EWM22176.1, cds8499 (CDS) Nannochloropsis gaditana

Overview
NameEWM22176.1
Unique Namecds8499
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:171106..171190 -
Alignment locationKK037249.1:170340..170776 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22176.1
ProductUncharacterized protein family UPF0136, Transmembrane
Orig transcript idgnl|cribi|Naga_100153g9.4150.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:171106..171190 -
KK037249.1supercontigKK037249.1:170340..170776 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005349UPF0136_TM
Homology
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BLAST of EWM22176.1 vs. NCBI_GenBank
Match: gi|585102603|gb|EWM22176.1| (Uncharacterized protein family UPF0136, Transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 346.665 bits (888), Expect = 1.279e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 
Query:    1 MGSAYYDAEAGRYVLLGYAILITFAGTLAWVKARSRIEVMSAVVSFICLFVAFGISWTYPIVAFAIAAIVAANVAINDALRLQASRQIFPTGITLVISVGSFVFFCILAANAPTIQFSRGGVDNSHLGTKPFVALKGSSVLWENLSPVFLRGQDSPFLPLREETGRLSLRPRG 173
            MGSAYYDAEAGRYVLLGYAILITFAGTLAWVKARSRIEVMSAVVSFICLFVAFGISWTYPIVAFAIAAIVAANVAINDALRLQASRQIFPTGITLVISVGSFVFFCILAANAPTIQFSRGGVDNSHLGTKPFVALKGSSVLWENLSPVFLRGQDSPFLPLREETGRLSLRPRG
Sbjct:    1 MGSAYYDAEAGRYVLLGYAILITFAGTLAWVKARSRIEVMSAVVSFICLFVAFGISWTYPIVAFAIAAIVAANVAINDALRLQASRQIFPTGITLVISVGSFVFFCILAANAPTIQFSRGGVDNSHLGTKPFVALKGSSVLWENLSPVFLRGQDSPFLPLREETGRLSLRPRG 173
The following BLAST results are available for this feature:
BLAST of EWM22176.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102603|gb|EWM22176.1|1.279e-120100.00Uncharacterized protein family UPF0136, Transmembr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8526rna8526Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications