rna8549, rna8549 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8549
Unique Name	rna8549
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1448
Alignment location	KK037249.1:239765..240928 -

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome b5 domain-containing
Orig transcript id	gnl\|cribi\|Naga_100064g17.4097.mrna
Orig protein id	gnl\|cribi\|Naga_100064g17.4097
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:239765..240928 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100064g17	gene8286	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8549	rna8549-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22140.1	cds8522	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:239765..240928-
coding sequence from alignment at KK037249.1:239765..240928-

mRNA sequence

>rna8549 ID=rna8549|Name=rna8549|organism=Nannochloropsis gaditana|type=mRNA|length=1448bp
AATGCACGACCATGACATGCAATAGGATGAGCAGCAGAAGGAGGAGACGC
CTATTGCCCGTCAACTTGTATTCCCTGCTGCTTTTCCTGTTTACTACCTC
GCTTCCTGTGGGGTACTCTTTTTTCACTCCTAGAGCAAATTCCATAAATT
GTCAGCCGCCTTACTCTAAAAGCTCACCGTTGCAGCATCGCTACGGTCGC
ACTTTCCTGCAGAATATCAGAAAAAGTAGAATCTGCCTCGTGCAGATGTC
TTTCCTGTCCTCCACCGCTGCCCCCGTTTCCGCCACCGCCCCCTCCCCGG
TACATCAAGCACCTGCCCGACAATCGATCCTAGTGTTGGGTGCGGGTGCT
GTGGGATCTCTGTACGGGGGGCGTTTATGCGAGGCTGGGCACGACGTCAC
GTTTTTGATGCGCCGAGAGTACGATGCTGTGGCTGCGACGGGACTGCGGA
TCAGCTCCCCCGACGGGGACATGTTTTTCCCACAACCATCCATCGCACGA
TCCATTGAGGAAGTTGCGGTATCGAGGGCAAGGCGGGCACGTAGGAAAGG
GGCCGGAGAAGGAGGGGGTGGGGAAGGGAAAGGCGATCAAGCAGGAGGGA
TGGCGGGAGATGCGGAACGGCGGAAGGTCGTGGAGGAGACGAGGGATATA
GAAGGAGCAGAAGGGGAGGCATACGTGCCCGTCGACTGGGTCATTGTCAC
CCTCAAGTCATCTTCCTTCCACGCCATCCCCAGCCTGCTCGAGGACCGCC
GCGTGGTCGGAAATGCGACCCGGATTTTGGTGTTGATGAACGGTTACGGC
TTGGAGGAGGATCTGGTCGGGCAGGGGATCGATGGAAAGAGGGTCTTCGG
AGGCATGGCCTTCGTGTGCGCCAACCGCGGCCCGGTGGGCTCGGGGGAGA
TTGCCCACCTCAAGTACGGAAAATTGATGATCGGGCATTACGAGGACGAC
CCCGTCGAGCTCTCCCTCGTCGCCGGTCTCTTCAAAGGTGCCAAGGTCGA
GGTGGAAACGACGCCGTGCCTGCTGCATGGTCGATGGAGCAAGTGCTGCT
GGAACATCCCCTTTAACGGGTTGGGTTGCATTTTGGGCGGGAAAAGCGTG
GACCACATCGTGCAGACGCCCGAATTAAGGAGACTGGCGACGTTGGTCAT
GGCCGATGTCGTGAAGGTGGCCAACGTGGAGTTGGGAGGGAGGGAGGGAG
GGCAGGAGGGAGGGCGGGAAGGAGGGAAAATCGAGCCAAGTTTTCAGGAG
CATCTCTTCGCCTTAACGGACGCGATGGGTCCTTATATGTCCAGCACCGT
CCTCGACCTCCTGGGGGGGTTACCGATGGAAACGGAGTACATGTTCTTGC
GGCCGCTGAAGAGGGCGGAGGCGCTGGGAGTGGAGGTGCCGTACTTGGAG
GGGGTGGCTTTGGCCGTGGAAGGAATACGAAAATCGCGGGGTTTGTGA

protein sequence of rna8549

>rna8549-protein ID=rna8549-protein|Name=rna8549|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MRKRTAGQRSLDYMVLPTAEELVEELKKKQKGPSSRDILGRAMFGVAAFL
VMITIGWQLGKLHRHKKGYSPSDLVKSRSAAKKAAASTLSPEPSRQSILS
MVEAEEEALAPVPRLFTAADLQRAKDAYTTASPSTHPILLAIVGHVFDVS
KGAQFYAPPPVEEAGGEGGGEGGEEGLREDVDGLSEEECRGVWRWVNFFK
EKEDYPFVGRLVGMYFDGDGRPTRNYLNFRACVGRAGQGEGEEACATSWE
KGKGHTVWCEGAGKVPRRRVKEGGREGQEARGRCVCVDLKDGEAHAEEGD
GSLVVYPGCEPRSSLCTF

mRNA from alignment at KK037249.1:239765..240928-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8549 ID=rna8549|Name=rna8549|organism=Nannochloropsis gaditana|type=mRNA|length=1164bp|location=Sequence derived from alignment at KK037249.1:239765..240928- (Nannochloropsis gaditana)
ATGCGGAAGCGCACGGCAGGCCAGCGGAGTCTGGACTACATGGTGCTGCC
TACCGCCGAGGAGCTGGTCGAGGAACTGAAAAAGAAACGTAAGAAAATGC
GGGGAGAGGGTCTGGGCACCAGTTAGTGTGCCATTCTGAAGAATTGACAG
GCCTCGTGGATCTCATTTTTTGTTTCAAAAATCCTCCTGCGCTCTGACCC
TTTGTAGAGAAAGGTCCCTCTTCTCGAGACATTTTAGGGCGGGCAATGTT
CGGGGTCGCCGCATTTTTGGTCATGATCACGATCGGGTGGCAACTTGGCA
AATTGCACCGGCACAAAAAAGGTTATTCTCCCTCCGACCTGGTGAAATCT
CGCAGCGCCGCCAAGAAAGCTGCTGCTTCCACACTTTCCCCTGAACCCTC
GCGGCAAAGCATTCTGTCCATGGTGGAGGCAGAAGAGGAAGCACTGGCAC
CCGTCCCCCGGCTTTTCACGGCGGCGGATTTACAACGGGCGAAAGACGCC
TACACGACCGCATCGCCCTCCACCCACCCTATCCTCTTGGCGATTGTCGG
CCATGTCTTTGATGTCTCCAAGGGCGCACAGTTTTATGCCCCGCCTCCCG
TGGAGGAAGCGGGAGGGGAAGGCGGGGGGGAGGGCGGGTAGGGAGGGCGG
GAGGGAGGGCGGGGGGGATTACGGGTTTTTCTCGTTTCGAGACGCGGCCC
GCGCCTATGTAACGGGAGATTTCAGCGAAGAAGGCCTGCGGGAGGATGTA
GACGGTCTGAGCGAAGAGGAGTGCCGCGGGGTCTGGAGATGGGTGAACTT
TTTCAAGGAGAAGGAGGATTATCCCTTCGTGGGCAGGCTGGTCGGCATGT
ACTTTGATGGGGACGGAAGACCGACCCGGAATTATCTGAATTTTCGGGCC
TGTGTGGGGAGGGCTGGGCAAGGGGAGGGGGAGGAGGCGTGTGCGACCAG
CTGGGAGAAAGGGAAAGGGCACACCGTGTGGTGCGAGGGGGCGGGGAAGG
TCCCCCGGCGCCGGGTGAAGGAGGGAGGGAGGGAGGGGCAGGAGGCAAGG
GGAAGGTGCGTGTGCGTGGACCTGAAGGACGGAGAGGCGCATGCAGAGGA
GGGGGATGGGAGCTTGGTCGTGTATCCCGGATGTGAGCCGCGAAGCTCCT
TGTGCACGTTTTAG

Coding sequence (CDS) from alignment at KK037249.1:239765..240928-

>rna8549 ID=rna8549|Name=rna8549|organism=Nannochloropsis gaditana|type=CDS|length=2871bp|location=Sequence derived from alignment at KK037249.1:239765..240928- (Nannochloropsis gaditana)
CGAAGAAGGCCTGCGGGAGGATGTAGACGGTCTGAGCGAAGAGGAGTGCC
GCGGGGTCTGGAGATGGGTGAACTTTTTCAAGGAGAAGGAGGATTATCCC
TTCGTGGGCAGGCTGGTCGGCATGTACTTTGATGGGGACGGAAGACCGAC
CCGGAATTATCTGAATTTTCGGGCCTGTGTGGGGAGGGCTGGGCAAGGGG
AGGGGGAGGAGGCGTGTGCGACCAGCTGGGAGAAAGGGAAAGGGCACACC
GTGTGGTGCGAGGGGGCGGGGAAGGTCCCCCGGCGCCGGGTGAAGGAGGG
AGGGAGGGAGGGGCAGGAGGCAAGGGGAAGGTGCGTGTGCGTGGACCTGA
AGGACGGAGAGGCGCATGCAGAGGAGGGGGATGGGAGCTTGGTCGTGTAT
CCCGGATGTGAGCCGCGAAGCTCCTTGTGCACGTTTTAGAGAAAGGTCCC
TCTTCTCGAGACATTTTAGGGCGGGCAATGTTCGGGGTCGCCGCATTTTT
GGTCATGATCACGATCGGGTGGCAACTTGGCAAATTGCACCGGCACAAAA
AAGGTTATTCTCCCTCCGACCTGGTGAAATCTCGCAGCGCCGCCAAGAAA
GCTGCTGCTTCCACACTTTCCCCTGAACCCTCGCGGCAAAGCATTCTGTC
CATGGTGGAGGCAGAAGAGGAAGCACTGGCACCCGTCCCCCGGCTTTTCA
CGGCGGCGGATTTACAACGGGCGAAAGACGCCTACACGACCGCATCGCCC
TCCACCCACCCTATCCTCTTGGCGATTGTCGGCCATGTCTTTGATGTCTC
CAAGGGCGCACAGTTTTATGCCCCGCCTCCCGTGGAGGAAGCGGGAGGGG
AAGGCGGGGGGGAGGGCGGATGCGGAAGCGCACGGCAGGCCAGCGGAGTC
TGGACTACATGGTGCTGCCTACCGCCGAGGAGCTGGTCGAGGAACTGAAA
AAGAAACCGAAGAAGGCCTGCGGGAGGATGTAGACGGTCTGAGCGAAGAG
GAGTGCCGCGGGGTCTGGAGATGGGTGAACTTTTTCAAGGAGAAGGAGGA
TTATCCCTTCGTGGGCAGGCTGGTCGGCATGTACTTTGATGGGGACGGAA
GACCGACCCGGAATTATCTGAATTTTCGGGCCTGTGTGGGGAGGGCTGGG
CAAGGGGAGGGGGAGGAGGCGTGTGCGACCAGCTGGGAGAAAGGGAAAGG
GCACACCGTGTGGTGCGAGGGGGCGGGGAAGGTCCCCCGGCGCCGGGTGA
AGGAGGGAGGGAGGGAGGGGCAGGAGGCAAGGGGAAGGTGCGTGTGCGTG
GACCTGAAGGACGGAGAGGCGCATGCAGAGGAGGGGGATGGGAGCTTGGT
CGTGTATCCCGGATGTGAGCCGCGAAGCTCCTTGTGCACGTTTTAGAGAA
AGGTCCCTCTTCTCGAGACATTTTAGGGCGGGCAATGTTCGGGGTCGCCG
CATTTTTGGTCATGATCACGATCGGGTGGCAACTTGGCAAATTGCACCGG
CACAAAAAAGGTTATTCTCCCTCCGACCTGGTGAAATCTCGCAGCGCCGC
CAAGAAAGCTGCTGCTTCCACACTTTCCCCTGAACCCTCGCGGCAAAGCA
TTCTGTCCATGGTGGAGGCAGAAGAGGAAGCACTGGCACCCGTCCCCCGG
CTTTTCACGGCGGCGGATTTACAACGGGCGAAAGACGCCTACACGACCGC
ATCGCCCTCCACCCACCCTATCCTCTTGGCGATTGTCGGCCATGTCTTTG
ATGTCTCCAAGGGCGCACAGTTTTATGCCCCGCCTCCCGTGGAGGAAGCG
GGAGGGGAAGGCGGGGGGGAGGGCGGATGCGGAAGCGCACGGCAGGCCAG
CGGAGTCTGGACTACATGGTGCTGCCTACCGCCGAGGAGCTGGTCGAGGA
ACTGAAAAAGAAACCGAAGAAGGCCTGCGGGAGGATGTAGACGGTCTGAG
CGAAGAGGAGTGCCGCGGGGTCTGGAGATGGGTGAACTTTTTCAAGGAGA
AGGAGGATTATCCCTTCGTGGGCAGGCTGGTCGGCATGTACTTTGATGGG
GACGGAAGACCGACCCGGAATTATCTGAATTTTCGGGCCTGTGTGGGGAG
GGCTGGGCAAGGGGAGGGGGAGGAGGCGTGTGCGACCAGCTGGGAGAAAG
GGAAAGGGCACACCGTGTGGTGCGAGGGGGCGGGGAAGGTCCCCCGGCGC
CGGGTGAAGGAGGGAGGGAGGGAGGGGCAGGAGGCAAGGGGAAGGTGCGT
GTGCGTGGACCTGAAGGACGGAGAGGCGCATGCAGAGGAGGGGGATGGGA
GCTTGGTCGTGTATCCCGGATGTGAGCCGCGAAGCTCCTTGTGCACGTTT
TAGAGAAAGGTCCCTCTTCTCGAGACATTTTAGGGCGGGCAATGTTCGGG
GTCGCCGCATTTTTGGTCATGATCACGATCGGGTGGCAACTTGGCAAATT
GCACCGGCACAAAAAAGGTTATTCTCCCTCCGACCTGGTGAAATCTCGCA
GCGCCGCCAAGAAAGCTGCTGCTTCCACACTTTCCCCTGAACCCTCGCGG
CAAAGCATTCTGTCCATGGTGGAGGCAGAAGAGGAAGCACTGGCACCCGT
CCCCCGGCTTTTCACGGCGGCGGATTTACAACGGGCGAAAGACGCCTACA
CGACCGCATCGCCCTCCACCCACCCTATCCTCTTGGCGATTGTCGGCCAT
GTCTTTGATGTCTCCAAGGGCGCACAGTTTTATGCCCCGCCTCCCGTGGA
GGAAGCGGGAGGGGAAGGCGGGGGGGAGGGCGGATGCGGAAGCGCACGGC
AGGCCAGCGGAGTCTGGACTACATGGTGCTGCCTACCGCCGAGGAGCTGG
TCGAGGAACTGAAAAAGAAAC

Synonyms

Publications