EWM22169.1, cds8504 (CDS) Nannochloropsis gaditana

Overview
NameEWM22169.1
Unique Namecds8504
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:182549..184354 -

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Properties
Property NameValue
Protein idEWM22169.1
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_100153g14.4143.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:182549..184354 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|585102596|gb|EWM22169.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1180.24 bits (3052), Expect = 0.000e+0
Identity = 601/601 (100.00%), Postives = 601/601 (100.00%), Query Frame = 0
Query:    1 MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALSFLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEALALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKMV 601
            MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALSFLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEALALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKMV
Sbjct:    1 MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALSFLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEALALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKMV 601          
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|298710948|emb|CBJ32258.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.5514 bits (166), Expect = 9.845e-9
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 0
Query:  490 AALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKL-------VEYLGKGGG 598
            +A++A A  G W++ALG+L R+             GEG  P++ C+ +A+ AC  G +WER VGLL+ M  AGV  +   Y   + A  ++G WE +L L       V  LG G G
Sbjct:  180 SAVSAMARTGQWRRALGLLGRM------------AGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDRICYNAAINACAQSGEWETALSLADEMRRSVPVLGTGAG 283          
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|298707411|emb|CBJ30040.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.2402 bits (160), Expect = 1.070e-7
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 0
Query:  490 AALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGG 597
            AA+ A A  G W+ AL +LD +R E            G  P++  F++AI AC  G +W R V LLR ME  GV  NE ++   + A  R G W  +L L++ +   G
Sbjct:  327 AAIDACAQGGAWEMALALLDEMRDE------------GIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAG 422          
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|299471045|emb|CBN78905.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.2402 bits (160), Expect = 1.243e-7
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 0
Query:  489 EAALAAHAVRGDWQQALGILDRLRK--------------EDGREGGREGG---------GEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLV 590
            +AAL   A  G W++ALGILD +++                GR+G  E            EG  P++ C+NSAI AC  GD+WE  V LLR M    V  +E +Y   ++A  R G WE  + L+
Sbjct:  114 QAALREAATTGKWREALGILDEMKEGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLL 238          
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|922887501|gb|KOO53081.1| (conserved unknown protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 65.4698 bits (158), Expect = 2.209e-7
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 0
Query:  488 HEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGG 597
            + AA+AA    G W++AL +LD +R              G  P+   FNSAI AC  G  WER + L+  M  AG+ AN  T+   L A  + G WE +++L+  + K G
Sbjct:  702 YSAAIAACEKAGRWEEALALLDAMR------------AAGVPPNEVSFNSAISACAKGGAWERALRLVDEMRAAGLNANTITFNSALSALAKAGLWERAMQLLMTMPKAG 799          
The following BLAST results are available for this feature:
BLAST of EWM22169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102596|gb|EWM22169.1|0.000e+0100.00Pentatricopeptide repeat containing protein [Nanno... [more]
gi|298710948|emb|CBJ32258.1|9.845e-936.21conserved unknown protein [Ectocarpus siliculosus][more]
gi|298707411|emb|CBJ30040.1|1.070e-736.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|299471045|emb|CBN78905.1|1.243e-735.20conserved unknown protein [Ectocarpus siliculosus][more]
gi|922887501|gb|KOO53081.1|2.209e-735.45conserved unknown protein [Chrysochromulina sp. CC... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8531rna8531Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications