rna8541, rna8541 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8541
Unique Name	rna8541
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1898
Alignment location	KK037249.1:211539..213923 +

Link to JBrowse

Properties


Property Name	Value
Product	gpn-loop gtpase 2
Orig transcript id	gnl\|cribi\|Naga_100064g28.4113.mrna
Orig protein id	gnl\|cribi\|Naga_100064g28.4113
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:211539..213923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100064g28	gene8278	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8541	rna8541-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22156.1	cds8514	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:211539..213923+
coding sequence from alignment at KK037249.1:211539..213923+

mRNA sequence

>rna8541 ID=rna8541|Name=rna8541|organism=Nannochloropsis gaditana|type=mRNA|length=1898bp
AAACGACAAGAAATCATGTACCTCACGTGTGCCAGCATCCGCTTCATACT
AATTTTGGTAGACTGCCTGTTTCTATGGTATACGCACGGAGACATTGATT
CAAACAGAAAAATGACGCAAAGAAAATATCGGCGGGTGCCCGTTGCTCTG
AGCGAGACGGCCCTCCTCTTTTGAGAGCGACAAATATCCCGTAGGAGTGA
ATTCTACTGCATGGCAGCCGGACAGTAAAATTTGGGAGTTGTACTGTGCG
ACATAGAGAGTTGGATGTTTCTTTTAACAATATCCTTTATCTATCACGAA
GTCAGAAGCACGGAGAAGGAGGGGAGGTTGAAGCAGCGTGTACTGCGTTT
TTAAAGCAGCCATGTGATTTATCTGGTTCCTTCTTTTCTCCACCAACTTT
CTAAAGATATCAAACAAATGAAGAGAAATCTCATCCATGGACCACGGTTT
GGACAAGCTGTCATCGGCCCTCCCGGTGCTGGGAAGACAACGTATTGCCA
CGGCATAGCCCGTTTCCTGAGTGCGCGGGGTCGACCTGTGGCGGTCGTCA
ACTTGGACCCTGCCAACGATAAACTTCCTTTTCCTGTCGACATAGACGTC
TCAGAACTCGTGAATTTGGCGGTAAGGCTTGGACAGGAAAAGGGTGAGAG
GGATCGAGCGCAAAGCTTCCTCCGTCCGGTGCTGGGAACGGACCCTGAAG
AGGGATGCCACAACGCAATGTGGGTCTAGACGACAGCCGAAAGGATGTGC
ATGGCTTTTGGCTTATGTATGCTGTAAAATCGTTATTTTGGGGGGGTGGT
CTGTTCCCCTGTTCTCCCTCTCTTTGGTCGATCGCTTCCTGTCTGCCCTT
CCTGTCCACGCACTTTTGAGCACAAGTTGCTCTCCCACTCCGGCGTCGAT
GTCGCACAAATATTCCCTCGCCATTCAAACGTCTCTTTCATTGGTACTAC
CCAGGATGTCATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGTGT
ACTGCATGGATTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGACTG
GAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAGGT
CGAGCTCTACACGCATGGCGAGGCGGTTCAACGTCTGTTGCAACGTCTGG
AGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCTGGTAGACGCCCACCAC
TGCAGCGATGCCGGCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACAAC
CATGGTGCGGCTGGAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGATT
TGGTCGAATCCTATGGGCGCTTGGCTTTTGACTTGAACTTCTACACAGAT
GTGGTTGATGTGCAACGTCTTTTGCCCTATGTGGGGACACGATCCACCTA
CAAAGACCCAGGGCGGGAAGGGGAGGAGGGCGGAGGCAGGGAGGACGAAA
ACGGATGGGAAGAGGAAGTTAGGGAAGGCTCTATCGAGGATGGGGGTGAG
GGAAAAAGAGACGGACGGGAAGCAGGAACGTCGGGGGGGGGGAGGTTCGC
CAGACGGTATCGCAAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGACT
TTTCATTGGTCGCATTCCATCCCTTGAATATTCAAGATGCCGATTGTATC
GAAAGAGTGCTGGCGGTAGTGGATAAGTGCAATGGATACCTTTTAGGGGC
AGAAGAAAGAGCACTGGTGGGAAGGGAGGGAGAAGCAGCTTTGTTGTCAA
CACTGTCGGGCTTGGCATTCAGAGCACAACCTGACGCGGATCGTGTAAAG
GATGTGCAAGATAGATACATGGATATCGAAGACAGGGACGAAAATTCCCT
GTCAAAAAACAAAGCGAGATAAAGTAAATATAGCAAGGGGAAAGCATA

protein sequence of rna8541

>rna8541-protein ID=rna8541-protein|Name=rna8541|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MKRNLIHGPRFGQAVIGPPGAGKTTYCHGIARFLSARGRPVAVVNLDPAN
DKLPFPVDIDVSELVNLADVMETHNLGPNGGLVYCMDYLEQNFDWLLERL
EALQGRRYVLFDFPGQVELYTHGEAVQRLLQRLEKWGCRLTAVHLVDAHH
CSDAGKFISAVLISLTTMVRLELPHVNVLSKVDLVESYGRLAFDLNFYTD
VVDVQRLLPYVGTRSTYKDPGREGEEGGGREDENGWEEEVREGSIEDGGE
GKRDGREAGTSGGGRFARRYRKLNEALCELIEDFSLVAFHPLNIQDADCI
ERVLAVVDKCNGYLLGAEERALVGREGEAALLSTLSGLAFRAQPDADRVK
DVQDRYMDIEDRDENSLSKNKAR

mRNA from alignment at KK037249.1:211539..213923+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8541 ID=rna8541|Name=rna8541|organism=Nannochloropsis gaditana|type=mRNA|length=2385bp|location=Sequence derived from alignment at KK037249.1:211539..213923+ (Nannochloropsis gaditana)
AAACGACAAGAAATCATGTACCTCACGTGTGCCAGCATCCGCTTCATACT
AATTTTGGTAGACTGCCTGTTTCTATGGTATACGCACGGAGACATTGATT
CAAACAGAAAAATGACGCAAAGAAAATATCGGCGGGTGCCCGTTGCTCTG
AGCGAGACggccctcctcttttgaGAGCGACAAATATCCCGTAGGAGTGA
ATTCTACTGCATGGCAGCCGGACAGTAAAATTTGGGAGTTGTACTGTGCG
ACATAGAGAGTTGGATGTTTCTTTTAACAATATCCTTTATCTATCACGAA
GTCAGAAgcacggagaaggaggggaggttgaagcaGCGTGTACTGCGTTT
TTAAAGCAGCCATGTGATTTATCTggttccttcttttctccacCAACTTT
CTAAAGATATCAAACAAATGAAGAGAAATCTCATCCATGGACCACGGTTT
GGACAAGCTGTCATCGGCCCTCCCGGTGCTGGGAAGACAACGTATTGCCA
CGGCATAGCCCGTTTCCTGAGTGCGCGGGGTCGACCTGTGGCGGTCGTCA
ACTTGGACCCTGCCAACGATAaacttccttttcctgtcgaCATAGACGTC
TCAGAACTCGTGAATTTGGCGGTAAGGCTTGGACAGGAAAAGGGTGAGAG
GGATCGAGCGCaaagcttcctccgtccGGTGCTGGGAACGGACCCTGAAG
AGGGATGCCACAACGCAATGTGGGTCTAGACGACAGCCGAAAGGATGTGC
ATGGCTTTTGGCTTATGTATGCTGTAAAATCGTTATTTTGGGGGGGTGGT
CTGTTCCCctgttctccctctctttggTCGATCGCTTCCTGTCTGCCCTT
CCTGTCCACGCACTTTTGAGCACAAGTTGCTCTCCCACTCCGGCGTCGAT
GTCGCACAAATATTCCCTCGCCATTCAAACGTCTCTTTCATTGGTACTAC
CCAGGATGTCATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGTGT
ACTGCATGGATTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGACTG
GAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAGGT
ATGCGCGGGGCAATAGTGGTAATGTCCGCGTGTAGAATGCGGGGTTTAGG
GGGGCGTGCTTGATCCACCTGGGAAGGAAAACTGGAGGGGGCTGTCAAGC
AGGGAGGCCTCTTGGACACAGGCAGGGGCTGGTCTCAGGGCCTGTAGTAT
TGTGAGCAAACGCAGGCTATGAAGGTTTTATGAAATGTCGTTCGTGACTC
CTGGTTACTAtcgtatatatatatatacatcgTCCCCTCCCATGGGCCCG
GGCGCCGGTGGtatcccttcctgccctctctctACGCCCGGGGCTCCACG
TGCTCAAACGGTCCTGCACCTtgaccctctttccttctgcACGCGGCGCG
CACCCGAACAGGTCGAGCTCTACACGCATGGCGAGGCGGTTCAACGTCTG
TTGCAACGTCTGGAGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCTGGT
AGACGCCCACCACTGCAGGTAGGTGGCGTCGCCGATCTGGGGCCGGTAGC
GTTGATTTGAAATGGTGTGATCGTGGTTGACACATGCAAATGGCGGGTAT
AAacatctcctttccccccctaccctgtccttcccttcttagCGATGCCG
GCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACAACCATGGTGCGGCTG
GAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGATTTGGTCGAATCCTA
TGGGCGCTTGGCTTTTGACTTGAACTTCTACACAGATGTGGTTGATGTGC
AACGTCTTTTGCCCTATGTGGGGACACGATCCACCTACAAAGAcccaggg
cgggaaggggaggagggcggaggcagggaggacgaaaacggatgggaaga
ggaagttaGGGAAGGCTCTATCGAGGATGGGggtgagggaaaaagagacg
gacgggaagcaggaacgtcggggggggggaggttcgCCAGACGGTATCGC
AAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGACTTTTCATTGGTCGC
ATTCCATCCCTTGAATATTCAAGATGCCGATTGTATCGAAAGAGTGCTGG
CGGTAGTGGATAAGTGCAATGGATACCTTTTAGGGGCAGAAGAAAGAGCa
ctggtgggaagggagggagaagcagctTTGTTGTCAACACTGTCGGGCTT
GGCATTCAGAGCACAACCTGACGCGGATCGTGTAAAGGATGTGCAAGATA
GATACATGGATATCGAAGACAGGGACGAAAATTCCCTGTCAAAAAACAAA
GCGAGATAAAGTAAATATAGCAAGGGGAAAGCATA

Coding sequence (CDS) from alignment at KK037249.1:211539..213923+

>rna8541 ID=rna8541|Name=rna8541|organism=Nannochloropsis gaditana|type=CDS|length=4488bp|location=Sequence derived from alignment at KK037249.1:211539..213923+ (Nannochloropsis gaditana)
ATGAAGAGAAATCTCATCCATGGACCACGGTTTGGACAAGCTGTCATCGG
CCCTCCCGGTGCTGGGAAGACAACGTATTGCCACGGCATAGCCCGTTTCC
TGAGTGCGCGGGGTCGACCTGTGGCGGTCGTCAACTTGGACCCTGCCAAC
GATAaacttccttttcctgtcgaCATAGACGTCTCAGAACTCGTGAATTT
GGCGGATGTCATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGTGT
ACTGCATGGATTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGACTG
GAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAGGT
CGAGCTCTACACGCATGGCGAGGCGGTTCAACGTCTGTTGCAACGTCTGG
AGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCTGGTAGACGCCCACCAC
TGCAGCGATGCCGGCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACAAC
CATGGTGCGGCTGGAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGATT
TGGTCGAATCCTATGGGCGCTTGGCTTTTGACTTGAACTTCTACACAGAT
GTGGTTGATGTGCAACGTCTTTTGCCCTATGTGGGGACACGATCCACCTA
CAAAGAcccagggcgggaaggggaggagggcggaggcagggaggacgaaa
acggatgggaagaggaagttaGGGAAGGCTCTATCGAGGATGGGggtgag
ggaaaaagagacggacgggaagcaggaacgtcggggggggggaggttcgC
CAGACGGTATCGCAAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGACT
TTTCATTGGTCGCATTCCATCCCTTGAATATTCAAGATGCCGATTGTATC
GAAAGAGTGCTGGCGGTAGTGGATAAGTGCAATGGATACCTTTTAGGGGC
AGAAGAAAGAGCactggtgggaagggagggagaagcagctTTGTTGTCAA
CACTGTCGGGCTTGGCATTCAGAGCACAACCTGACGCGGATCGTGTAAAG
GATGTGCAAGATAGATACATGGATATCGAAGACAGGGACGAAAATTCCCT
GTCAAAAAACAAAGCGAGATAAATGAAGAGAAATCTCATCCATGGACCAC
GGTTTGGACAAGCTGTCATCGGCCCTCCCGGTGCTGGGAAGACAACGTAT
TGCCACGGCATAGCCCGTTTCCTGAGTGCGCGGGGTCGACCTGTGGCGGT
CGTCAACTTGGACCCTGCCAACGATAaacttccttttcctgtcgaCATAG
ACGTCTCAGAACTCGTGAATTTGGCGGATGTCATGGAGACACATAACCTG
GGACCCAACGGCGGCCTCGTGTACTGCATGGATTATTTGGAGCAAAACTT
TGACTGGCTGCTTGAACGACTGGAAGCTTTGCAAGGACGGCGCTACGTCC
TCTTCGATTTCCCCGGACAGGTCGAGCTCTACACGCATGGCGAGGCGGTT
CAACGTCTGTTGCAACGTCTGGAGAAGTGGGGCTGTCGGTTGACCGCCGT
GCATCTGGTAGACGCCCACCACTGCAGCGATGCCGGCAAGTTCATTTCGG
CCGTGCTCATTTCGTTGACAACCATGGTGCGGCTGGAACTCCCCCATGTC
AACGTTTTGAGTAAGGTAGATTTGGTCGAATCCTATGGGCGCTTGGCTTT
TGACTTGAACTTCTACACAGATGTGGTTGATGTGCAACGTCTTTTGCCCT
ATGTGGGGACACGATCCACCTACAAAGAcccagggcgggaaggggaggag
ggcggaggcagggaggacgaaaacggatgggaagaggaagttaGGGAAGG
CTCTATCGAGGATGGGggtgagggaaaaagagacggacgggaagcaggaa
cgtcggggggggggaggttcgCCAGACGGTATCGCAAGCTAAACGAGGCG
TTATGTGAGCTAATAGAGGACTTTTCATTGGTCGCATTCCATCCCTTGAA
TATTCAAGATGCCGATTGTATCGAAAGAGTGCTGGCGGTAGTGGATAAGT
GCAATGGATACCTTTTAGGGGCAGAAGAAAGAGCactggtgggaagggag
ggagaagcagctTTGTTGTCAACACTGTCGGGCTTGGCATTCAGAGCACA
ACCTGACGCGGATCGTGTAAAGGATGTGCAAGATAGATACATGGATATCG
AAGACAGGGACGAAAATTCCCTGTCAAAAAACAAAGCGAGATAAATGAAG
AGAAATCTCATCCATGGACCACGGTTTGGACAAGCTGTCATCGGCCCTCC
CGGTGCTGGGAAGACAACGTATTGCCACGGCATAGCCCGTTTCCTGAGTG
CGCGGGGTCGACCTGTGGCGGTCGTCAACTTGGACCCTGCCAACGATAaa
cttccttttcctgtcgaCATAGACGTCTCAGAACTCGTGAATTTGGCGGA
TGTCATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGTGTACTGCA
TGGATTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGACTGGAAGCT
TTGCAAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAGGTCGAGCT
CTACACGCATGGCGAGGCGGTTCAACGTCTGTTGCAACGTCTGGAGAAGT
GGGGCTGTCGGTTGACCGCCGTGCATCTGGTAGACGCCCACCACTGCAGC
GATGCCGGCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACAACCATGGT
GCGGCTGGAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGATTTGGTCG
AATCCTATGGGCGCTTGGCTTTTGACTTGAACTTCTACACAGATGTGGTT
GATGTGCAACGTCTTTTGCCCTATGTGGGGACACGATCCACCTACAAAGA
cccagggcgggaaggggaggagggcggaggcagggaggacgaaaacggat
gggaagaggaagttaGGGAAGGCTCTATCGAGGATGGGggtgagggaaaa
agagacggacgggaagcaggaacgtcggggggggggaggttcgCCAGACG
GTATCGCAAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGACTTTTCAT
TGGTCGCATTCCATCCCTTGAATATTCAAGATGCCGATTGTATCGAAAGA
GTGCTGGCGGTAGTGGATAAGTGCAATGGATACCTTTTAGGGGCAGAAGA
AAGAGCactggtgggaagggagggagaagcagctTTGTTGTCAACACTGT
CGGGCTTGGCATTCAGAGCACAACCTGACGCGGATCGTGTAAAGGATGTG
CAAGATAGATACATGGATATCGAAGACAGGGACGAAAATTCCCTGTCAAA
AAACAAAGCGAGATAAATGAAGAGAAATCTCATCCATGGACCACGGTTTG
GACAAGCTGTCATCGGCCCTCCCGGTGCTGGGAAGACAACGTATTGCCAC
GGCATAGCCCGTTTCCTGAGTGCGCGGGGTCGACCTGTGGCGGTCGTCAA
CTTGGACCCTGCCAACGATAaacttccttttcctgtcgaCATAGACGTCT
CAGAACTCGTGAATTTGGCGGATGTCATGGAGACACATAACCTGGGACCC
AACGGCGGCCTCGTGTACTGCATGGATTATTTGGAGCAAAACTTTGACTG
GCTGCTTGAACGACTGGAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCG
ATTTCCCCGGACAGGTCGAGCTCTACACGCATGGCGAGGCGGTTCAACGT
CTGTTGCAACGTCTGGAGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCT
GGTAGACGCCCACCACTGCAGCGATGCCGGCAAGTTCATTTCGGCCGTGC
TCATTTCGTTGACAACCATGGTGCGGCTGGAACTCCCCCATGTCAACGTT
TTGAGTAAGGTAGATTTGGTCGAATCCTATGGGCGCTTGGCTTTTGACTT
GAACTTCTACACAGATGTGGTTGATGTGCAACGTCTTTTGCCCTATGTGG
GGACACGATCCACCTACAAAGAcccagggcgggaaggggaggagggcgga
ggcagggaggacgaaaacggatgggaagaggaagttaGGGAAGGCTCTAT
CGAGGATGGGggtgagggaaaaagagacggacgggaagcaggaacgtcgg
ggggggggaggttcgCCAGACGGTATCGCAAGCTAAACGAGGCGTTATGT
GAGCTAATAGAGGACTTTTCATTGGTCGCATTCCATCCCTTGAATATTCA
AGATGCCGATTGTATCGAAAGAGTGCTGGCGGTAGTGGATAAGTGCAATG
GATACCTTTTAGGGGCAGAAGAAAGAGCactggtgggaagggagggagaa
gcagctTTGTTGTCAACACTGTCGGGCTTGGCATTCAGAGCACAACCTGA
CGCGGATCGTGTAAAGGATGTGCAAGATAGATACATGGATATCGAAGACA
GGGACGAAAATTCCCTGTCAAAAAACAAAGCGAGATAA

Synonyms

Publications