rna8578, rna8578 (mRNA) Nannochloropsis gaditana

Overview
Namerna8578
Unique Namerna8578
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length324
Alignment locationKK037249.1:318430..319853 +

Link to JBrowse

Properties
Property NameValue
Productubiquitin fusion degradaton
Orig transcript idgnl|cribi|Naga_100060g17.5480.mrna
Orig protein idgnl|cribi|Naga_100060g17.5480
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:318430..319853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100060g17gene8314Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8578rna8578-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22112.1cds8551Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8578 ID=rna8578|Name=rna8578|organism=Nannochloropsis gaditana|type=mRNA|length=324bp
ATGCTGACGCTTGGCCTCCTCTTGAGCCTTGCGCTCCCTGTATCGTCAGG
TCCAAAGGATGAGCTCTCCAAAATGCGTAAAGGCTTATCAATCGCAAAAC
AATGCTTTAAGTGCATATCATCTACCTCATACAAAGTTTATGCTTCTTTT
TCGAGTGAGTGTTGCAAAAAAAGGACTAAAGACCAACCCTCGTATCGGTA
CTCACCGCTCAGCCTTCCGCAAGGCCTCTGCTCGTCGTTTTTCCTGCTCT
TTTTTGAGCTTGGAGACGCTGCGGTCGAAATCCATTCAAATCTCCCCCTC
GAATTTCTCACTGAGGCTCTCTGA
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protein sequence of rna8578

>rna8578-protein ID=rna8578-protein|Name=rna8578|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MLFQLSLLPAEGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLE
AEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKG
TYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLR
VIGLEPTQAVTVIDTDLTVDVEVPEEQTERERVEKRLSTDAGGVKGQVVG
GGGPPPRVSQSCESRGQEAGMEESSVNSGAKEEERRKSMIAAQLSKLAPE
PDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRL
HMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAGKRETLMYEACA
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mRNA from alignment at KK037249.1:318430..319853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8578 ID=rna8578|Name=rna8578|organism=Nannochloropsis gaditana|type=mRNA|length=1424bp|location=Sequence derived from alignment at KK037249.1:318430..319853+ (Nannochloropsis gaditana)
TTAAAGCATTGTTTTGCGATTGATAAGCCTTTACGCATTTTGGAGAGCTC
ATCCTTTGGACCTGACGATACAGGGAGCGCAAGGCTCAAGAGGAGGCCAA
GCGTCAGCATCAGCTCATCCAGGATGCCGTCGAAAAACGGCGACAGGCAC
AGCTGGACAGAATAGAACAAGATCGGCTGGctgcagaagaagaaaagaga
ctGACGGCAGGGATAACGTACTCGTGTGATTTGTGGCCGTATAAGGTttc
aggggagggggataaGATAATCCTACCACCAAGCGCGCTGGAAACATTGA
CTCAACAGGATGCCCTGGCGCTGGGACCCATGCTGTTCCAATTAAGTCTT
CTACCTGCCGAAGGCAACAAAAGCAAACAACTACCTGCGGGGGCGCGCGT
GACGCACGCAGGCGTCTTGGAATTCTCGGCCGAAGACGGTCGCATCGGCT
TGCCTTTGAAAGTCCGAAAGAGCCTCGAGGCGGAGCCGGAGGAGACAAGA
GAGGACGGAAGTCGGGGCATGGAAAAAAGAATGGAAGGTCCtggcggcga
agagggggatTCGAGAGAGTCCTCGGCGTGGGGCTCGGGATGGAAGGTCC
GAGTAAAATATGTCCGCCTCGAGAAAGGCACCTACGCCAAGGTCCAGCCC
CGGACAGGCAACCTCTGGCACGTCCCAGAGCTCAAAGGCATGCTGGAGAT
GAATTTACAGAACCACGCGACGCTGTCAGAGGGAGACGTGCTTCAAGTGT
GGTACCGAGGGAGGTGTTTCGATCTGCGGGTGATAGGATTGGAGCCCACT
CAAGCGGTGACGGTGATTGACACGGATTTGActgtggacgtggaggtgcc
AGAGGAGCagacggagagggaaagggtggagaAGAGGTTGTCAACGGATG
CGGGTGGCGTTAAGGGGCAAGTTGTAGGCGGCGGAGGACCTCCACCGCGC
GTGTCCCAATCGTGCGAGAGCCGTGGGCAGGAagcgggcatggaggagtC
GTCGGTGAACAGTGGggcaaaagaggaagagagacgAAAGAGCATGATAG
CCGCACAATTATCAAAGTTGGCACCCGAACCGGATGAAGGGAACGGCGAT
TGGATCGCTCTGGTGGTGCGGAAGCCGGATGGGTCGATGATTTCCCGCAG
ATTTTTGAGATCTCAACCGTTTCAGGATGTTTTTCGGTTCGTTGAAGCCA
CCTCAGTCAGTAGTGATCATGACCGCTTACATATGACGTATCGTCTGGTC
ACACGTTTTCCACGGCGGGTTTTTACAGTGGGGGAGACTGCGGCGCAGAG
TGTCGGAGAAGTTTTGGGCTCagaggcggggaaaagggaaaccCTTATGT
ATGAAGCGTGTGCTTGAGTGGCGAAAAGCCGACCATGCAACATCAAAAAG
CATAAACATATGTACATTTCAATA
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Coding sequence (CDS) from alignment at KK037249.1:318430..319853+

>rna8578 ID=rna8578|Name=rna8578|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at KK037249.1:318430..319853+ (Nannochloropsis gaditana)
ATGCTGTTCCAATTAAGTCTTCTACCTGCCGAAGGCAACAAAAGCAAACA
ACTACCTGCGGGGGCGCGCGTGACGCACGCAGGCGTCTTGGAATTCTCGG
CCGAAGACGGTCGCATCGGCTTGCCTTTGAAAGTCCGAAAGAGCCTCGAG
GCGGAGCCGGAGGAGACAAGAGAGGACGGAAGTCGGGGCATGGAAAAAAG
AATGGAAGGTCCtggcggcgaagagggggatTCGAGAGAGTCCTCGGCGT
GGGGCTCGGGATGGAAGGTCCGAGTAAAATATGTCCGCCTCGAGAAAGGC
ACCTACGCCAAGGTCCAGCCCCGGACAGGCAACCTCTGGCACGTCCCAGA
GCTCAAAGGCATGCTGGAGATGAATTTACAGAACCACGCGACGCTGTCAG
AGGGAGACGTGCTTCAAGTGTGGTACCGAGGGAGGTGTTTCGATCTGCGG
GTGATAGGATTGGAGCCCACTCAAGCGGTGACGGTGATTGACACGGATTT
GActgtggacgtggaggtgccAGAGGAGCagacggagagggaaagggtgg
agaAGAGGTTGTCAACGGATGCGGGTGGCGTTAAGGGGCAAGTTGTAGGC
GGCGGAGGACCTCCACCGCGCGTGTCCCAATCGTGCGAGAGCCGTGGGCA
GGAagcgggcatggaggagtCGTCGGTGAACAGTGGggcaaaagaggaag
agagacgAAAGAGCATGATAGCCGCACAATTATCAAAGTTGGCACCCGAA
CCGGATGAAGGGAACGGCGATTGGATCGCTCTGGTGGTGCGGAAGCCGGA
TGGGTCGATGATTTCCCGCAGATTTTTGAGATCTCAACCGTTTCAGGATG
TTTTTCGGTTCGTTGAAGCCACCTCAGTCAGTAGTGATCATGACCGCTTA
CATATGACGTATCGTCTGGTCACACGTTTTCCACGGCGGGTTTTTACAGT
GGGGGAGACTGCGGCGCAGAGTGTCGGAGAAGTTTTGGGCTCagaggcgg
ggaaaagggaaaccCTTATGTATGAAGCGTGTGCTTGA
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Synonyms
Publications