EWM22136.1, cds8561 (CDS) Nannochloropsis gaditana

Overview
NameEWM22136.1
Unique Namecds8561
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:346704..346934 -
Alignment locationKK037249.1:345894..346502 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22136.1
Productsnf7 family protein
Orig transcript idgnl|cribi|Naga_100060g5.5504.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:346704..346934 -
KK037249.1supercontigKK037249.1:345894..346502 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|585102556|gb|EWM22136.1| (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
Query:    1 MAFWLPFRCCMKHIIQYTGPPPWPETGGENLDLPHRLPSCLDSTLTALLSVAYPYVRDTMEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTDEDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279
            MAFWLPFRCCMKHIIQYTGPPPWPETGGENLDLPHRLPSCLDSTLTALLSVAYPYVRDTMEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTDEDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL
Sbjct:    1 MAFWLPFRCCMKHIIQYTGPPPWPETGGENLDLPHRLPSCLDSTLTALLSVAYPYVRDTMEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTDEDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|298714989|emb|CBJ27710.1| (similar to vacuolar protein sorting 24 homolog [Ectocarpus siliculosus])

HSP 1 Score: 141.739 bits (356), Expect = 1.057e-37
Identity = 78/180 (43.33%), Postives = 121/180 (67.22%), Query Frame = 0
Query:   65 FGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTDED-EVDMEVQKVLEELAFNMMS---DAP 240
              +KV+P E+AK+ +RSI  E+R+++R ++ +ER E+K+ K+I+ +AK+G     A+ +LAK+LV SR  + +M  GKA L SVQMQ+Q Q++ IKV G ++KS +++ ++  LVKIPEL +   ++A EMERAGLVEE+V D +   D    D + D EV KV+ E+   ++    DAP
Sbjct:    5 LHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLSLTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAP 184          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|985409731|ref|XP_015370275.1| (PREDICTED: charged multivesicular body protein 3-like [Diuraphis noxia])

HSP 1 Score: 133.65 bits (335), Expect = 1.362e-34
Identity = 80/223 (35.87%), Postives = 143/223 (64.13%), Query Frame = 0
Query:   60 MEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSV--DVTD-EDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279
            M  FG    V+P ++ K+   +I +E   +DR +  I+REE K+ + +++ AK+G   +    ILAK+++RSRKT  K++  K  + S+QMQ++ Q+S +++AG +QKS++V++T++ L+K+PE++   +++++EM +AG++EEM+ D M++V  D  D E+E   E+ KVL E+    +  A   PM   +  G +V +E  + EE +++E  +MK RL AL
Sbjct:    1 MGIFGKSATVDPKDQVKQWTSTIRKETYKLDRQIRGIQREEEKVKRSMKEAAKKG--NKDVCIILAKEILRSRKTINKLITSKTHMNSIQMQMKNQLSVLRMAGSLQKSSEVMQTMHNLIKVPEVAATMRDLSKEMMKAGIIEEMLDDTMENVMDDPEDMEEEAQSEIDKVLWEITAGALGQA---PMAVTETPGGSVLQETEIVEEDDDLE--EMKNRLQAL 216          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|985412952|ref|XP_015371997.1| (PREDICTED: charged multivesicular body protein 3-like [Diuraphis noxia])

HSP 1 Score: 132.494 bits (332), Expect = 4.093e-34
Identity = 80/223 (35.87%), Postives = 142/223 (63.68%), Query Frame = 0
Query:   60 MEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSV--DVTD-EDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279
            M  FG    V+P ++ K+   +I +E   +DR +  I+REE K+ + +++ AK+G   +    ILAK+++RSRKT  K++  K  ++S+QMQ++ Q+S +++AG +QKS +V++T++ L+K+PE++   +++++EM +AG++EEM+ D M++V  D  D E+E   E+ KVL E+    +  A   PM   +  G +V +E    E  E+ +L++MK RL AL
Sbjct:    1 MGIFGKSATVDPKDQVKQWTSTIRKETYKLDRQIRGIQREEEKVKRSMKEAAKKG--NKDVCIILAKEILRSRKTINKLITSKTHMSSIQMQMKNQLSVLRMAGSLQKSTEVMQTMHNLIKVPEVAATMRDLSKEMMKAGIIEEMLDDTMENVMDDPEDMEEEAQSEIDKVLWEITAGALGQA---PMAVTETPGGSVLQETETVE--EDGDLEEMKNRLQAL 216          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|242247335|ref|NP_001156086.1| (charged multivesicular body protein 3-like [Acyrthosiphon pisum] >gi|239793447|dbj|BAH72838.1| ACYPI001542 [Acyrthosiphon pisum])

