rna8632, rna8632 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8632
Unique Name	rna8632
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2455
Alignment location	KK037249.1:471297..472467 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100244g5.1336.mrna
Orig protein id	gnl\|cribi\|Naga_100244g5.1336
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:471297..472467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100244g5	gene8367	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8632	rna8632-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22071.1	cds8605	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:471297..472467+
coding sequence from alignment at KK037249.1:471297..472467+

mRNA sequence

>rna8632 ID=rna8632|Name=rna8632|organism=Nannochloropsis gaditana|type=mRNA|length=2455bp
ATGGCAGCAGACGGCGCTGAGGCTGCCACCATCATATTGCGGAGCCTGCC
AGGGCGTGAGCGTACTTCCTTGATACCCTCTCCGACGCGCAAACGCAAAG
GAACTCACTCCTCGACACGAGTGCCGTACACGGGCACCGCTTCTTTCCCC
TCCTCCTCCTCTCCCTCCTCCCCCTCCTCCTCCCCCTCCACGGCTGTGGC
CGCTTCCTTCTCATCCTCATCTTCGCAAGGCAGTGATCAGAGCGTTATAA
GCAGTAGCCGGAGCGCCAGCGGAAGCTGCACCAGCTGCAGCAGTGGCAGT
GGAGGGGAGGAGGAGGAAGAGCACCAGGGCGATGCTTCCTTCCCGCCCCA
TCACGAAACAAGAGCAGGGCCTACGGTGCCAAGGGCGACGCAGCCAAATG
CCTGCATCCCGTCAGGCACATCGCGATCGCGGAAAAGTACGTCGGTGCCG
ATGGAAGCGCCAACGATGGAAGCGCAAGGACTGGCGAGGGTGGAGGTGAA
GGAGGAGCATCGCAACGGTTCCACGGACGGGGAGGCAAGAGATAATGGGG
GTGTTCGCGTCAGATCTGTTCGTCGTAGCCAGACAAGAGGCATGCTAGAA
GGTACGGGGGAGGTGCTAGTCAAGGACGGTAACAACGGGCGGGGCGAGGG
GGGAGGGGACGGAGGCGGGAGGGTTCCGGAAGGGGGGGAAGAGGGCGACG
GTCTCCCGAGCATCCCCGCCCCCGCCAAGGCCCCGCGAGAAGGGGCCATG
TACCAGGTGGAGGAGGGGAAAATCCCACCAGTGCGTCCCTGGGCGAGGCT
GGCGCCTGCTGACGTGGCCGCTGTGGCCAAGGCGGGCTTGGCCTGGAGCC
CCGAGGATGTGGACCCGGGGCAGGCGAGGGCCCTAGCCTCGGCTTTGGCG
GCATTGCGCGACAGGGACGGGCGCTTGGAGGCAGACGATAAGCAGGGTGA
TGGCGTCGGGAAGGGGAAGGCGAAGGCGGAGGAGAGCGGGCTAAGAGGGG
AGGCCATGGAGCTGGGGTGGATGGTGTTGCGGGCGACGGGGAACGTGGTC
AGGGCGGTGGAGACCGCTGTGGACGCGAATAGGCGCATGGCATGGAGCCA
GGAAGAAGAGGCGCTGTTCGTGGAGGGCATGAACGAGTACGACAAAAATT
TTGTCCAGATCAAGGCCCTTCTTCCGAAGCGCAGCGTCCAGGACGTGGTG
GCGCACTTCTACGAGTGGAAGCAGCGGGCGGACTACCGGGCTTGGAAAGC
AGACCGGCCCCTCCAGTACCTGGAGCACGCCATTCCTGACTACCACGCGG
ACGTCTGCGATATGTGCGAGCGGCCGGGCGATTTACTGTGCTGCGATACC
TGCAATCTGGCCTTCCATATGAAGTGTCTGGGCTTCAGGGACGAGGACGT
GCCGGAGGACTTCAGTTGTTCGCAGTGTCAGGCGCAATACCTGACAACCT
CGGAGAGGGAGAGAGCCAAGCGGTGGGTGGAGAGTAAAGTGCGAAAGGTG
CAGACTCTGAGGGAGAAAGAGATGCAGCGGTTGTCGGGCGCCCCAGCCGG
ATACATTGGCCGGCGACGTACAAAGGGTACGCGGGAGGGAGGCAGGGAGG
GAGGAAGGAGGGGAGGACAGAAGAGGGAAGAAAGTAGTTTGAAATCGGGC
ACACATTCGAGAAAGCCTGGTTCTCCCTCACTCCGCGATCTCCGGGGCCT
CTATCTCACACAGCGAGCCAGAGTGAACGGGGCCGGAAGCGCAAGCGTGA
GGACTGTACTACCCAGACTTTCCCGTCAGCCGCCGGCACGAGCCCTAGCG
CTAGCGTCCTCCCCTCCTCCTCGGCAACCGCATTGCCTGCCGCTGCCATC
CCCCTCCTTCCACCCTCCGCATGCTTCCTGTCCTCCTCCCCGCAACCTCC
TCGTTCCCTTTGTTAATCCCTGGGCCCCGGCCCCTCCGGGCTTGGAAAAA
GCGGACGCTTTTGATTGAACCTCCCTTCGACGAGGCGGGCGAAGGTCTAT
TTGGCGAAAGAGCAATGGCATGAAATTTGAATGCTCCTGCTGAATCCAGT
GGATTGCAAACCTTGTCCGTATGCTACCACTGTCACCGAGTAAGGTCATC
ATTCATGTCAATGATCACCTTCTCCTTCGTCTCAATCACCTTTTGTCCAT
CCGCCTGAACAATCAGCTGGAATGGACCGCTGCAGCGGCCACACACTATC
CTTTTCGCAACGATTGAGCATATGTGTACATAAAGTGTATAATCAGATAA
GCTTATGTGGGGGAGAGTGAGTGTACTTGGTAGGCAATGAGCCATCAGGC
GGCGAGACCAGAAGGAAAAGAGCAAGGAAAAATGAGAAGTGCCGAAATGA
GAGATCACGTCGGTGTCTTTACGCAAGCTGCACAATTTTATGAGGTCAAC
GAGGTTTCAATGATGCAAAATTGAAAAAAAAGCAAGTTTTTCGCAAATTT
CATGC

protein sequence of rna8632

>rna8632-protein ID=rna8632-protein|Name=rna8632|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MFSPSFKSRSCSRPYAIVKALPARLSQAMKIIYSMAALLLAAAPARAGLS
LSVRLPEIKCSLATHMHELSFLIVSGASVKRTDVHHLLSVIKPASMLSTV
VCFNLPVTLQVTATDTTVKDLSTLNLEGAVETLLADDVVVGGTYNYNAAV
AKPEEVYIKKAFDVKLGDLALDARYRLPTQVAALTATLRRNADYIRAAFN
TDSVVERVEGSKRFSLPGERQLALTPAWDQSTRAFELTVAQDIQAGKTNA
VLELSQADKDGKLTLNHQVDDANTISPTLSLKRGYLTYQWTHLLGDGAKL
QTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPRTATLSFKRKFTFQ

mRNA from alignment at KK037249.1:471297..472467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8632 ID=rna8632|Name=rna8632|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp|location=Sequence derived from alignment at KK037249.1:471297..472467+ (Nannochloropsis gaditana)
ATGTTTTCCCCGTCTTTCAAGTCCAGGTCGTGTTCTCGTCCTTACGCAAT
TGTCAAAGCTCTTCCGGCTCGTTTATCTCAAGCCATGAAGATCATTTATT
CCATGGCCGCTTTGCTGCTTGCTGCGGCTCCAGCTAGGGCCGGCCTCAGC
CTTTCGGTGAGACTTCCGGAGATCAAATGCTCCCTCGCGGTGAGCTCTGC
TCTTAGGCCGTTatgttttctttcctctcgccTTATGTGCAGGGTGTAGA
CGCATATGCATGAATTGTCCTTCTTGATTGTGTCAGGCGCTTCCGTAAAA
CGAACAGATGTTCATCATCTTCTGTCTGTCATAAAGCCAGCCAGCATGCT
GTCAACAGTAGTGTGTTTCGTTAGTAGAACGTTTAGGAAGGGACGTGCGA
ATTGGTATATCATAagctcccccgcgtcctAAGAATTTACCCGTCACCCT
GCAGGTGACAGCCACGGACACGACCGTGAAAGACCTGTCCACCCTGAATC
TCGAGGGCGCTGTAGAGACCTTATTGGCCGACGACGTTGTGGTGGGCGGC
ACCTACAATTACAATGCTGCGGTGGCTAAGCCTGAGGAGGTATACATCAA
GAAGGCCTTCGACGTGAAGCTGGGCGACCTGGCCCTGGACGCGCGCTACC
GTCTCCCCACCCAAGTGGCGGCCCTGACCGCCACTTTGAGGCGCAACGCC
GACTACATCCGCGCGGCTTTCAACACGGACTCCGTGGTGGAGCGTGTGGA
AGGCTCCAAGAGATTCAGCCTGCCTGGCGAGCGCCAGTTGGCCCTGACCC
CGGCGTGGGACCAAAGCACCAGGGCCTTCGAGCTCACGGTGGCCCAGGAC
ATCCAGGCGGGCAAGACGAACGCGGTCCTCGAGCTTTCTCAGGCTgacaa
ggacgggaagcTCACGCTCAACCACCAGGTGGACGACGCCAACAccatct
cccccaccctcagCCTTAAGCGGGGCTATCTTACCTACCAGTGGACGCAC
CTCCTCGGTGACGGTGCCAAGCTGCAGACCACTCTGGACCCGTTCACGGA
CCTTGATGTCACCTGGTCAGACCccgggaaaggcggggagtgGGTGACAC
GCGCCAACATCCCCCTCAAGGAGCCCAGGACGGCCACGCTTTCCTTCAAG
CGCAAGTTCACATTCCAATAA

Coding sequence (CDS) from alignment at KK037249.1:471297..472467+

>rna8632 ID=rna8632|Name=rna8632|organism=Nannochloropsis gaditana|type=CDS|length=3141bp|location=Sequence derived from alignment at KK037249.1:471297..472467+ (Nannochloropsis gaditana)
ATGTTTTCCCCGTCTTTCAAGTCCAGGTCGTGTTCTCGTCCTTACGCAAT
TGTCAAAGCTCTTCCGGCTCGTTTATCTCAAGCCATGAAGATCATTTATT
CCATGGCCGCTTTGCTGCTTGCTGCGGCTCCAGCTAGGGCCGGCCTCAGC
CTTTCGGTGAGACTTCCGGAGATCAAATGCTCCCTCGCGACGCATATGCA
TGAATTGTCCTTCTTGATTGTGTCAGGCGCTTCCGTAAAACGAACAGATG
TTCATCATCTTCTGTCTGTCATAAAGCCAGCCAGCATGCTGTCAACAGTA
GTGTGTTTCAATTTACCCGTCACCCTGCAGGTGACAGCCACGGACACGAC
CGTGAAAGACCTGTCCACCCTGAATCTCGAGGGCGCTGTAGAGACCTTAT
TGGCCGACGACGTTGTGGTGGGCGGCACCTACAATTACAATGCTGCGGTG
GCTAAGCCTGAGGAGGTATACATCAAGAAGGCCTTCGACGTGAAGCTGGG
CGACCTGGCCCTGGACGCGCGCTACCGTCTCCCCACCCAAGTGGCGGCCC
TGACCGCCACTTTGAGGCGCAACGCCGACTACATCCGCGCGGCTTTCAAC
ACGGACTCCGTGGTGGAGCGTGTGGAAGGCTCCAAGAGATTCAGCCTGCC
TGGCGAGCGCCAGTTGGCCCTGACCCCGGCGTGGGACCAAAGCACCAGGG
CCTTCGAGCTCACGGTGGCCCAGGACATCCAGGCGGGCAAGACGAACGCG
GTCCTCGAGCTTTCTCAGGCTgacaaggacgggaagcTCACGCTCAACCA
CCAGGTGGACGACGCCAACAccatctcccccaccctcagCCTTAAGCGGG
GCTATCTTACCTACCAGTGGACGCACCTCCTCGGTGACGGTGCCAAGCTG
CAGACCACTCTGGACCCGTTCACGGACCTTGATGTCACCTGGTCAGACCc
cgggaaaggcggggagtgGGTGACACGCGCCAACATCCCCCTCAAGGAGC
CCAGGACGGCCACGCTTTCCTTCAAGCGCAAGTTCACATTCCAATAAATG
TTTTCCCCGTCTTTCAAGTCCAGGTCGTGTTCTCGTCCTTACGCAATTGT
CAAAGCTCTTCCGGCTCGTTTATCTCAAGCCATGAAGATCATTTATTCCA
TGGCCGCTTTGCTGCTTGCTGCGGCTCCAGCTAGGGCCGGCCTCAGCCTT
TCGGTGAGACTTCCGGAGATCAAATGCTCCCTCGCGACGCATATGCATGA
ATTGTCCTTCTTGATTGTGTCAGGCGCTTCCGTAAAACGAACAGATGTTC
ATCATCTTCTGTCTGTCATAAAGCCAGCCAGCATGCTGTCAACAGTAGTG
TGTTTCAATTTACCCGTCACCCTGCAGGTGACAGCCACGGACACGACCGT
GAAAGACCTGTCCACCCTGAATCTCGAGGGCGCTGTAGAGACCTTATTGG
CCGACGACGTTGTGGTGGGCGGCACCTACAATTACAATGCTGCGGTGGCT
AAGCCTGAGGAGGTATACATCAAGAAGGCCTTCGACGTGAAGCTGGGCGA
CCTGGCCCTGGACGCGCGCTACCGTCTCCCCACCCAAGTGGCGGCCCTGA
CCGCCACTTTGAGGCGCAACGCCGACTACATCCGCGCGGCTTTCAACACG
GACTCCGTGGTGGAGCGTGTGGAAGGCTCCAAGAGATTCAGCCTGCCTGG
CGAGCGCCAGTTGGCCCTGACCCCGGCGTGGGACCAAAGCACCAGGGCCT
TCGAGCTCACGGTGGCCCAGGACATCCAGGCGGGCAAGACGAACGCGGTC
CTCGAGCTTTCTCAGGCTgacaaggacgggaagcTCACGCTCAACCACCA
GGTGGACGACGCCAACAccatctcccccaccctcagCCTTAAGCGGGGCT
ATCTTACCTACCAGTGGACGCACCTCCTCGGTGACGGTGCCAAGCTGCAG
ACCACTCTGGACCCGTTCACGGACCTTGATGTCACCTGGTCAGACCccgg
gaaaggcggggagtgGGTGACACGCGCCAACATCCCCCTCAAGGAGCCCA
GGACGGCCACGCTTTCCTTCAAGCGCAAGTTCACATTCCAATAAATGTTT
TCCCCGTCTTTCAAGTCCAGGTCGTGTTCTCGTCCTTACGCAATTGTCAA
AGCTCTTCCGGCTCGTTTATCTCAAGCCATGAAGATCATTTATTCCATGG
CCGCTTTGCTGCTTGCTGCGGCTCCAGCTAGGGCCGGCCTCAGCCTTTCG
GTGAGACTTCCGGAGATCAAATGCTCCCTCGCGACGCATATGCATGAATT
GTCCTTCTTGATTGTGTCAGGCGCTTCCGTAAAACGAACAGATGTTCATC
ATCTTCTGTCTGTCATAAAGCCAGCCAGCATGCTGTCAACAGTAGTGTGT
TTCAATTTACCCGTCACCCTGCAGGTGACAGCCACGGACACGACCGTGAA
AGACCTGTCCACCCTGAATCTCGAGGGCGCTGTAGAGACCTTATTGGCCG
ACGACGTTGTGGTGGGCGGCACCTACAATTACAATGCTGCGGTGGCTAAG
CCTGAGGAGGTATACATCAAGAAGGCCTTCGACGTGAAGCTGGGCGACCT
GGCCCTGGACGCGCGCTACCGTCTCCCCACCCAAGTGGCGGCCCTGACCG
CCACTTTGAGGCGCAACGCCGACTACATCCGCGCGGCTTTCAACACGGAC
TCCGTGGTGGAGCGTGTGGAAGGCTCCAAGAGATTCAGCCTGCCTGGCGA
GCGCCAGTTGGCCCTGACCCCGGCGTGGGACCAAAGCACCAGGGCCTTCG
AGCTCACGGTGGCCCAGGACATCCAGGCGGGCAAGACGAACGCGGTCCTC
GAGCTTTCTCAGGCTgacaaggacgggaagcTCACGCTCAACCACCAGGT
GGACGACGCCAACAccatctcccccaccctcagCCTTAAGCGGGGCTATC
TTACCTACCAGTGGACGCACCTCCTCGGTGACGGTGCCAAGCTGCAGACC
ACTCTGGACCCGTTCACGGACCTTGATGTCACCTGGTCAGACCccgggaa
aggcggggagtgGGTGACACGCGCCAACATCCCCCTCAAGGAGCCCAGGA
CGGCCACGCTTTCCTTCAAGCGCAAGTTCACATTCCAATAA

Synonyms

Publications