rna8610, rna8610 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8610
Unique Name	rna8610
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2037
Alignment location	KK037249.1:418799..419984 -

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Properties


Property Name	Value
Product	anaphase-promoting complex subunit 11
Orig transcript id	gnl\|cribi\|Naga_100039g22.4418.mrna
Orig protein id	gnl\|cribi\|Naga_100039g22.4418
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:418799..419984 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g22	gene8345	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8610	rna8610-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22080.1	cds8583	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:418799..419984-
coding sequence from alignment at KK037249.1:418799..419984-

mRNA sequence

>rna8610 ID=rna8610|Name=rna8610|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp
GGAGAGGAGGCCATTTTATGATTTTCGGCCGTCGCCGCTATTCCTCTCTG
CGATCGATGCTGCGCCCCCTCACAATATTTATAACACAGTTTATGCTACT
GAGTGTTGGGATGCCGCCACGTAGTGCGGCCACATCTATTATTGAAGGAG
ATCGTGAGGGCGCACTTTTGTGGGAACGGTATGAGATGTACGTAAGGGAA
TTCAACAAGACTTTCGCGAGCACCCTCGACAAAGAGGCGGCTTTCAGCCA
CTTTGGTCGAACAGACGCATATCTCCGTGCCTTTTCCTCTCCCTCCTCTT
CCTCCACGCCTCCTTCTGCGCCATCCTTCACGGTCGGACACTCGCATTTC
AGTGACTGGAGTCCGGAAGAAATCCAAGCGCATTTCTCGGCCTCGTCTGT
CTCGTGGGCCCGGGCATTCGAATTTCCGGGGCAAAGCCAGGCACGGAACC
AAGGAAGAGGAGGTCTGAGGGTGCAAGAAGAAGATAGCACTGCCGCTTGG
CGAGAGCGAGACGGCGCCTTTGTCAGAGACGAGCGGGAGCCCGTGCCCGC
ACACACCGCCCTCGATGCTTTCCCCGCCGGCCTTGACCCTCCCGGCACAT
TGTCGGGCCCCAACACCCGTCCACACCCAGGAGGAACAGGCACAAGCTCC
GTGCCCGGGAATGATCCATTGTCTTTCCTCCGCCTCTTCCCTCCCTTTTC
GCACCTCCTGCCTCCCCCGCGCCCTCCGCCCGCCCTTCCCACCCACCTCG
ACTGGAGCCTTCCCTCCCTCAATCCGACGGGCCGCAGCGTCGTGTCGCCA
CCCGTCAACCAAGGTCGCTGCGGCGGATGTTGGTCGCTGGTCAGCGCGTC
CGTGGTGGAATCCGCCGTGGCCATCTCCACCCGCTCCCCCGTCACCCCTC
TCTCGGCGCAGGAGTTGCTGGACTGCGACGTGGCGTGGAACGCAGGCTGT
CTGGGGGGGAATCCGATCCAGTCCTACGCCTGGGTGAAGAAGCATGGGCT
GGCACCCGCCCAAGTCTACCCGTACCGCGGGGAGGAACAGGCGTGCGAGG
CGCGGAGGCAGGAAGCCGTCTCTGCGATTACGGGCTACCGTGTGCTGCCT
GCCTGCGACGAGGCCGGGCTGCTGGAGGCGGTGGCGCGGCAGCCCGTGGC
CGTGGGCATAGCGGGTCAGCATCCTTCCTTCTTATTCTACGCGGGGGGCA
TCTACGACGACGAGGCGTGCGGGAGACGGGAGGGCGGGGCCACGGTTTTG
AACCACGCCTTGGTGGTGGTTGGGTACGGGCGGGACGCGAAGACAGGCGT
GCCCTACTGGAAGTGCAAGAATTCGTGGGGGCAAGCCTGGGGGGAAGACG
GCTTTGTGCGGATCCGGCGGTGGGAGACAGGCCCAGGGGCTGTGGGAAAA
GGGGGTGCTCGGGAGGGAGAGGGAGTGCTGTGCGGGGCCACGGGCGCGGG
GGTGTGTGGGCTGGCCCTTGCGCCCTCCATTCCTTTGGGTGCCTACGGAG
GGAACGCCACGGCCTGGCTGCAGGCACAGAGGATGATGGAGGGGAAGAAG
GACGGTGTCATTGGAGGACAGGAGCCGAAGAAAGGAGAGGAGGGAAAGGG
GAAGAGGGGGACGGGGAGGAAGGGAGCCTCGGGGGCAGACACGGACGATG
ACCCTATCGCCTCCTTGCTTTCAACCGAGGCGAGGCGGGTTGCGGTGGGA
TTGGTGGCGCTTCTGATCCTCTTGCTGGGTTTTTACTATTTCATGCGGCA
GCCGGTGTGGGACCCGTCCACGGCGGGGACGGGGGGAGCCTGGGGGGAGG
GGATGAGGAGGCAGGCAGCTCTGGGAGGAAAGCCGACCGATGGGAACGCA
GTAGGAGCGTCGCGGTACGGGTCCGTTTAAAGTAATGCATGGGCAACGCA
AGCGGCATGTACAATAGACATGTAAGATGAACAATTGAACTCTTTTCCCT
GCAAAACCGGAACATAGTCTGATGCTTTATTTGACGTTCCAATTTCGCTC
GGGCAGCGGTCGGGAGATTGAGACGTGCGCCCACTCT

protein sequence of rna8610

>rna8610-protein ID=rna8610-protein|Name=rna8610|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGG
CNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEFRA

mRNA from alignment at KK037249.1:418799..419984-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8610 ID=rna8610|Name=rna8610|organism=Nannochloropsis gaditana|type=mRNA|length=1186bp|location=Sequence derived from alignment at KK037249.1:418799..419984- (Nannochloropsis gaditana)
GACCTTCATTTTCCTCCTGCTTGGGACTAGTGACCCGACACACAACTTGT
AAGTTGCCCACGGAAAAAGCTAAGGAAGAGATGTCTTGCGTGCGCGCCTG
GTAAATTCCTCACATATTTTGTCATCCTTTCGACGGTAGCCGTCAGGTCT
CATTATAGTAAAGTGGTTCGAGGGTGGGCCGGCGATGCACTGTAATCGCA
AAACTTCATGAAGGTGAAGATAAAAAGGTGCGTCTTTACTTCCACGAATT
ATCGCGGTGTTGCGAAAAGCTCATCTGTAGTTGGCAAACAAATTTTATTT
ATCAACATTAGTAAAAATGTTTAATTTTTGTAATTGCGCTGACTTATACG
GACGACCTCTCGTTCCTGGCAGATGGCATGCTGTTGCCACATGGCAATGG
GACGTGAATGATGAGCGCTGCGGCATTTGTTACACGGCGTTCGAAGCCTG
CTGTCCGGATTGTCATATTCCAGGGGATGATTGTCCACCAGTGTGGGGGG
GCTGCAATCACGCCTTCCACATGCATTGCATAATGAAGGTAGGAACCCTC
GGATGGTGGCGACGACATGGAGAGCGTCAGCGGGAGGAATTTAAATTTGC
TTCGATTGACTTTAAAAACCAGTGTGAGACTGCTGGTTGAATCTTTCGAC
ACAAGAAAAAAAAATGGGGGGGACGTGATGTGTTGTGATATTGAGCGTCA
TGAAGAACCTCTACGCGGTGCCTTTATCAACCTGTCCTTCCTTTCCCAAC
AACTCTCAGTGGCTGAACAGCCAGCAGAACGCGAACAAACAGACATGCCC
GGCCTGCCGACAAAAATGGGAGTTCCGCGCGTGAGCGTGCACTGCCTTCT
CATGCGCTTCCGACAGCAATCAAGTCGAAGAGATCTGTTATCACTTTGTG
TGAATGTACATACCCCGACTGAGGGAAGCTTTAATGAAAGCTTAAGTTAA
GTGATAAATTGCGGTGTGGTGAGAGTGGGCGCACGTCTCAATCTCCCGAC
CGCTGCCCGAGCGAAATTGGAACGTCAAATAAAGCATCAGACTATGTTCC
GGTTTTGCAGGGAAAAGAGTTCAATTGTTCATCTTACATGTCTATTGTAC
ATGCCGCTTGCGTTGCCCATGCATTACTTTAAACGGACCCGTACCGCGAC
GCTCCTACTGCGTTCCCATCGGTCGGCTTTCCTCCC

Coding sequence (CDS) from alignment at KK037249.1:418799..419984-

>rna8610 ID=rna8610|Name=rna8610|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at KK037249.1:418799..419984- (Nannochloropsis gaditana)
TGGCTGAACAGCCAGCAGAACGCGAACAAACAGACATGCCCGGCCTGCCG
ACAAAAATGGGAGTTCCGCGCGTGAATGGCATGCTGTTGCCACATGGCAA
TGGGACGTGAATGATGAGCGCTGCGGCATTTGTTACACGGCGTTCGAAGC
CTGCTGTCCGGATTGTCATATTCCAGGGGATGATTGTCCACCAGTGTGGG
GGGGCTGCAATCACGCCTTCCACATGCATTGCATAATGAAGATGAAGGTG
AAGATAAAAAGTGGCTGAACAGCCAGCAGAACGCGAACAAACAGACATGC
CCGGCCTGCCGACAAAAATGGGAGTTCCGCGCGTGAATGGCATGCTGTTG
CCACATGGCAATGGGACGTGAATGATGAGCGCTGCGGCATTTGTTACACG
GCGTTCGAAGCCTGCTGTCCGGATTGTCATATTCCAGGGGATGATTGTCC
ACCAGTGTGGGGGGGCTGCAATCACGCCTTCCACATGCATTGCATAATGA
AGATGAAGGTGAAGATAAAAAGTGGCTGAACAGCCAGCAGAACGCGAACA
AACAGACATGCCCGGCCTGCCGACAAAAATGGGAGTTCCGCGCGTGAATG
GCATGCTGTTGCCACATGGCAATGGGACGTGAATGATGAGCGCTGCGGCA
TTTGTTACACGGCGTTCGAAGCCTGCTGTCCGGATTGTCATATTCCAGGG
GATGATTGTCCACCAGTGTGGGGGGGCTGCAATCACGCCTTCCACATGCA
TTGCATAATGAAGATGAAGGTGAAGATAAAAAG

Synonyms

Publications