HSP 1 Score: 132.109 bits (331), Expect = 4.961e-34
Identity = 80/223 (35.87%), Postives = 142/223 (63.68%), Query Frame = 0
Query:   60 MEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSV--DVTD-EDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279
            M  FG    V+P ++ K+   +I +E   +DR +  I+REE K+ + +++ AK+G   +    ILAK+++RSRKT  K++  K  ++S+QMQ++ Q+S +++AG +QKS +V++T++ L+K+PE++   +++++EM +AG++EEM+ D M++V  D  D E+E   E+ KVL E+    +  A   PM   +  G +V +E    E  E+ +L++MK RL AL
Sbjct:    1 MGIFGKSATVDPKDQVKQWTSTIRKETYKLDRQIRGIQREEEKVKRSMKEAAKKG--NKDVCIILAKEILRSRKTINKLITSKTHMSSIQMQMKNQLSILRMAGSLQKSTEVMQTMHNLIKVPEVAATMRDLSKEMMKAGIIEEMLDDTMENVMDDPEDMEEEAQSEIDKVLWEITAGALGQA---PMAVTETPGGSVLQETETVE--EDGDLEEMKNRLQAL 216          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|1207948145|ref|XP_021363976.1| (charged multivesicular body protein 3-like [Mizuhopecten yessoensis] >gi|1205895417|gb|OWF45348.1| Charged multivesicular body protein 3 [Mizuhopecten yessoensis])

HSP 1 Score: 132.109 bits (331), Expect = 5.070e-34
Identity = 74/183 (40.44%), Postives = 120/183 (65.57%), Query Frame = 0
Query:   60 MEFFGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTD--EDEVDMEVQKVLEELAFNMMSDAP 240
            M  FG   +  P E  ++    + +E  ++DR++  I+REE K+ +EI+ LAK+G+  + A+ ILAK++VRSRK   ++   KA L SV MQ++ Q + +++ G +QKS +VLK++  LVK+ ++S   +EM++EM +AG++EEM+ DA +S+D  D  E+E D EV+KVL EL    +  AP
Sbjct:    1 MGLFGKTPEKSPKELVQEWNSKLRKEGHNIDRSIKSIQREEAKVTREIKALAKKGD--KDAIKILAKEVVRSRKAVNRLYSSKAQLNSVSMQLKNQAAMVRMTGALQKSGEVLKSMQELVKVSDISNTMREMSKEMMKAGIMEEMMEDAFESMDDQDELEEEADTEVEKVLFELTAGTLGKAP 181          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|341884967|gb|EGT40902.1| (hypothetical protein CAEBREN_20433 [Caenorhabditis brenneri])

HSP 1 Score: 129.413 bits (324), Expect = 3.880e-33
Identity = 72/178 (40.45%), Postives = 123/178 (69.10%), Query Frame = 0
Query:   65 FGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTD-EDEVDMEVQKVLEELAFNMMSDAPV 241
            FGKK +P EE ++L+R + +E+R++DR +  I+REE+K+ KEI++ AK+G+  +    ILAK L++SRK   K+   KA + SV M +Q Q++T+++AG +Q+S +V+K +  LVK+PE+ K  +EM+ EM + G++EEM+ D ++SV+  D E++   EV+ +L E+    +  AP+
Sbjct:    4 FGKKKDPKEEVRELQRKMRQEMRALDRQVYSIQREEQKVTKEIKEAAKKGD--KDVCVILAKSLIQSRKAISKIHVSKAQINSVIMCMQEQLATMRMAGALQRSTEVMKNMQQLVKVPEIMKTMREMSAEMMKLGIIEEMIEDTLESVEPADLEEKAQEEVENILWEVTQGELGKAPL 179          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|341899020|gb|EGT54955.1| (hypothetical protein CAEBREN_01508 [Caenorhabditis brenneri])

HSP 1 Score: 129.798 bits (325), Expect = 5.816e-33
Identity = 73/178 (41.01%), Postives = 123/178 (69.10%), Query Frame = 0
Query:   65 FGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTD-EDEVDMEVQKVLEELAFNMMSDAPV 241
            FGKK +P EE ++L+R + +E+RS+DR +  I+REE+K+ KEI++ AK+G+  +    ILAK L++SRK   K+   KA + SV M +Q Q++T+++AG +Q+S +V+K +  LVK+PE+ K  +EM+ EM + G++EEM+ D ++SV+  D E++   EV+ +L E+    +  AP+
Sbjct:    4 FGKKKDPKEEVRELQRKMRQEMRSLDRQVYSIQREEQKVTKEIKEAAKKGD--KDVCVILAKSLIQSRKAISKIHVSKAQINSVIMCMQEQLATMRMAGALQRSTEVMKNMQQLVKVPEIMKTMREMSAEMMKLGIIEEMIEDTLESVEPADLEEKAQEEVENILWEVTQGELGKAPL 179          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|597859087|gb|EYC08511.1| (hypothetical protein Y032_0065g3590 [Ancylostoma ceylanicum])

HSP 1 Score: 129.028 bits (323), Expect = 7.131e-33
Identity = 83/216 (38.43%), Postives = 134/216 (62.04%), Query Frame = 0
Query:   65 FGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTD-EDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279
            FGKK +P E+ ++++R +  EIR++DR +  I+REE+K+ KEI++ AK+G+  R    +LAK L++SRK   K+   KA + SV M +Q Q++T+++AG +QKS  VL+ +  LVK+PE+ K  +EM++EM + G+++EM+ + MDS++  D E+    EV ++L E+    +  AP            A GE  G  E  E  +L  M +RL AL
Sbjct:    5 FGKKKDPKEQVREMQRKMRGEIRALDRQIYGIQREEQKVTKEIKEAAKKGD--RDVCVVLAKSLLQSRKAVAKIHVSKAQINSVIMCMQEQLATMRMAGSLQKSTQVLQAMQNLVKVPEIMKTMREMSQEMMKLGIIDEMIEETMDSMEPADLEEAAQEEVDRILWEVTAGELGKAP----------AAATGELGGEQEATE--DLSAMAQRLAAL 206          
BLAST of EWM22136.1 vs. NCBI_GenBank
Match: gi|510864494|gb|EPB79778.1| (SNF7 family protein [Ancylostoma ceylanicum] >gi|597859089|gb|EYC08513.1| hypothetical protein Y032_0065g3590 [Ancylostoma ceylanicum])

HSP 1 Score: 129.028 bits (323), Expect = 7.165e-33
Identity = 83/216 (38.43%), Postives = 134/216 (62.04%), Query Frame = 0
Query:   65 FGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTD-EDEVDMEVQKVLEELAFNMMSDAPVEPMKAVQEAGEAVGEEAGMDEEREEMELKKMKERLNAL 279
            FGKK +P E+ ++++R +  EIR++DR +  I+REE+K+ KEI++ AK+G+  R    +LAK L++SRK   K+   KA + SV M +Q Q++T+++AG +QKS  VL+ +  LVK+PE+ K  +EM++EM + G+++EM+ + MDS++  D E+    EV ++L E+    +  AP            A GE  G  E  E  +L  M +RL AL
Sbjct:    4 FGKKKDPKEQVREMQRKMRGEIRALDRQIYGIQREEQKVTKEIKEAAKKGD--RDVCVVLAKSLLQSRKAVAKIHVSKAQINSVIMCMQEQLATMRMAGSLQKSTQVLQAMQNLVKVPEIMKTMREMSQEMMKLGIIDEMIEETMDSMEPADLEEAAQEEVDRILWEVTAGELGKAP----------AAATGELGGEQEATE--DLSAMAQRLAAL 205          
The following BLAST results are available for this feature:
BLAST of EWM22136.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102556|gb|EWM22136.1|0.000e+0100.00snf7 family protein [Nannochloropsis gaditana][more]
gi|298714989|emb|CBJ27710.1|1.057e-3743.33similar to vacuolar protein sorting 24 homolog [Ec... [more]
gi|985409731|ref|XP_015370275.1|1.362e-3435.87PREDICTED: charged multivesicular body protein 3-l... [more]
gi|985412952|ref|XP_015371997.1|4.093e-3435.87PREDICTED: charged multivesicular body protein 3-l... [more]
gi|242247335|ref|NP_001156086.1|4.961e-3435.87charged multivesicular body protein 3-like [Acyrth... [more]
gi|1207948145|ref|XP_021363976.1|5.070e-3440.44charged multivesicular body protein 3-like [Mizuho... [more]
gi|341884967|gb|EGT40902.1|3.880e-3340.45hypothetical protein CAEBREN_20433 [Caenorhabditis... [more]
gi|341899020|gb|EGT54955.1|5.816e-3341.01hypothetical protein CAEBREN_01508 [Caenorhabditis... [more]
gi|597859087|gb|EYC08511.1|7.131e-3338.43hypothetical protein Y032_0065g3590 [Ancylostoma c... [more]
gi|510864494|gb|EPB79778.1|7.165e-3338.43SNF7 family protein [Ancylostoma ceylanicum] >gi|5... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8588rna8588Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications