EWM22080.1, cds8583 (CDS) Nannochloropsis gaditana

Overview
NameEWM22080.1
Unique Namecds8583
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:419758..419777 -
Alignment locationKK037249.1:419447..419612 -
Alignment locationKK037249.1:419151..419225 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22080.1
Productanaphase-promoting complex subunit 11
Orig transcript idgnl|cribi|Naga_100039g22.4418.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:419758..419777 -
KK037249.1supercontigKK037249.1:419447..419612 -
KK037249.1supercontigKK037249.1:419151..419225 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005680anaphase-promoting complex
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR024991Apc11
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|585102497|gb|EWM22080.1| (anaphase-promoting complex subunit 11 [Nannochloropsis gaditana])

HSP 1 Score: 181.415 bits (459), Expect = 3.939e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFRA 86
            MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFRA
Sbjct:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFRA 86          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|695396192|ref|XP_009521384.1| (hypothetical protein PHYSODRAFT_345071 [Phytophthora sojae] >gi|348686281|gb|EGZ26096.1| hypothetical protein PHYSODRAFT_345071 [Phytophthora sojae])

HSP 1 Score: 130.183 bits (326), Expect = 1.236e-37
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV IKRWH VATW W V++E CGIC  AFEACCPDC +PGD CPPVWG CNHAFHMHC+MKWL S Q+  +Q CP CRQ W+FR
Sbjct:    9 MKVTIKRWHGVATWTWGVDEECCGICRYAFEACCPDCAMPGDGCPPVWGACNHAFHMHCLMKWLESLQSM-RQHCPMCRQDWKFR 92          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|1214696943|gb|OWZ10335.1| (Anaphase-promoting complex subunit 11 [Phytophthora megakarya])

HSP 1 Score: 129.413 bits (324), Expect = 1.691e-37
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV IK+WH VATW+W V++E CGIC  AFEACCPDC +PGD CPPVWG CNHAFHMHC+MKWL S Q+  +Q CP CRQ W+FR
Sbjct:    1 MKVTIKKWHGVATWKWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACNHAFHMHCLMKWLESLQSM-RQHCPMCRQDWKFR 84          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|567950514|gb|ETK76225.1| (hypothetical protein L915_17343 [Phytophthora parasitica] >gi|567979181|gb|ETL29663.1| hypothetical protein L916_17236 [Phytophthora parasitica] >gi|570940551|gb|ETP05808.1| hypothetical protein F441_17691 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 129.798 bits (325), Expect = 2.278e-37
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV IKRWH VATW+W V++E CGIC  AFEACCP+C +PGD CPPVWG CNHAFHMHC++KWL S Q+  +Q CP CRQ W+FR
Sbjct:   17 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPECTMPGDGCPPVWGACNHAFHMHCLVKWLESLQSM-RQHCPMCRQDWKFR 100          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|570970799|gb|ETP33918.1| (hypothetical protein F442_17671 [Phytophthora parasitica P10297])

HSP 1 Score: 129.413 bits (324), Expect = 2.627e-37
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV IKRWH VATW+W V++E CGIC  AFEACCP+C +PGD CPPVWG CNHAFHMHC++KWL S Q+  +Q CP CRQ W+FR
Sbjct:   17 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPECTMPGDGCPPVWGACNHAFHMHCLVKWLESLQSM-RQHCPMCRQDWKFR 100          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|675174881|ref|XP_008896325.1| (hypothetical protein PPTG_04211 [Phytophthora parasitica INRA-310] >gi|566013079|gb|ETI35990.1| hypothetical protein F443_17814 [Phytophthora parasitica P1569] >gi|568008668|gb|ETL82885.1| hypothetical protein L917_17069 [Phytophthora parasitica] >gi|568038592|gb|ETM36118.1| hypothetical protein L914_17139 [Phytophthora parasitica] >gi|568104031|gb|ETN18688.1| hypothetical protein PPTG_04211 [Phytophthora parasitica INRA-310] >gi|570316761|gb|ETO64709.1| hypothetical protein F444_17851 [Phytophthora parasitica P1976])

HSP 1 Score: 127.872 bits (320), Expect = 7.357e-37
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV IKRWH VATW+W V++E CGIC  AFEACCP+C +PGD CPPVWG CNHAFHMHC++KWL S Q+  +Q CP CRQ W+FR
Sbjct:    1 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPECTMPGDGCPPVWGACNHAFHMHCLVKWLESLQSM-RQHCPMCRQDWKFR 84          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|1191053786|ref|XP_020904846.1| (anaphase-promoting complex subunit 11-like [Exaiptasia pallida])

HSP 1 Score: 126.716 bits (317), Expect = 1.983e-36
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKVKIKRW  VATW+W  ND+ CGIC  AF+ CCPDC IPGDDCP VWG C+H FHMHCI+KWLNSQ   ++Q CP CRQ+W+F+
Sbjct:    1 MKVKIKRWIGVATWRWVANDDSCGICRMAFDGCCPDCKIPGDDCPLVWGKCSHVFHMHCILKWLNSQ--LHQQLCPMCRQEWQFK 83          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|1160119598|ref|XP_020386128.1| (anaphase-promoting complex subunit 11 [Rhincodon typus])

HSP 1 Score: 126.716 bits (317), Expect = 2.338e-36
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            M+VK+KRW+A+ATW W  NDE CGIC TAF  CCPDC +PGDDCP VWG C+H FHMHCI+KWLNSQQ   +Q CP CRQ+W+F+
Sbjct:    1 MRVKVKRWNAIATWFWVANDENCGICRTAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQQ--VQQHCPMCRQEWKFK 83          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|1173926822|gb|OQR80959.1| (anaphase-promoting complex subunit 11-like [Achlya hypogyna])

HSP 1 Score: 126.716 bits (317), Expect = 2.380e-36
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV+IKR H VATW W V++E CGIC  AFEACCPDC  PGD CPPVWG CNHAFHMHC++KWL S Q + +Q CP CRQ+W+FR
Sbjct:    1 MKVRIKRIHGVATWSWGVDEECCGICRYAFEACCPDCSAPGDGCPPVWGNCNHAFHMHCLVKWLESLQ-STRQHCPMCRQEWKFR 84          
BLAST of EWM22080.1 vs. NCBI_GenBank
Match: gi|813114441|ref|XP_012195377.1| (anaphase-promoting complex subunit 11 [Saprolegnia parasitica CBS 223.65] >gi|641539892|gb|KDO33687.1| anaphase-promoting complex subunit 11 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 126.331 bits (316), Expect = 2.765e-36
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 0
Query:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFR 85
            MKV IKR H VATW W V++E CGIC  AFEACCPDC  PGD CPPVWG CNHAFHMHC++KWL S Q+A +Q CP CRQ+W+FR
Sbjct:    1 MKVTIKRIHGVATWSWGVDEECCGICRCAFEACCPDCSAPGDACPPVWGNCNHAFHMHCLVKWLESLQSA-RQHCPMCRQEWKFR 84          
The following BLAST results are available for this feature:
BLAST of EWM22080.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102497|gb|EWM22080.1|3.939e-58100.00anaphase-promoting complex subunit 11 [Nannochloro... [more]
gi|695396192|ref|XP_009521384.1|1.236e-3771.76hypothetical protein PHYSODRAFT_345071 [Phytophtho... [more]
gi|1214696943|gb|OWZ10335.1|1.691e-3770.59Anaphase-promoting complex subunit 11 [Phytophthor... [more]
gi|567950514|gb|ETK76225.1|2.278e-3769.41hypothetical protein L915_17343 [Phytophthora para... [more]
gi|570970799|gb|ETP33918.1|2.627e-3769.41hypothetical protein F442_17671 [Phytophthora para... [more]
gi|675174881|ref|XP_008896325.1|7.357e-3769.41hypothetical protein PPTG_04211 [Phytophthora para... [more]
gi|1191053786|ref|XP_020904846.1|1.983e-3668.24anaphase-promoting complex subunit 11-like [Exaipt... [more]
gi|1160119598|ref|XP_020386128.1|2.338e-3668.24anaphase-promoting complex subunit 11 [Rhincodon t... [more]
gi|1173926822|gb|OQR80959.1|2.380e-3669.41anaphase-promoting complex subunit 11-like [Achlya... [more]
gi|813114441|ref|XP_012195377.1|2.765e-3670.59anaphase-promoting complex subunit 11 [Saprolegnia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8610rna8610Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications