCTTCTCGAGCCGCTACCC
TTGCGGGCATGCTTTCAGTGAGCACTGGGTCGATGCTGGCATCATGGGCA
GCGGATGAAGCTCCGGCGACCCTGAGCGTAGCGCTAGGATGGGTACCGGA
AAAGGAccgaaggagaaaaggaggtgtAATCGACAAGCGCGGGACCATTT
CAAGCTCgacattttccctcttgggATACGACGctggaaagaagaaggaa
cgGTTGCTTGGGGCTGCGCGCACAGCCTTGGTGGGCATGCTGCTATTCAA
GGGTCTTGGAGGGCGGTTCAGCGGCGTCGCACCGAGTAACGTGGCACAAC
CGGGCGCCTTCTTTAACGTCCGTGGCACCCTCCCTGCAGGACTGGAGTAC
GCGAGTCCCAAACAGAAACGGCGGTTGGATATGTTTGGGTGGGTGTACGG
CTGCCATACGTGCGGCAGGCGTCAAATGGGAGACTACGTGGGGGACCACA
TGCCGCCAAGGAAGGTGGCAGTGGAGATGAGCCGTcgctggtggcggcgg
ctCTTGGGCATTCGGTGAGAgtgcaggaggggaagggacggaaaAAAAAC
AGGCCATGCCAAGGCGCAATTTTTATTGTCTtgtggggaaaggagagggc
aggacCAGCCCCCGCCAAACGTCGCTCACGcccaccatcccccttcTCGG
CACCCTTTACGATCAACAGAGTCAAGCAGCGCTTCACGCCCCAGTGTCGC
CCATGCTCCAGCATTCAGAGCGCAGCAGTACGCAGCGATCGACGCATTCT
GGTAGGATTGGCCTCCCATCAGTCGCTCGCTGCCACCGTGTCAGCGGCAG
AAGTAAAGGGAAATGATATGTTCCTTGCCACGAATCAAGCTCTTTGACGC
CCTTTTGTCGCATCTCGTATCGACCTTGGTTTTCCCCCCTGGCTTATCAA
acgttctccctctccaatCCAGGTGTATCActatctctccctccggcggT
ACCACGCGACAGGCGCGGTTTTAGAAGTGGTCTCCCTTCTGCCCGGCCAT
GGCATGCTGGATGGACTGATACATCAAAATGTGGGGCGGGTAAGCACCTG
GTGGCGACGTAAGGGGCGTGCGGAGGGAGACTGGCAGTGACGGTGATAAT
GAGTGGTAAAGGGGCCTGACTCTCTGACATGGCGCGGATACCCCGGTCTA
GGATGAGTTTGAAGTCAAAAAACGCAATCAAAAGGTGTGAAAATAACGTA
TGACTGTTGCTGATTGTAGAAGAAATTCAAACCGACAGTTTAATGCTTG

Coding sequence (CDS) from alignment at KK037249.1:477526..479174+

>rna8635 ID=rna8635|Name=rna8635|organism=Nannochloropsis gaditana|type=CDS|length=2781bp|location=Sequence derived from alignment at KK037249.1:477526..479174+ (Nannochloropsis gaditana)
ATGACAAAGTACCCCGATAGAGAGTGGCGATTCTCTCAAGAAGACTGGCT
CAAGGCCAGTAGGTTGACCGCGGGTGGAGTtaccttccttctcactctCT
CCGCCTCGCAGTTCTTGCAAGGGCGGCTTCTGGGCATTTCAGCTGCTTCT
CGAGCCGCTACCCTTGCGGGCATGCTTTCAGTGAGCACTGGGTCGATGCT
GGCATCATGGGCAGCGGATGAAGCTCCGGCGACCCTGAGCGTAGCGCTAG
GATGGGTACCGGAAAAGGAccgaaggagaaaaggaggtgtAATCGACAAG
CGCGGGACCATTTCAAGCTCgacattttccctcttgggATACGACGctgg
aaagaagaaggaacgGTTGCTTGGGGCTGCGCGCACAGCCTTGGTGGGCA
TGCTGCTATTCAAGGGTCTTGGAGGGCGGTTCAGCGGCGTCGCACCGAGT
AACGTGGCACAACCGGGCGCCTTCTTTAACGTCCGTGGCACCCTCCCTGC
AGGACTGGAGTACGCGAGTCCCAAACAGAAACGGCGGTTGGATATGTTTG
GGTGGGTGTACGGCTGCCATACGTGCGGCAGGCGTCAAATGGGAGACTAC
GTGGGGGACCACATGCCGCCAAGGAAGGTGGCAGTGGAGATGAGCCGTcg
ctggtggcggcggctCTTGGGCATTCGAGTCAAGCAGCGCTTCACGCCCC
AGTGTCGCCCATGCTCCAGCATTCAGAGCGCAGCAGTACGCAGCGATCGA
CGCATTCTGGTGTATCActatctctccctccggcggTACCACGCGACAGG
CGCGGTTTTAGAAGTGGTCTCCCTTCTGCCCGGCCATGGCATGCTGGATG
GACTGATACATCAAAATGTGGGGCGGGTAAGCACCTGGTGGCGACGTAAG
GGGCGTGCGGAGGGAGACTGGCAGTGAATGACAAAGTACCCCGATAGAGA
GTGGCGATTCTCTCAAGAAGACTGGCTCAAGGCCAGTAGGTTGACCGCGG
GTGGAGTtaccttccttctcactctCTCCGCCTCGCAGTTCTTGCAAGGG
CGGCTTCTGGGCATTTCAGCTGCTTCTCGAGCCGCTACCCTTGCGGGCAT
GCTTTCAGTGAGCACTGGGTCGATGCTGGCATCATGGGCAGCGGATGAAG
CTCCGGCGACCCTGAGCGTAGCGCTAGGATGGGTACCGGAAAAGGAccga
aggagaaaaggaggtgtAATCGACAAGCGCGGGACCATTTCAAGCTCgac
attttccctcttgggATACGACGctggaaagaagaaggaacgGTTGCTTG
GGGCTGCGCGCACAGCCTTGGTGGGCATGCTGCTATTCAAGGGTCTTGGA
GGGCGGTTCAGCGGCGTCGCACCGAGTAACGTGGCACAACCGGGCGCCTT
CTTTAACGTCCGTGGCACCCTCCCTGCAGGACTGGAGTACGCGAGTCCCA
AACAGAAACGGCGGTTGGATATGTTTGGGTGGGTGTACGGCTGCCATACG
TGCGGCAGGCGTCAAATGGGAGACTACGTGGGGGACCACATGCCGCCAAG
GAAGGTGGCAGTGGAGATGAGCCGTcgctggtggcggcggctCTTGGGCA
TTCGAGTCAAGCAGCGCTTCACGCCCCAGTGTCGCCCATGCTCCAGCATT
CAGAGCGCAGCAGTACGCAGCGATCGACGCATTCTGGTGTATCActatct
ctccctccggcggTACCACGCGACAGGCGCGGTTTTAGAAGTGGTCTCCC
TTCTGCCCGGCCATGGCATGCTGGATGGACTGATACATCAAAATGTGGGG
CGGGTAAGCACCTGGTGGCGACGTAAGGGGCGTGCGGAGGGAGACTGGCA
GTGAATGACAAAGTACCCCGATAGAGAGTGGCGATTCTCTCAAGAAGACT
GGCTCAAGGCCAGTAGGTTGACCGCGGGTGGAGTtaccttccttctcact
ctCTCCGCCTCGCAGTTCTTGCAAGGGCGGCTTCTGGGCATTTCAGCTGC
TTCTCGAGCCGCTACCCTTGCGGGCATGCTTTCAGTGAGCACTGGGTCGA
TGCTGGCATCATGGGCAGCGGATGAAGCTCCGGCGACCCTGAGCGTAGCG
CTAGGATGGGTACCGGAAAAGGAccgaaggagaaaaggaggtgtAATCGA
CAAGCGCGGGACCATTTCAAGCTCgacattttccctcttgggATACGACG
ctggaaagaagaaggaacgGTTGCTTGGGGCTGCGCGCACAGCCTTGGTG
GGCATGCTGCTATTCAAGGGTCTTGGAGGGCGGTTCAGCGGCGTCGCACC
GAGTAACGTGGCACAACCGGGCGCCTTCTTTAACGTCCGTGGCACCCTCC
CTGCAGGACTGGAGTACGCGAGTCCCAAACAGAAACGGCGGTTGGATATG
TTTGGGTGGGTGTACGGCTGCCATACGTGCGGCAGGCGTCAAATGGGAGA
CTACGTGGGGGACCACATGCCGCCAAGGAAGGTGGCAGTGGAGATGAGCC
GTcgctggtggcggcggctCTTGGGCATTCGAGTCAAGCAGCGCTTCACG
CCCCAGTGTCGCCCATGCTCCAGCATTCAGAGCGCAGCAGTACGCAGCGA
TCGACGCATTCTGGTGTATCActatctctccctccggcggTACCACGCGA
CAGGCGCGGTTTTAGAAGTGGTCTCCCTTCTGCCCGGCCATGGCATGCTG
GATGGACTGATACATCAAAATGTGGGGCGGGTAAGCACCTGGTGGCGACG
TAAGGGGCGTGCGGAGGGAGACTGGCAGTGA

Synonyms

Publications