rna8615, rna8615 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8615
Unique Name	rna8615
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1179
Alignment location	KK037249.1:430537..431971 -

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent clp proteolytic subunit
Orig transcript id	gnl\|cribi\|Naga_100039g17.4412.mrna
Orig protein id	gnl\|cribi\|Naga_100039g17.4412
Gene	clpP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:430537..431971 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
clpP	gene8350	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8615	rna8615-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22074.1	cds8588	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:430537..431971-
coding sequence from alignment at KK037249.1:430537..431971-

mRNA sequence

>rna8615 ID=rna8615|Name=rna8615|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp
ATGCGGGGAGAACGCGAGGGAGGGTGGCAGGAAAATGAAGGGTGTGTGCG
GTACCCAGCACGGAATTGTCGAGTGATCAGGCGAAAGAAGCATGCTAGGA
GAAGATGGAATGGGCCAAGGCAGTCGCAAAAGAAAAATGAAACAAGAAAC
GGGCTCCAGAACGGGACGAGAATTGTTGCACGAAGGGTAAAATACGAAGA
GGTCGGCGCTTCAAGACTGCGTTCATGTAGGTCTCAATCGTCGTTTGCCT
TTCTGCTGTCACTTGCGGATCCAGGTTGCTCCCAAACGACAACCAGGGTC
TTTTTGGTGCCAATTTGGCCAAAAGTGGTTCGTATCCCTCGTAGAAACTC
AGCGTCGAGTCAAATTCACAGATCTCCGAAAATCGTTTGTTCACATCCCT
TGAGCGGCCATTCTGATCAAGCCGAAGGCGGTACAGCACGTACTCGGCCC
CGTCACTATCCTGCACTAGCAGGAGCCTCGTTTGAGCTGGAGACGTTGTC
TACATTCCTAAGGAGATCCTTCGCCGAAGCTGTATTCACCCCCACCAGAG
GCCATGCGGCCTCTGTTCTATCGCAAGCATCGCTGACTCCGCGTCGCCGA
GCCCGTCGGCCGCCTCCCCGCCTTGCCTGCCAATTTTGGCGACACACAGT
AGTCGCTGTGCTGTTTCTTGACTCCACACGCGGTGAGGACAAAGGCAGGG
GGCAGGTCGCGGAAAAGGTCGCGCTGGGTGCGATATTTGCAGACTGCAAA
GATCCAGGAGACACAAAAGATGTTTTGAAATATAATGATAGGAATTCTTC
CCCATTGCTGCTGCTCGGTTTCGTATCGACTTCGATAGGCACGGCATCAG
CAGAACCGACTCGGCAAGTGCCCCCAGCGATAGGACGAGTTTGCGGGAAC
CTCTTGCTGCTCCGTTTGAGTGATTTAGACGGCTCACTGAAGTTTTTCTG
GGCAGAGGACGCAGACAACGACGAGGGCGATGACGTGCCAGAGGAAGAGG
ATGAGGGTGACACCGACGTATTTACATGTTGCGTATTGGAATCCTTCAAT
CTTGGACGGCCTACACGGCATTTAGCTGCTGTCACAAGCTCCCATTCTTG
TCGTTCGCTTTTACTGAGGCCTTTGATCCAAAGAGCTTTCCGTCTCGTGA
TTGTCGTCCCTGGGAGTGTTCTGAGGTAA

protein sequence of rna8615

>rna8615-protein ID=rna8615-protein|Name=rna8615|organism=Nannochloropsis gaditana|type=polypeptide|length=284bp
MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPG
MKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSR
LLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSA
GLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIH
QPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDF
FMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW

mRNA from alignment at KK037249.1:430537..431971-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8615 ID=rna8615|Name=rna8615|organism=Nannochloropsis gaditana|type=mRNA|length=1435bp|location=Sequence derived from alignment at KK037249.1:430537..431971- (Nannochloropsis gaditana)
ATGCGTACAGTTATACCGTTGTTGGCAACCGTGATGCTAGCGGTCGCTGG
AGAGGTGAGTCTACTGTTATCCTTATGGAGGGGGAAGAAGGATACTTTTG
CACTAAGAGGCAGGCCGCGCCCCGAGACATCAATGCGTGTGCTTTGCGGC
CTACGATCGGCAAGCATATTGTAGAAAATATCTGTCGAGTCTTAGCTCTG
TCTAAGTTTCTCGCATGCCAATCCCTTCGGTCATTGATTCGGAACCCACG
TTACCCCCTCATATAGGCCTTCATCGCCCCCACTGCCCGGCTTCCTCGCG
CGCCACGAGCTGATGCCCGAAAGACTCTTATGATGTCTTCACCAAATCTC
TGGTAGGCATTTCGTGCTCGCTTATTGTGGAATGTTTTCAAGCTTGGATG
TGCGGTGAAGGAGTGGATAAATTCTTGCGTGCCTGACGATGGACCCTACT
ATTCATCCCCTCAAACCTATCTGCTTAAATTTCCTCCCGCTTTGGTCCCC
TCCTTGTCGCACACAGGTACCCCGGTATGAAATGGGATTCTCGTGGTATG
CGTATGGCCCCAGATCAGGAACCGGAGGTGGACCCGCGACGGAAAGACGA
GCCGAAGCCGGAGCGCTTCCCCGTCCGCCTGCCCGTCATCGAGACGCAGA
CGGGGCAGATCGACGTGCTCTCCCGGCTTTTGAAGGATCGGATTCTGCTC
CTGGGCCAGCAAGTGGACGACGAGGTGGCTAACGTATTGGTAGCGCAGCT
CTTGTACCTGGCGCAAGAGGATAAGGAGAAGGATATTACCCTCTACATAA
ACTCCCCAGGTGGCTCGGTGTCTGCCGGTTTGGCCATCTATGATGCCATG
CAATTCGTCCCATGCGATGTAGCCACGGTCTGCTTTGGAATGGCCGCGTC
TATGGGGGCTTTTTTATTGGGCGCAGGGGCCAAGGGGAAGCGGCGGTCGT
TGCCCAACGCCCGCATCATGATCCATCAACCCCTGGGGGGGGCCCAGGGG
CAAGCCGCCGACATTGAGATCCAGGTGAGGGGAAATGGTGGAATAAGGCG
GTGGAGAAAAGCTGAGAACAGTGGAGGGGACTAGGGGGGTACCCATACTT
AAGCCTTGTTTCGAGACAGCCCCCGTCGCCTGGGGCTTTCGTCCTCTCTC
TGTGGCGCGGCCTCTGGCGATGGCACTACCGCATTGCTTCCGACCTCCAT
CTGACCTTCTGCCCGCGCACCTGCACAGGCCAAAGAGATCCTCTTTGTTC
GCTCCTTGCTCAACAGCTACATCAGCGAATACACGGGCCAGCCCATCGAT
AAGATCCAGGAGGACTGCGATCGGGACTTCTTCATGACCCCCGAGGAGGC
CGTGGCCTACGGGATGATCGACTCCATTGTCACGACCAAGACGAGCCACG
TGCCCAAGCCTACCATGCCGGCCCTCTTCTGGTAG

Coding sequence (CDS) from alignment at KK037249.1:430537..431971-

>rna8615 ID=rna8615|Name=rna8615|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at KK037249.1:430537..431971- (Nannochloropsis gaditana)
GCCAAAGAGATCCTCTTTGTTCGCTCCTTGCTCAACAGCTACATCAGCGA
ATACACGGGCCAGCCCATCGATAAGATCCAGGAGGACTGCGATCGGGACT
TCTTCATGACCCCCGAGGAGGCCGTGGCCTACGGGATGATCGACTCCATT
GTCACGACCAAGACGAGCCACGTGCCCAAGCCTACCATGCCGGCCCTCTT
CTGGTAGGTACCCCGGTATGAAATGGGATTCTCGTGGTATGCGTATGGCC
CCAGATCAGGAACCGGAGGTGGACCCGCGACGGAAAGACGAGCCGAAGCC
GGAGCGCTTCCCCGTCCGCCTGCCCGTCATCGAGACGCAGACGGGGCAGA
TCGACGTGCTCTCCCGGCTTTTGAAGGATCGGATTCTGCTCCTGGGCCAG
CAAGTGGACGACGAGGTGGCTAACGTATTGGTAGCGCAGCTCTTGTACCT
GGCGCAAGAGGATAAGGAGAAGGATATTACCCTCTACATAAACTCCCCAG
GTGGCTCGGTGTCTGCCGGTTTGGCCATCTATGATGCCATGCAATTCGTC
CCATGCGATGTAGCCACGGTCTGCTTTGGAATGGCCGCGTCTATGGGGGC
TTTTTTATTGGGCGCAGGGGCCAAGGGGAAGCGGCGGTCGTTGCCCAACG
CCCGCATCATGATCCATCAACCCCTGGGGGGGGCCCAGGGGCAAGCCGCC
GACATTGAGATCCAGGCCTTCATCGCCCCCACTGCCCGGCTTCCTCGCGC
GCCACGAGCTGATGCCCGAAAGACTCTTATGATGTCTTCACCAAATCTCT
GATGCGTACAGTTATACCGTTGTTGGCAACCGTGATGCTAGCGGTCGCTG
GAGAGGCCAAAGAGATCCTCTTTGTTCGCTCCTTGCTCAACAGCTACATC
AGCGAATACACGGGCCAGCCCATCGATAAGATCCAGGAGGACTGCGATCG
GGACTTCTTCATGACCCCCGAGGAGGCCGTGGCCTACGGGATGATCGACT
CCATTGTCACGACCAAGACGAGCCACGTGCCCAAGCCTACCATGCCGGCC
CTCTTCTGGTAGGTACCCCGGTATGAAATGGGATTCTCGTGGTATGCGTA
TGGCCCCAGATCAGGAACCGGAGGTGGACCCGCGACGGAAAGACGAGCCG
AAGCCGGAGCGCTTCCCCGTCCGCCTGCCCGTCATCGAGACGCAGACGGG
GCAGATCGACGTGCTCTCCCGGCTTTTGAAGGATCGGATTCTGCTCCTGG
GCCAGCAAGTGGACGACGAGGTGGCTAACGTATTGGTAGCGCAGCTCTTG
TACCTGGCGCAAGAGGATAAGGAGAAGGATATTACCCTCTACATAAACTC
CCCAGGTGGCTCGGTGTCTGCCGGTTTGGCCATCTATGATGCCATGCAAT
TCGTCCCATGCGATGTAGCCACGGTCTGCTTTGGAATGGCCGCGTCTATG
GGGGCTTTTTTATTGGGCGCAGGGGCCAAGGGGAAGCGGCGGTCGTTGCC
CAACGCCCGCATCATGATCCATCAACCCCTGGGGGGGGCCCAGGGGCAAG
CCGCCGACATTGAGATCCAGGCCTTCATCGCCCCCACTGCCCGGCTTCCT
CGCGCGCCACGAGCTGATGCCCGAAAGACTCTTATGATGTCTTCACCAAA
TCTCTGATGCGTACAGTTATACCGTTGTTGGCAACCGTGATGCTAGCGGT
CGCTGGAGAGGCCAAAGAGATCCTCTTTGTTCGCTCCTTGCTCAACAGCT
ACATCAGCGAATACACGGGCCAGCCCATCGATAAGATCCAGGAGGACTGC
GATCGGGACTTCTTCATGACCCCCGAGGAGGCCGTGGCCTACGGGATGAT
CGACTCCATTGTCACGACCAAGACGAGCCACGTGCCCAAGCCTACCATGC
CGGCCCTCTTCTGGTAGGTACCCCGGTATGAAATGGGATTCTCGTGGTAT
GCGTATGGCCCCAGATCAGGAACCGGAGGTGGACCCGCGACGGAAAGACG
AGCCGAAGCCGGAGCGCTTCCCCGTCCGCCTGCCCGTCATCGAGACGCAG
ACGGGGCAGATCGACGTGCTCTCCCGGCTTTTGAAGGATCGGATTCTGCT
CCTGGGCCAGCAAGTGGACGACGAGGTGGCTAACGTATTGGTAGCGCAGC
TCTTGTACCTGGCGCAAGAGGATAAGGAGAAGGATATTACCCTCTACATA
AACTCCCCAGGTGGCTCGGTGTCTGCCGGTTTGGCCATCTATGATGCCAT
GCAATTCGTCCCATGCGATGTAGCCACGGTCTGCTTTGGAATGGCCGCGT
CTATGGGGGCTTTTTTATTGGGCGCAGGGGCCAAGGGGAAGCGGCGGTCG
TTGCCCAACGCCCGCATCATGATCCATCAACCCCTGGGGGGGGCCCAGGG
GCAAGCCGCCGACATTGAGATCCAGGCCTTCATCGCCCCCACTGCCCGGC
TTCCTCGCGCGCCACGAGCTGATGCCCGAAAGACTCTTATGATGTCTTCA
CCAAATCTCTGATGCGTACAGTTATACCGTTGTTGGCAACCGTGATGCTA
GCGGTCGCTGGAGAGGCCAAAGAGATCCTCTTTGTTCGCTCCTTGCTCAA
CAGCTACATCAGCGAATACACGGGCCAGCCCATCGATAAGATCCAGGAGG
ACTGCGATCGGGACTTCTTCATGACCCCCGAGGAGGCCGTGGCCTACGGG
ATGATCGACTCCATTGTCACGACCAAGACGAGCCACGTGCCCAAGCCTAC
CATGCCGGCCCTCTTCTGGTAGGTACCCCGGTATGAAATGGGATTCTCGT
GGTATGCGTATGGCCCCAGATCAGGAACCGGAGGTGGACCCGCGACGGAA
AGACGAGCCGAAGCCGGAGCGCTTCCCCGTCCGCCTGCCCGTCATCGAGA
CGCAGACGGGGCAGATCGACGTGCTCTCCCGGCTTTTGAAGGATCGGATT
CTGCTCCTGGGCCAGCAAGTGGACGACGAGGTGGCTAACGTATTGGTAGC
GCAGCTCTTGTACCTGGCGCAAGAGGATAAGGAGAAGGATATTACCCTCT
ACATAAACTCCCCAGGTGGCTCGGTGTCTGCCGGTTTGGCCATCTATGAT
GCCATGCAATTCGTCCCATGCGATGTAGCCACGGTCTGCTTTGGAATGGC
CGCGTCTATGGGGGCTTTTTTATTGGGCGCAGGGGCCAAGGGGAAGCGGC
GGTCGTTGCCCAACGCCCGCATCATGATCCATCAACCCCTGGGGGGGGCC
CAGGGGCAAGCCGCCGACATTGAGATCCAGGCCTTCATCGCCCCCACTGC
CCGGCTTCCTCGCGCGCCACGAGCTGATGCCCGAAAGACTCTTATGATGT
CTTCACCAAATCTCTGATGCGTACAGTTATACCGTTGTTGGCAACCGTGA
TGCTAGCGGTCGCTGGAGAG

Synonyms

Publications