EWM22112.1, cds8551 (CDS) Nannochloropsis gaditana

Overview
NameEWM22112.1
Unique Namecds8551
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:318759..319796 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22112.1
Productubiquitin fusion degradaton
Orig transcript idgnl|cribi|Naga_100060g17.5480.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:318759..319796 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR004854UFD1
IPR001012UBX_dom
Homology
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|585102532|gb|EWM22112.1| (ubiquitin fusion degradaton [Nannochloropsis gaditana])

HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTERERVEKRLSTDAGGVKGQVVGGGGPPPRVSQSCESRGQEAGMEESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAGKRETLMYEACA 345
            MLFQLSLLPAEGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTERERVEKRLSTDAGGVKGQVVGGGGPPPRVSQSCESRGQEAGMEESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAGKRETLMYEACA
Sbjct:    1 MLFQLSLLPAEGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTERERVEKRLSTDAGGVKGQVVGGGGPPPRVSQSCESRGQEAGMEESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAGKRETLMYEACA 345          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|298709434|emb|CBJ31340.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.546 bits (288), Expect = 6.472e-25
Identity = 125/423 (29.55%), Postives = 175/423 (41.37%), Query Frame = 0
Query:    1 MLFQLSLL-----PAEGNKSKQLPA-------GARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLR-------------------VIGLEPTQAVTVIDTDLTVDVEVPE---EQTERERVEKRLSTDAGGVKGQVVG--GGGPPPRVSQSCESRGQEAGMEESSVNSGAKEE--------------------------------------ERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLH----MTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAG---KRETLMYE 342
            MLF+L+       P    + ++ PA         R THAGVLEF A++G IGLP KV  SL        +  SR  ++ +      E    E  A      V V+YVRL K T+A+V P T  L  V EL+ MLE N++NHATL+ GD L VW RG+ F L+                   V+ L P   VTVIDTD+ +++++PE   EQ + +  + R  T    +    +   G  P   +S     RG   G + SSV +G ++                                       E+ +     QL +  P  +EG        +R  +G    R           FRF +A  V  D           YRLV  FPRRV T  + +A   G  L  EAG   K+E+++ E
Sbjct:  117 MLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGA--AAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEG---VFTCQLRTTEGKFTRR-----------FRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASA---GTTL-HEAGLTSKQESVILE 519          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|551675560|ref|XP_005840534.1| (hypothetical protein GUITHDRAFT_160865 [Guillardia theta CCMP2712] >gi|428184700|gb|EKX53554.1| hypothetical protein GUITHDRAFT_160865 [Guillardia theta CCMP2712])

HSP 1 Score: 109.383 bits (272), Expect = 2.367e-23
Identity = 91/316 (28.80%), Postives = 136/316 (43.04%), Query Frame = 0
Query:   25 THAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNL----------------------WHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDV-----EVPEEQTERERVEKRLSTDAGGVKGQVVGGGGPPPRVSQSCESRGQEAGMEESSVNSGAKEEERRKSMIAAQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRR 313
            TH GVLEF AE+  IG+P KV+  L                       G   ++ E+   G   +++ KYVRL KG    +QPR  +                       W +P L+G+L   LQ  +TL+ GDV++V +  + F+L+V+ L+P  AV ++DTD+ VD+     EV E + E  R  KR   +    K +++       +   + E  G EA            EE  + S+IA +L                     P+G  I RRFLRS   Q++F F++A S     D     Y + T FPR+
Sbjct:  132 THCGVLEFVAEEETIGIPPKVQMCL-----------------------GAVTEANETIEGGFSTRIQTKYVRLPKGESVSLQPRNKSFSDYMSSLDMKQSKPVYDSSRGKWVLPGLEGVLHTALQGLSTLTVGDVVKVVHNDKEFELQVLQLQPEDAVMLVDTDIQVDITPSKAEVDEMEAEEAR--KRREAEENEKKERIIADRKKSAQSRLTPEPAGNEA------------EEACQMSLIAVKL---------------------PNGKRIQRRFLRSSTLQNLFDFIDAES-----DFACPKYNVCTAFPRK 384          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|1117576501|ref|XP_019456777.1| (PREDICTED: uncharacterized protein LOC109357329 [Lupinus angustifolius] >gi|1102705158|gb|OIW04145.1| hypothetical protein TanjilG_00705 [Lupinus angustifolius])

HSP 1 Score: 108.227 bits (269), Expect = 2.493e-22
Identity = 69/182 (37.91%), Postives = 101/182 (55.49%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAGAR--VTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTER 180
            + FQLSL+ AEG+   Q     +   TH+GVLEF+A+DG +G+P  V  +L +E       GS      +E P                  V V+YV L KGTYAK+QP       +P  K +LE +L+ HATLS GD+L V Y    + LRV+ L+P+  V+V++TD+ VD+  P++ +E+
Sbjct:  115 LYFQLSLVHAEGSSVTQGNYRDKQGTTHSGVLEFTADDGSVGIPPHVWNNLFSE-------GS------IESP-----------------LVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSRGDILTVNYGELAYKLRVLELKPSSTVSVLETDIEVDIVDPDKASEK 266          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|357493375|ref|XP_003616976.1| (ubiquitin fusion degradation protein (UFD1), putative [Medicago truncatula] >gi|355518311|gb|AES99934.1| ubiquitin fusion degradation protein (UFD1), putative [Medicago truncatula])

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-21
Identity = 70/186 (37.63%), Postives = 100/186 (53.76%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAGARV--THAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVP---EEQTERE 181
            M FQLSL   EG+ S Q     ++  TH+GVLEF+A++G +GLP  V  +L +E               ME P                  + V+YV L KGTYAK+QP  G    +P  K +LE +L+ HATLS+GD+  V Y      LRV+ L+P+ +V+V++TD+ VD+  P    EQT++ 
Sbjct:  115 MYFQLSLTHKEGSSSTQDTDKEKMGTTHSGVLEFTADEGSVGLPPHVWNNLFSEG------------CIMESP-----------------LIEVRYVWLPKGTYAKLQPERGGFSDLPNHKAILETSLRQHATLSQGDIFTVNYGKLEHKLRVLELKPSSSVSVLETDIEVDIVDPIDFSEQTDQH 271          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|1021548965|ref|XP_016165885.1| (uncharacterized protein LOC107608692 [Arachis ipaensis])

HSP 1 Score: 105.916 bits (263), Expect = 1.590e-21
Identity = 69/176 (39.20%), Postives = 98/176 (55.68%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAGAR--VTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVP 174
            M FQLSL+  EG+ S +     +   TH+GVLEF+AE+G +GLP  V  +L +E          GM K    P                  V V+YV L KGTYAK+QP       +P  K +LE +L+ HATLS+GD+L V Y    + LRV+ L+P+++V+V++TD+ VD+  P
Sbjct:  115 MYFQLSLVHTEGSSSIEDIDKEKQGTTHSGVLEFTAEEGSVGLPPHVWSNLFSE----------GMVK---SP-----------------LVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELVYKLRVLELKPSKSVSVLETDIEVDIVDP 260          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|356501298|ref|XP_003519462.1| (PREDICTED: uncharacterized protein LOC100777384 [Glycine max] >gi|734416590|gb|KHN38469.1| Ubiquitin fusion degradation protein 1 like [Glycine soja] >gi|947125189|gb|KRH73395.1| hypothetical protein GLYMA_02G271100 [Glycine max] >gi|1179666405|dbj|BAX25321.1| WBb98N11.19 [Glycine max])

HSP 1 Score: 105.531 bits (262), Expect = 2.206e-21
Identity = 66/183 (36.07%), Postives = 97/183 (53.01%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLP---AGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTER 180
            + FQLSL+  E   S Q        R TH+GVLEF+A++G +GLP  V  +L +E               ++ P                  V V+YV L KGTYAK+QP       +P  K +LE  L+ HATLS+GD+L V Y    + LRV+ L+P+ +V+V++TD+ VD+  P+  +E+
Sbjct:  117 LYFQLSLVHEESTSSIQTTDKEKQGRTTHSGVLEFTADEGSVGLPPHVWNNLFSE-------------GTLKAP-----------------LVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETCLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVDPDTSSEK 269          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|828296198|ref|XP_012568593.1| (PREDICTED: uncharacterized protein LOC101492821 [Cicer arietinum])

HSP 1 Score: 105.531 bits (262), Expect = 2.218e-21
Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAGAR--VTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTER 180
            M FQLSL+  EG+   Q     +   TH+GVLEF+A++G +GLP  V  +L +E          G    ME P                  V V+YV L KGTYAK+QP       +P  K +LE +L+ HATLS+GD+  V Y    + LRV+ L+P+ +V+V++TD+ VD+  P E  E+
Sbjct:  137 MYFQLSLIQKEGSSGIQGTDEDKRGTTHSGVLEFTADEGSVGLPPHVWNNLFSE----------GF---MESP-----------------LVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILETSLRQHATLSKGDIFTVNYGELEYKLRVLELKPSSSVSVLETDIEVDIVDPIESLEK 288          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|1045405017|dbj|GAU14467.1| (hypothetical protein TSUD_250070 [Trifolium subterraneum])

HSP 1 Score: 104.76 bits (260), Expect = 3.796e-21
Identity = 67/182 (36.81%), Postives = 97/182 (53.30%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAG--ARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTER 180
            M FQLSL+    +   Q   G  A  TH+GVLEF+A++G +GLP  V  +L +E               +E P                  V V+YV L KGTYAK+QP       +P  K +LE +L+ HATLS+GD+  V Y    + LRV+ L+P+ +V+V++TD+ VD+  P E +E+
Sbjct:  115 MYFQLSLIQKNDSSRIQGTDGEKAGTTHSGVLEFTADEGSVGLPPHVWNNLFSEA------------SIVESP-----------------MVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILETSLRQHATLSQGDIFTVNYGEHEYKLRVLELKPSASVSVLETDIEVDIVDPIETSEQ 267          
BLAST of EWM22112.1 vs. NCBI_GenBank
Match: gi|593489493|ref|XP_007141614.1| (hypothetical protein PHAVU_008G210900g [Phaseolus vulgaris] >gi|561014747|gb|ESW13608.1| hypothetical protein PHAVU_008G210900g [Phaseolus vulgaris])

HSP 1 Score: 103.99 bits (258), Expect = 6.884e-21
Identity = 66/182 (36.26%), Postives = 98/182 (53.85%), Query Frame = 0
Query:    1 MLFQLSLLPAEGNKSKQLPAGAR--VTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTER 180
            + FQLSL+  E + S Q     +   TH+GVLEF+A++G +GLP  V  +L +E                E P                  V V+YV L KGTYAK+QP       +P  K +LE +L+ HATLS+GD+L V Y    + LRV+ L+P+ +V+V++TD+ VD+  P+  +E+
Sbjct:  115 IYFQLSLVHKESSSSIQDIDKEKQGTTHSGVLEFTADEGSVGLPPHVWNNLFSEGTS-------------ESP-----------------LVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILETSLRQHATLSQGDILIVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVDPDTSSEK 266          
The following BLAST results are available for this feature:
BLAST of EWM22112.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102532|gb|EWM22112.1|0.000e+0100.00ubiquitin fusion degradaton [Nannochloropsis gadit... [more]
gi|298709434|emb|CBJ31340.1|6.472e-2529.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|551675560|ref|XP_005840534.1|2.367e-2328.80hypothetical protein GUITHDRAFT_160865 [Guillardia... [more]
gi|1117576501|ref|XP_019456777.1|2.493e-2237.91PREDICTED: uncharacterized protein LOC109357329 [L... [more]
gi|357493375|ref|XP_003616976.1|1.255e-2137.63ubiquitin fusion degradation protein (UFD1), putat... [more]
gi|1021548965|ref|XP_016165885.1|1.590e-2139.20uncharacterized protein LOC107608692 [Arachis ipae... [more]
gi|356501298|ref|XP_003519462.1|2.206e-2136.07PREDICTED: uncharacterized protein LOC100777384 [G... [more]
gi|828296198|ref|XP_012568593.1|2.218e-2137.91PREDICTED: uncharacterized protein LOC101492821 [C... [more]
gi|1045405017|dbj|GAU14467.1|3.796e-2136.81hypothetical protein TSUD_250070 [Trifolium subter... [more]
gi|593489493|ref|XP_007141614.1|6.884e-2136.26hypothetical protein PHAVU_008G210900g [Phaseolus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8578rna8578Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications