rna8531, rna8531 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8531
Unique Name	rna8531
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	621
Alignment location	KK037249.1:182549..184354 -

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100153g14.4143.mrna
Orig protein id	gnl\|cribi\|Naga_100153g14.4143
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:182549..184354 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100153g14	gene8269	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22169.1	cds8504	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8531	rna8531-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:182549..184354-
coding sequence from alignment at KK037249.1:182549..184354-

mRNA sequence

>rna8531 ID=rna8531|Name=rna8531|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
ATGCACCCTTCCACGGGCGGGGGGAGGGAGCGACAAGAGGAAGCTCATCG
GTTGATCACGGCCTTGATGGCCTCCAACGTGCCCATTGCCCGGGCTACCT
ACGAACACGCCTGCTACATGCTGAGCCTCCATGACGCCACAGACGGCCCT
GCGGGTACCCGGGGGTCCTCTGAACCCGGGCCCTCGTCCCGCGGCTACAA
AGACACCCTGCGTCGTATTTACGGGCATGGAGTTGCGGCGGGGGTACTGC
CTTCCATTGGCGAGGCCTCTGCCCCCGCCGTCCTTGAGCTGCGCGGGCTG
GGGCCCACCCTGGCCCGGCTAGCCTTGGTCATGTTTTTGGAGACCTGGGG
CCAGATTGCCTTTACGAAGGACGCGGAAGCATCGCCAGGATTGAGTGCCT
CGCAGCCTGCCTCAATCGTTATAATAACTGGTCCTGGACGCTTAAAAGCG
ACGGTGCAGCAATTTCTGCGGAGGGCCTGCCTGCCCTCGTTGCGCACTCA
GCCCCTGCCCTACAATCCCGGTCGACTGATCTTACCATTGACAGAAGTAC
AACACTGGCATGAGCGTGCAGGTATAGCCCGACTTTCATGGGAGGAAAGC
AGGGAGGATTGTGTCGGATAA

protein sequence of rna8531

>rna8531-protein ID=rna8531-protein|Name=rna8531|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLV
WGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLT
GERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALS
FLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWE
VCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSA
GAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIH
RGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSH
PPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRA
SCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEA
LALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGD
WQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWER
GVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKM
V

mRNA from alignment at KK037249.1:182549..184354-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8531 ID=rna8531|Name=rna8531|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp|location=Sequence derived from alignment at KK037249.1:182549..184354- (Nannochloropsis gaditana)
ATGCACATCCCCCCCAGTAGATCCAAACCTGGTAGTGGAGGGACCTTCAG
CAGCTCTACCCATGCCGGAGCTGTTATCACGCCCACGCCCGCACCTCCCG
CCATACTAACTGAAAAAAATCGTGTCACTCGTCCTCAACGACAATTGGTA
TGGGGAGAGGAGGAATTGCGCCTGCGCATTCGGGAAGTGGAGGGCGCGGT
GGAGACCTTGCGGGCGACAGCCTTGGCCCTATGTCGGGAGGGTCGGTGGG
TGGAGGCCGAAAAAGTCGTGCTACGCTTATACCGGGGCAACGACCTGACT
GGCGAACGGAAACGAAGCGAGGCTTGGGATCGTGACGGGGTGGAGGGGTA
CGGTGGGAGGAACGGGGGCTTCGAGCGGGTAGGAAGCGAGGTGAGCCACG
CCTATTTGAAGGCCTGCATCACCGCCCGGGCCTGGCCAGCGGCCTTGTCC
TTCTTAGACCAGCTTCTCTCCAGAAATGTGGTGGGGTCCACAGGGGAGGC
AGGACAGGAGGGTGGGGGGAAAAGCGGGGCCGGGGGAAAGGAGGGAGCGG
CCCCTGCCCTGGCCCTGCTGGACGTTAGGGTAGCGGAGGCGGCATGGGAG
GTATGTGGCGGCGCAGGCGATGCAAGCCGAATCCTCGCGGTGCTCCGATG
TACACAGCCACATTGCTTGGGCCCTGCCGTGCTGGATGTGGCCATGGATG
CATGCCTGGCGTGCCAGCGTCGTCTCCTCTCCTCTCTCCCTCCGTCTGCT
GGGGCAGGGGCAGCCAAGGGGGGTGAACAAAGGACGTTACGACAAGATAC
GCAGAGTAGGACGTCAGTAAGAGCCCTGGAGGCATCCTGCCCCAGTCAAG
TGGGCGTCACGGTCCTGTCCGTGCTGCGAGAGGCTCGGAAACGGATCCAT
CGAGGCGGAGCAGGGGTGGGACCCGCGCCACCCCCCCCCCCCACACGACC
ATCACCACCACCTTCGTCAACAACGTCCGCCCTCGGCAAGGGGGGGTCTG
CCCCAAAAGCCTCGACTGGGTCAGCGGAAGGAGGGGCATTGCCATCCCAC
CCTCCGGCCTTACTTTCCAGCCAGGGGTGGGAAACGGCCGCGGAGGCGCT
TCCCTCCGCGGCTTTTCTCCGCTTGCTCCTAGGAGAGGCCAAACTGGCTG
CTGCTTCCATGGCTCCTGTACATGTCGATCCTGCTGCCCCTGGCCGAGCG
TCTTGCCCAGCGTCTCCCTCAGTGCCTCCCCTTTCCCCCCCCTCTAGTCT
GTCCTTTCGTCCGCCCATGCTCCTCTTGTACGCACGCGCCATCCAGGCGA
GTGTGGTAGCGAAGGAGATCGCCGAAGCCCTGCTCCTTTACAACGAAGCC
CTTGCCCTGGTGGAGGGAGGGATGGAGGGAGGCAGGAAAGGCACCGCGGT
TGCTCTTCGTAGCAGCAACAGCGGCAGCGACGGCAGCAGCGAGAGGCTCC
CTCTCAGCATCCATGAGGCCGCGCTTGCCGCTCATGCTGTCCGGGGAGAT
TGGCAACAGGCGCTGGGGATCTTGGACCGGTTGCGGAAGGAGGACGGGCG
GGAAGGAGGGCGGGAGGGAGGGGGGGAGGGAGGGGGGCCCTCCCTGGCCT
GTTTCAACTCGGCTATCCGTGCGTGCTGTGTCGGGGATGAATGGGAGCGT
GGGGTAGGGTTGCTGCGACGCATGGAACGGGCAGGGGTCAGGGCAAACGA
GGAGACCTACGGGGTCATTTTGCAGGCCTTCCGGCGGACCGGGGCCTGGG
AAGGAAGCTTGAAACTGGTGGAGTACTTGGGGAAAGGGGGGGGGAAGATG
GTGTAG

Coding sequence (CDS) from alignment at KK037249.1:182549..184354-

>rna8531 ID=rna8531|Name=rna8531|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at KK037249.1:182549..184354- (Nannochloropsis gaditana)
ATGCACATCCCCCCCAGTAGATCCAAACCTGGTAGTGGAGGGACCTTCAG
CAGCTCTACCCATGCCGGAGCTGTTATCACGCCCACGCCCGCACCTCCCG
CCATACTAACTGAAAAAAATCGTGTCACTCGTCCTCAACGACAATTGGTA
TGGGGAGAGGAGGAATTGCGCCTGCGCATTCGGGAAGTGGAGGGCGCGGT
GGAGACCTTGCGGGCGACAGCCTTGGCCCTATGTCGGGAGGGTCGGTGGG
TGGAGGCCGAAAAAGTCGTGCTACGCTTATACCGGGGCAACGACCTGACT
GGCGAACGGAAACGAAGCGAGGCTTGGGATCGTGACGGGGTGGAGGGGTA
CGGTGGGAGGAACGGGGGCTTCGAGCGGGTAGGAAGCGAGGTGAGCCACG
CCTATTTGAAGGCCTGCATCACCGCCCGGGCCTGGCCAGCGGCCTTGTCC
TTCTTAGACCAGCTTCTCTCCAGAAATGTGGTGGGGTCCACAGGGGAGGC
AGGACAGGAGGGTGGGGGGAAAAGCGGGGCCGGGGGAAAGGAGGGAGCGG
CCCCTGCCCTGGCCCTGCTGGACGTTAGGGTAGCGGAGGCGGCATGGGAG
GTATGTGGCGGCGCAGGCGATGCAAGCCGAATCCTCGCGGTGCTCCGATG
TACACAGCCACATTGCTTGGGCCCTGCCGTGCTGGATGTGGCCATGGATG
CATGCCTGGCGTGCCAGCGTCGTCTCCTCTCCTCTCTCCCTCCGTCTGCT
GGGGCAGGGGCAGCCAAGGGGGGTGAACAAAGGACGTTACGACAAGATAC
GCAGAGTAGGACGTCAGTAAGAGCCCTGGAGGCATCCTGCCCCAGTCAAG
TGGGCGTCACGGTCCTGTCCGTGCTGCGAGAGGCTCGGAAACGGATCCAT
CGAGGCGGAGCAGGGGTGGGACCCGCGCCACCCCCCCCCCCCACACGACC
ATCACCACCACCTTCGTCAACAACGTCCGCCCTCGGCAAGGGGGGGTCTG
CCCCAAAAGCCTCGACTGGGTCAGCGGAAGGAGGGGCATTGCCATCCCAC
CCTCCGGCCTTACTTTCCAGCCAGGGGTGGGAAACGGCCGCGGAGGCGCT
TCCCTCCGCGGCTTTTCTCCGCTTGCTCCTAGGAGAGGCCAAACTGGCTG
CTGCTTCCATGGCTCCTGTACATGTCGATCCTGCTGCCCCTGGCCGAGCG
TCTTGCCCAGCGTCTCCCTCAGTGCCTCCCCTTTCCCCCCCCTCTAGTCT
GTCCTTTCGTCCGCCCATGCTCCTCTTGTACGCACGCGCCATCCAGGCGA
GTGTGGTAGCGAAGGAGATCGCCGAAGCCCTGCTCCTTTACAACGAAGCC
CTTGCCCTGGTGGAGGGAGGGATGGAGGGAGGCAGGAAAGGCACCGCGGT
TGCTCTTCGTAGCAGCAACAGCGGCAGCGACGGCAGCAGCGAGAGGCTCC
CTCTCAGCATCCATGAGGCCGCGCTTGCCGCTCATGCTGTCCGGGGAGAT
TGGCAACAGGCGCTGGGGATCTTGGACCGGTTGCGGAAGGAGGACGGGCG
GGAAGGAGGGCGGGAGGGAGGGGGGGAGGGAGGGGGGCCCTCCCTGGCCT
GTTTCAACTCGGCTATCCGTGCGTGCTGTGTCGGGGATGAATGGGAGCGT
GGGGTAGGGTTGCTGCGACGCATGGAACGGGCAGGGGTCAGGGCAAACGA
GGAGACCTACGGGGTCATTTTGCAGGCCTTCCGGCGGACCGGGGCCTGGG
AAGGAAGCTTGAAACTGGTGGAGTACTTGGGGAAAGGGGGGGGGAAGATG
GTGTAG

Synonyms

Publications