EWM22074.1, cds8588 (CDS) Nannochloropsis gaditana

Overview
NameEWM22074.1
Unique Namecds8588
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:431918..431971 -
Alignment locationKK037249.1:431620..431705 -
Alignment locationKK037249.1:430948..431455 -
Alignment locationKK037249.1:430537..430743 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22074.1
Productatp-dependent clp proteolytic subunit
Orig transcript idgnl|cribi|Naga_100039g17.4412.mrna
GeneclpP
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:431918..431971 -
KK037249.1supercontigKK037249.1:431620..431705 -
KK037249.1supercontigKK037249.1:430948..431455 -
KK037249.1supercontigKK037249.1:430537..430743 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR018215ClpP_AS
IPR023562ClpP/TepA
IPR029045ClpP/crotonase-like_dom
IPR001907ClpP
Homology
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|585102491|gb|EWM22074.1| (atp-dependent clp proteolytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW 284
            MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW
Sbjct:    1 MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW 284          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|299471219|emb|CBN79074.1| (chloroplast clp protease P [Ectocarpus siliculosus])

HSP 1 Score: 385.185 bits (988), Expect = 3.500e-132
Identity = 200/292 (68.49%), Postives = 227/292 (77.74%), Query Frame = 0
Query:    1 MRTVIPLLATVMLA----VAGEAFIAPTARLPRAPRADARKTLMMS-----SPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKP-ERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            MRT    ++   LA    V G     P  R   +  A AR T  +S     +P  WYP     S  M  +PD  PEVDPRRKD  +P E  PVR+PV++    Q+DV+SRLLKDRILLLGQQV+DEVANVLVAQLLYLA +D +KDITLYINSPGGSVSAG+AIYDAMQ+VPCDV+TVCFG AASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILF+RSLLNSY++EY  QP DKIQ+DCDRDFFMTPEEA+ YG+ID +VTTKTSH+ KP MP+L
Sbjct:    1 MRTAAAFVSLWGLACQQHVCGFVVNNPALRQRSSHGAAARATSALSMKAGPNPKTWYP----HSVSMMPSPDDPPEVDPRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDYGLIDEVVTTKTSHIAKPAMPSL 288          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|1210521045|dbj|GAX20150.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris])

HSP 1 Score: 377.096 bits (967), Expect = 2.140e-129
Identity = 191/278 (68.71%), Postives = 224/278 (80.58%), Query Frame = 0
Query:    7 LLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQ-EPEVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            L AT++L +A  AF A       +P++    +++ S         KW      M PD+ +PEVDPRRKD + KP   PVR+P+I+T+ GQ+DV+SRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED +KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI++Y GQP DKI+ DCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L
Sbjct:    3 LFATLLLPIATSAFSA------YSPQSSIVNSMISS---------KW-----TMMPDEPQPEVDPRRKDPDDKPPTNPVRMPMIDTEKGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPKKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIADYCGQPKDKIEADCDRDFFMTPEEAVDYGIIDEVVKTKTSHITKPPMPVL 260          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|1210528056|dbj|GAX13171.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris])

HSP 1 Score: 374.785 bits (961), Expect = 1.732e-128
Identity = 189/278 (67.99%), Postives = 222/278 (79.86%), Query Frame = 0
Query:    7 LLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQ-EPEVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
               T++L +A  AF A       +P++    +++ S         KW      M PD+ +PEVDPRRKD + KP   PVR+P+I+T+ GQ+DV+SRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED +KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI++Y GQP DKI+ DCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L
Sbjct:    3 FFTTLLLPIAASAFSA------YSPQSSIVNSMISS---------KW-----TMMPDEPQPEVDPRRKDPDDKPPTNPVRMPMIDTEKGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPKKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIADYCGQPKDKIEADCDRDFFMTPEEAVDYGIIDEVVKTKTSHITKPPMPVL 260          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|1072230483|gb|OEU15216.1| (protease subunit of ATP-dependent Clp protease [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 371.318 bits (952), Expect = 8.065e-128
Identity = 177/218 (81.19%), Postives = 198/218 (90.83%), Query Frame = 0
Query:   66 PEVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            PEVDPRRK+ + +P   PVR+PVI+T +GQ+DVLSRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED EKDITLYINSPGGSVSAG+AIYD MQ++PCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY  QP DKI+EDCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L
Sbjct:    6 PEVDPRRKNPDEQPPSAPVRMPVIDTDSGQMDVLSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYIPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEEDCDRDFFMTPEEAVEYGIIDEVVKTKTSHITKPDMPTL 223          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|397618063|gb|EJK64740.1| (hypothetical protein THAOC_14495 [Thalassiosira oceanica])

HSP 1 Score: 356.295 bits (913), Expect = 8.200e-121
Identity = 168/217 (77.42%), Postives = 193/217 (88.94%), Query Frame = 0
Query:   67 EVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            EVDPRRK+ + +P R PVR+PV+++   Q DV+SRLL+DRI+LLGQ VDDE+ANVLVAQLLYLA ED  KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGA GKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY GQP DKI+ DCDRDFFMT EEAV YG+ID ++TTKTSH+ KP MP L
Sbjct:   71 EVDPRRKNPDEQPSRGPVRMPVVDSDGSQKDVISRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCGQPKDKIEADCDRDFFMTAEEAVDYGIIDEMITTKTSHITKPPMPIL 287          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|676394013|ref|XP_009040284.1| (hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens] >gi|323449038|gb|EGB04929.1| hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens])

HSP 1 Score: 349.362 bits (895), Expect = 2.999e-118
Identity = 192/277 (69.31%), Postives = 225/277 (81.23%), Query Frame = 0
Query:   11 VMLAVAG--EAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRM-APDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW 284
            ++LA AG   AF+ P  RL     A +  +L+ SSP +   G+K  +    M +PD  PEVDPRR+D  KP   PVR+P+++T  GQ+DV+SRLL+DRILLLG+ VDDEVANVLVAQLLYLA +D  KDITLYINSPGGSVSAG+AIYD MQFVPCDV+TVCFG AASMGAFLLGAGAKGKRRSLPN+RIMIHQPLGGAQGQAADIEIQAKEILFVR  LN++ISEYTGQP+DKI+EDCDRDFFM PEEA++YG+ID +V TKTSH+  P MP L +
Sbjct:    4 LLLAYAGVVTAFVQP--RL----IALSASSLIKSSP-IARSGIKLSAAPTMMPSPDDPPEVDPRRRDPEKPSIPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPMDKIEEDCDRDFFMCPEEALSYGLIDEVVKTKTSHIAMPPMPELAF 273          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|219129357|ref|XP_002184857.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 335.109 bits (858), Expect = 6.368e-114
Identity = 158/188 (84.04%), Postives = 173/188 (92.02%), Query Frame = 0
Query:   95 IDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            +DV+SRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED EKDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY  QP DKI+ DCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L
Sbjct:    1 MDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTPEEAVEYGIIDEVVKTKTSHIVKPEMPIL 188          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|223994545|ref|XP_002286956.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 335.88 bits (860), Expect = 3.206e-113
Identity = 161/208 (77.40%), Postives = 181/208 (87.02%), Query Frame = 0
Query:   75 EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            +P+P   P  LP +E  +GQ+DV+SRLLKDRILLLG  V+DEVANVLVAQLLYLA ED EKDITLYINSPGGSVSAGLAIYD MQF+PCDV TVCFGMAASMGAFLLGAGA GKR+SLPNARIMIHQPLGGAQGQAADIEIQAKEILFV++ LN YI+EY  QP++KI+ED DRDFFMTP EA  YG+ID ++ TKTSH+P P MP+L
Sbjct:   54 QPRP---PPTLPTVEGGSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKACLNKYIAEYCDQPVEKIEEDTDRDFFMTPYEAQDYGIIDEVIKTKTSHIPLPAMPSL 258          
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|224013265|ref|XP_002295284.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 331.257 bits (848), Expect = 2.605e-112
Identity = 157/198 (79.29%), Postives = 176/198 (88.89%), Query Frame = 0
Query:   85 LPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282
            +PV++  T Q DVLSRLL+DRI+LLGQ VDDE+ANVLVAQLLYLA ED  KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGA GKRR+LPNARIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY  QP DKI+ DCDRDFFMT EEAV YG+ID ++ TKTSH+ KP MP L
Sbjct:    1 MPVVDDGTSQKDVLSRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTAEEAVDYGIIDEMIVTKTSHITKPPMPIL 198          
The following BLAST results are available for this feature:
BLAST of EWM22074.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102491|gb|EWM22074.1|0.000e+0100.00atp-dependent clp proteolytic subunit [Nannochloro... [more]
gi|299471219|emb|CBN79074.1|3.500e-13268.49chloroplast clp protease P [Ectocarpus siliculosus... [more]
gi|1210521045|dbj|GAX20150.1|2.140e-12968.71ATP-dependent Clp protease, protease subunit [Fist... [more]
gi|1210528056|dbj|GAX13171.1|1.732e-12867.99ATP-dependent Clp protease, protease subunit [Fist... [more]
gi|1072230483|gb|OEU15216.1|8.065e-12881.19protease subunit of ATP-dependent Clp protease [Fr... [more]
gi|397618063|gb|EJK64740.1|8.200e-12177.42hypothetical protein THAOC_14495 [Thalassiosira oc... [more]
gi|676394013|ref|XP_009040284.1|2.999e-11869.31hypothetical protein AURANDRAFT_38757 [Aureococcus... [more]
gi|219129357|ref|XP_002184857.1|6.368e-11484.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223994545|ref|XP_002286956.1|3.206e-11377.40predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|224013265|ref|XP_002295284.1|2.605e-11279.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8615rna8615Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications