EWM22158.1, cds8511 (CDS) Nannochloropsis gaditana

Overview
NameEWM22158.1
Unique Namecds8511
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:209351..209563 +
Alignment locationKK037249.1:209667..209882 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22158.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100064g30.4115.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:209351..209563 +
KK037249.1supercontigKK037249.1:209667..209882 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|585102579|gb|EWM22158.1| (hypothetical protein Naga_100064g30 [Nannochloropsis gaditana])

HSP 1 Score: 293.123 bits (749), Expect = 1.474e-100
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:    1 MPSSKSVRFEDLDDGVDDGLYGMKVCLLSSIRFPATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVLNERQR 142
            MPSSKSVRFEDLDDGVDDGLYGMKVCLLSSIRFPATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVLNERQR
Sbjct:    1 MPSSKSVRFEDLDDGVDDGLYGMKVCLLSSIRFPATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVLNERQR 142          
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|553186876|ref|XP_005854506.1| (mitochondrial import tom22-like protein [Nannochloropsis gaditana CCMP526] >gi|422294550|gb|EKU21850.1| mitochondrial import tom22-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.942 bits (572), Expect = 7.358e-74
Identity = 116/142 (81.69%), Postives = 117/142 (82.39%), Query Frame = 0
Query:    1 MPSSKSVRFEDLDDGVDDGLYGMKVCLLSSIRFPATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVLNERQR 142
            MPSSKSVRFEDLDDGVDDGLYGMK                        GILK LYTQAGSYRKWVRSHSKKILSWGISLAWYFSMAS+LTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVLNERQR
Sbjct:    1 MPSSKSVRFEDLDDGVDDGLYGMK------------------------GILKNLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASMLTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVLNERQR 118          
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|553182979|ref|XP_005853819.1| (hypothetical protein NGA_0443500 [Nannochloropsis gaditana CCMP526] >gi|422295246|gb|EKU22545.1| hypothetical protein NGA_0443500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 58.9214 bits (141), Expect = 7.323e-9
Identity = 46/71 (64.79%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    1 MPSSKSVRFEDLDDGVDDGLYGMKVCLLSSIRFPATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKK 71
            MPSSKSVRFEDLDDGVDDGLYGMK                        GILK LYTQAGSYRKWVRSHSKK
Sbjct:    1 MPSSKSVRFEDLDDGVDDGLYGMK------------------------GILKNLYTQAGSYRKWVRSHSKK 47          
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|397586017|gb|EJK53474.1| (hypothetical protein THAOC_27088 [Thalassiosira oceanica])

HSP 1 Score: 55.8398 bits (133), Expect = 2.045e-7
Identity = 32/100 (32.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:   48 QGILKKLYTQAGSY----RKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMG-----MTLEPAVLN 138
            +G +K  +T+AG+       + +  +  +   G  + +Y +  SI+ ++PL  E+ RE  ++E +K+QVKEL  QGY   +LQ +G     + L PAVL 
Sbjct:    7 EGGIKGFFTRAGTSFLAGGLYAKEKAWTLAKMGGKVGFYVATTSIVVLMPLIFEIMREGQMIETDKLQVKELRQQGYSDSQLQELGFPKAALGLSPAVLK 106          
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|1173927896|gb|OQR81678.1| (hypothetical protein THRCLA_23313 [Thraustotheca clavata])

HSP 1 Score: 55.4546 bits (132), Expect = 3.208e-7
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 0
Query:   46 GQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMG 129
            G   ++ +   QAG +  W +    K+   G  L W  +   + TVIPL +E+ RE  V EME ++V+ L AQG+   ++  MG
Sbjct:   21 GLHAMMMQRMKQAGEWATWFKKQLFKLAHKGGRLTWIIATTMLFTVIPLGIEIMREADVKEMEALRVQSLKAQGFSAIQIANMG 104          
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|669169267|ref|XP_008619982.1| (hypothetical protein SDRG_15583 [Saprolegnia diclina VS20] >gi|813158057|ref|XP_012202377.1| hypothetical protein SPRG_07709 [Saprolegnia parasitica CBS 223.65] >gi|530728402|gb|EQC26644.1| hypothetical protein SDRG_15583 [Saprolegnia diclina VS20] >gi|641532989|gb|KDO26996.1| hypothetical protein SPRG_07709 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 55.4546 bits (132), Expect = 3.643e-7
Identity = 31/96 (32.29%), Postives = 46/96 (47.92%), Query Frame = 0
Query:   34 PATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMG 129
            PAT   H         ++ +   QAG +  W +    K+   G    W  S   + TVIPL +E+ RE  V EME ++V+ L AQG+   ++  MG
Sbjct:   17 PATGGLH--------AMMMQRMKQAGEWATWFKKQLIKLAHKGGRFTWIISTTMLFTVIPLGIEIMREADVKEMEALRVQSLKAQGFSAIQIANMG 104          
BLAST of EWM22158.1 vs. NCBI_GenBank
Match: gi|1173936882|gb|OQR87759.1| (hypothetical protein ACHHYP_08109 [Achlya hypogyna])

HSP 1 Score: 54.6842 bits (130), Expect = 6.802e-7
Identity = 28/84 (33.33%), Postives = 43/84 (51.19%), Query Frame = 0
Query:   46 GQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMG 129
            G   ++ +   QAG +  W +    K+   G    W  S   + TVIPL +E+ RE  V EME ++V+ L AQG+   ++  MG
Sbjct:   21 GLHAMMMQRMKQAGEWVTWFKKQLLKLAHKGGRFTWILSTTMLFTVIPLGIEIMREADVKEMEALRVQSLKAQGFSAIQIANMG 104          
The following BLAST results are available for this feature:
BLAST of EWM22158.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585102579|gb|EWM22158.1|1.474e-100100.00hypothetical protein Naga_100064g30 [Nannochlorops... [more]
gi|553186876|ref|XP_005854506.1|7.358e-7481.69mitochondrial import tom22-like protein [Nannochlo... [more]
gi|553182979|ref|XP_005853819.1|7.323e-964.79hypothetical protein NGA_0443500 [Nannochloropsis ... [more]
gi|397586017|gb|EJK53474.1|2.045e-732.00hypothetical protein THAOC_27088 [Thalassiosira oc... [more]
gi|1173927896|gb|OQR81678.1|3.208e-733.33hypothetical protein THRCLA_23313 [Thraustotheca c... [more]
gi|669169267|ref|XP_008619982.1|3.643e-732.29hypothetical protein SDRG_15583 [Saprolegnia dicli... [more]
gi|1173936882|gb|OQR87759.1|6.802e-733.33hypothetical protein ACHHYP_08109 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8538rna8538Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications