EWM22074.1, cds8588 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|585102491|gb|EWM22074.1| (atp-dependent clp proteolytic subunit [Nannochloropsis gaditana]) HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0 Query: 1 MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW 284 MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW Sbjct: 1 MRTVIPLLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW 284
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|299471219|emb|CBN79074.1| (chloroplast clp protease P [Ectocarpus siliculosus]) HSP 1 Score: 385.185 bits (988), Expect = 3.500e-132 Identity = 200/292 (68.49%), Postives = 227/292 (77.74%), Query Frame = 0 Query: 1 MRTVIPLLATVMLA----VAGEAFIAPTARLPRAPRADARKTLMMS-----SPNLWYPGMKWDSRGMRMAPDQEPEVDPRRKDEPKP-ERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 MRT ++ LA V G P R + A AR T +S +P WYP S M +PD PEVDPRRKD +P E PVR+PV++ Q+DV+SRLLKDRILLLGQQV+DEVANVLVAQLLYLA +D +KDITLYINSPGGSVSAG+AIYDAMQ+VPCDV+TVCFG AASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILF+RSLLNSY++EY QP DKIQ+DCDRDFFMTPEEA+ YG+ID +VTTKTSH+ KP MP+L Sbjct: 1 MRTAAAFVSLWGLACQQHVCGFVVNNPALRQRSSHGAAARATSALSMKAGPNPKTWYP----HSVSMMPSPDDPPEVDPRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDYGLIDEVVTTKTSHIAKPAMPSL 288
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|1210521045|dbj|GAX20150.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris]) HSP 1 Score: 377.096 bits (967), Expect = 2.140e-129 Identity = 191/278 (68.71%), Postives = 224/278 (80.58%), Query Frame = 0 Query: 7 LLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQ-EPEVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 L AT++L +A AF A +P++ +++ S KW M PD+ +PEVDPRRKD + KP PVR+P+I+T+ GQ+DV+SRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED +KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI++Y GQP DKI+ DCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L Sbjct: 3 LFATLLLPIATSAFSA------YSPQSSIVNSMISS---------KW-----TMMPDEPQPEVDPRRKDPDDKPPTNPVRMPMIDTEKGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPKKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIADYCGQPKDKIEADCDRDFFMTPEEAVDYGIIDEVVKTKTSHITKPPMPVL 260
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|1210528056|dbj|GAX13171.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris]) HSP 1 Score: 374.785 bits (961), Expect = 1.732e-128 Identity = 189/278 (67.99%), Postives = 222/278 (79.86%), Query Frame = 0 Query: 7 LLATVMLAVAGEAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRMAPDQ-EPEVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 T++L +A AF A +P++ +++ S KW M PD+ +PEVDPRRKD + KP PVR+P+I+T+ GQ+DV+SRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED +KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI++Y GQP DKI+ DCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L Sbjct: 3 FFTTLLLPIAASAFSA------YSPQSSIVNSMISS---------KW-----TMMPDEPQPEVDPRRKDPDDKPPTNPVRMPMIDTEKGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPKKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIADYCGQPKDKIEADCDRDFFMTPEEAVDYGIIDEVVKTKTSHITKPPMPVL 260
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|1072230483|gb|OEU15216.1| (protease subunit of ATP-dependent Clp protease [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 371.318 bits (952), Expect = 8.065e-128 Identity = 177/218 (81.19%), Postives = 198/218 (90.83%), Query Frame = 0 Query: 66 PEVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 PEVDPRRK+ + +P PVR+PVI+T +GQ+DVLSRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED EKDITLYINSPGGSVSAG+AIYD MQ++PCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY QP DKI+EDCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L Sbjct: 6 PEVDPRRKNPDEQPPSAPVRMPVIDTDSGQMDVLSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYIPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEEDCDRDFFMTPEEAVEYGIIDEVVKTKTSHITKPDMPTL 223
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|397618063|gb|EJK64740.1| (hypothetical protein THAOC_14495 [Thalassiosira oceanica]) HSP 1 Score: 356.295 bits (913), Expect = 8.200e-121 Identity = 168/217 (77.42%), Postives = 193/217 (88.94%), Query Frame = 0 Query: 67 EVDPRRKD-EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 EVDPRRK+ + +P R PVR+PV+++ Q DV+SRLL+DRI+LLGQ VDDE+ANVLVAQLLYLA ED KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGA GKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY GQP DKI+ DCDRDFFMT EEAV YG+ID ++TTKTSH+ KP MP L Sbjct: 71 EVDPRRKNPDEQPSRGPVRMPVVDSDGSQKDVISRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCGQPKDKIEADCDRDFFMTAEEAVDYGIIDEMITTKTSHITKPPMPIL 287
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|676394013|ref|XP_009040284.1| (hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens] >gi|323449038|gb|EGB04929.1| hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens]) HSP 1 Score: 349.362 bits (895), Expect = 2.999e-118 Identity = 192/277 (69.31%), Postives = 225/277 (81.23%), Query Frame = 0 Query: 11 VMLAVAG--EAFIAPTARLPRAPRADARKTLMMSSPNLWYPGMKWDSRGMRM-APDQEPEVDPRRKDEPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPALFW 284 ++LA AG AF+ P RL A + +L+ SSP + G+K + M +PD PEVDPRR+D KP PVR+P+++T GQ+DV+SRLL+DRILLLG+ VDDEVANVLVAQLLYLA +D KDITLYINSPGGSVSAG+AIYD MQFVPCDV+TVCFG AASMGAFLLGAGAKGKRRSLPN+RIMIHQPLGGAQGQAADIEIQAKEILFVR LN++ISEYTGQP+DKI+EDCDRDFFM PEEA++YG+ID +V TKTSH+ P MP L + Sbjct: 4 LLLAYAGVVTAFVQP--RL----IALSASSLIKSSP-IARSGIKLSAAPTMMPSPDDPPEVDPRRRDPEKPSIPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPMDKIEEDCDRDFFMCPEEALSYGLIDEVVKTKTSHIAMPPMPELAF 273
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|219129357|ref|XP_002184857.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 335.109 bits (858), Expect = 6.368e-114 Identity = 158/188 (84.04%), Postives = 173/188 (92.02%), Query Frame = 0 Query: 95 IDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 +DV+SRLLKDRILLLGQ VDDEVANVLVAQLLYLA ED EKDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY QP DKI+ DCDRDFFMTPEEAV YG+ID +V TKTSH+ KP MP L Sbjct: 1 MDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTPEEAVEYGIIDEVVKTKTSHIVKPEMPIL 188
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|223994545|ref|XP_002286956.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 335.88 bits (860), Expect = 3.206e-113 Identity = 161/208 (77.40%), Postives = 181/208 (87.02%), Query Frame = 0 Query: 75 EPKPERFPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 +P+P P LP +E +GQ+DV+SRLLKDRILLLG V+DEVANVLVAQLLYLA ED EKDITLYINSPGGSVSAGLAIYD MQF+PCDV TVCFGMAASMGAFLLGAGA GKR+SLPNARIMIHQPLGGAQGQAADIEIQAKEILFV++ LN YI+EY QP++KI+ED DRDFFMTP EA YG+ID ++ TKTSH+P P MP+L Sbjct: 54 QPRP---PPTLPTVEGGSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKACLNKYIAEYCDQPVEKIEEDTDRDFFMTPYEAQDYGIIDEVIKTKTSHIPLPAMPSL 258
BLAST of EWM22074.1 vs. NCBI_GenBank
Match: gi|224013265|ref|XP_002295284.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 331.257 bits (848), Expect = 2.605e-112 Identity = 157/198 (79.29%), Postives = 176/198 (88.89%), Query Frame = 0 Query: 85 LPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANVLVAQLLYLAQEDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHVPKPTMPAL 282 +PV++ T Q DVLSRLL+DRI+LLGQ VDDE+ANVLVAQLLYLA ED KDITLYINSPGGSVSAG+AIYD MQ+VPCDV+TVCFGMAASMGAFLLGAGA GKRR+LPNARIMIHQPLGGAQGQAADIEIQAKEILF+R +LN+YI+EY QP DKI+ DCDRDFFMT EEAV YG+ID ++ TKTSH+ KP MP L Sbjct: 1 MPVVDDGTSQKDVLSRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTAEEAVDYGIIDEMIVTKTSHITKPPMPIL 198 The following BLAST results are available for this feature:
BLAST of EWM22074.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|