EWM22169.1, cds8504 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|585102596|gb|EWM22169.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1180.24 bits (3052), Expect = 0.000e+0 Identity = 601/601 (100.00%), Postives = 601/601 (100.00%), Query Frame = 0
Query: 1 MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALSFLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEALALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKMV 601
MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALSFLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEALALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKMV
Sbjct: 1 MHIPPSRSKPGSGGTFSSSTHAGAVITPTPAPPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERKRSEAWDRDGVEGYGGRNGGFERVGSEVSHAYLKACITARAWPAALSFLDQLLSRNVVGSTGEAGQEGGGKSGAGGKEGAAPALALLDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAGVGPAPPPPPTRPSPPPSSTTSALGKGGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEALALVEGGMEGGRKGTAVALRSSNSGSDGSSERLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGGGKMV 601
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|298710948|emb|CBJ32258.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 68.5514 bits (166), Expect = 9.845e-9 Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 0
Query: 490 AALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKL-------VEYLGKGGG 598
+A++A A G W++ALG+L R+ GEG P++ C+ +A+ AC G +WER VGLL+ M AGV + Y + A ++G WE +L L V LG G G
Sbjct: 180 SAVSAMARTGQWRRALGLLGRM------------AGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDRICYNAAINACAQSGEWETALSLADEMRRSVPVLGTGAG 283
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|298707411|emb|CBJ30040.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 66.2402 bits (160), Expect = 1.070e-7 Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 0
Query: 490 AALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGG 597
AA+ A A G W+ AL +LD +R E G P++ F++AI AC G +W R V LLR ME GV NE ++ + A R G W +L L++ + G
Sbjct: 327 AAIDACAQGGAWEMALALLDEMRDE------------GIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAG 422
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|299471045|emb|CBN78905.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 66.2402 bits (160), Expect = 1.243e-7 Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 0
Query: 489 EAALAAHAVRGDWQQALGILDRLRK--------------EDGREGGREGG---------GEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLV 590
+AAL A G W++ALGILD +++ GR+G E EG P++ C+NSAI AC GD+WE V LLR M V +E +Y ++A R G WE + L+
Sbjct: 114 QAALREAATTGKWREALGILDEMKEGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLL 238
BLAST of EWM22169.1 vs. NCBI_GenBank
Match: gi|922887501|gb|KOO53081.1| (conserved unknown protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 65.4698 bits (158), Expect = 2.209e-7 Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 0
Query: 488 HEAALAAHAVRGDWQQALGILDRLRKEDGREGGREGGGEGGGPSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGKGG 597
+ AA+AA G W++AL +LD +R G P+ FNSAI AC G WER + L+ M AG+ AN T+ L A + G WE +++L+ + K G
Sbjct: 702 YSAAIAACEKAGRWEEALALLDAMR------------AAGVPPNEVSFNSAISACAKGGAWERALRLVDEMRAAGLNANTITFNSALSALAKAGLWERAMQLLMTMPKAG 799 The following BLAST results are available for this feature:
BLAST of EWM22169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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