rna8526, rna8526 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8526
Unique Name	rna8526
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3883
Alignment location	KK037249.1:170136..171206 -

Link to JBrowse

Properties


Property Name	Value
Product	Uncharacterized protein family UPF0136, Transmembrane
Orig transcript id	gnl\|cribi\|Naga_100153g9.4150.mrna
Orig protein id	gnl\|cribi\|Naga_100153g9.4150
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:170136..171206 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100153g9	gene8264	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8526	rna8526-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22176.1	cds8499	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:170136..171206-
coding sequence from alignment at KK037249.1:170136..171206-

mRNA sequence

>rna8526 ID=rna8526|Name=rna8526|organism=Nannochloropsis gaditana|type=mRNA|length=3883bp
TCAGGGCGGCTTACTGCATGTACTCTGAAGTCACTCTTCGTGTGTGCGGG
CTAGGATCTGCCGAAGTACGGTGGATAAGTATCATTGTACATCCCCAAAA
ACTCCTCCTTTATGTTTGTTTCCTCATGACATATGTGCTCATACAAAAAG
GTACAGGGGCCTTATATAAGGTTTTATTCGAATAACAAGATCCCTGGCAG
TCGTACACATTCAACGAGGAATCATTCCGTTCCTCGATTGATCAGCCATT
TTATGCGGCCAACGGCGCCACCACGCAAGCATGGGTTAATTGCTAGTGTT
TTCATCCTAGTTTTGGGTTTAGGTGCGACGCAGGCTCAGGCGGTAGCCGG
CTATGCGCTCCGCATAAGTGGTAAAAAATGGGACGACACAGCAAAGGCCA
TGGCGGTGGACAAAGTGGGGAATGCCTACGTAGTGGGAGATTTTCATGCG
GAATCTATTCAAATTGGTAATATGACTTTCAAAAATCAAGGCAAAACCGG
CCAATCGGCCGACCCCTCCGCGGACAGTTTCCTCGCAAAAATCGATTCGT
CGGGAGACTTGGAGTGGGCATTCGTCTTTGGGGGCGATATGGACGATGTC
GTACAGGACGTGGTGGTGGATCCAGATGGTGGCAACGTGTTTCTTACAGG
CACCTTCCAGTCGGAGGTGCTTACCTTTGGCGACGCAGGCCCCCCGGTGT
ACAACTTGATCTACGGCCTTGCTGACGAACCCGAATACAACACATACTTG
ATGCGCGTAGATGCTGAAGGTACGGTCATTTGGGTCACACAGACGGGGGA
CAGCGATGTTGGTAGCATAGTAGTTGATGCTGCCCGTGATTGCCTGTTTT
TAAGTGGTAGCTTTCCGGGTGAACCACCGGTATCGGAAGAGAACGAGTCC
AACTTTGGGTCGAAGTTCTCGGCAGGGCTCGAGGATGACGACACTGATGA
TGGCAGAGGGAGCGGGGAACTGATGGGCAAGAAAAAAGGGGGTGATGGAT
TGTTCAAGAAAGGCTCCTTGGATATTTATGTGGATCACTATTCCTATCGC
ACGGGCGATTTGATGTCGGGCGTTACGTTCACTGGGGATCGAGACGACGT
CAATACGGACATGGCCATTCTACCCAAATCCTCGGCGCTCCTGATCACGG
GATACTTCTACTCCGACGTCCTTACCCTCGACGAGATGTCCGTCCTTCGG
AGCGAAAATCCGAACAAGCGGCGGGCGGATCCCACTGGTTTCCTCGCACG
CCTGGACAGTATTTATGGGCATGTCATGTGGGGCCAGGAGGTCGGAGAGA
TTGCATCATCTCCGCCCTTACAAGTAGCCGCGGATGAAGCGAGTGAGTCC
TTGTTTATCACGGGAAATTTCTTGGGTCGCAGCATTTTGGCGCGCAGCGA
CGGAAAGTCGGCGGGTTTGATCAGCCTGAGTCTTAAAACTGGAAGCATCC
AATGGGTGAAAGCAGTCCCGGCGCCCGCGTCGATCGTCGTGGACTATTTG
GGCTTCTTGTACATCTCTGGGACGACAACAAAGGACACACCTTTCGGTGC
AAACGGAGGGCTGATCTCAATTGGTTCCGATGCCGGTGATATCTACGTGG
CGCGCCTGCAAGCAGAGGATGGCACCATCCTCTTTGATCGTTCCTTCGGA
GGTGAAGGAAAGCGGGGCGCATACTCCGTCGCGACCGTTGGGGTGGACGC
AGAAAACAATGTCTATCTTGCTGGTAATTACAGCAAAGGAAGCTTGGTCT
TGGGAGGACAGGCCCTGGACTCCCCGGGAACGGATGTGGATGGCTTTGTG
GGCCGCGCCGTAATGGGATCAGAGGCTCCAGTGTCCACACTCGCCGGACC
CAATCAGCCTGCGACTGCCCAGAGAACGAAGAAGCGAAAGAAAATTTTTG
GGAAGTCAACCTCCACCAAGGCTTCGTCCAAGAATAGTGGGTGGTTTTCG
GGGAACCTGTTCTCGCCGAGTTCGGATTCAGCCTCTTCCGCTGCTGCGCC
GTTGCCTCCCACTCCGCAGGAGACGTCCTACGACCCCGATAGCCCCTCAA
GCCCATCAAGCTCCTCTCCCAAGGCGACCGACACGAATGTCGCGCGTCCC
TCCGCCACGACCCCAGCACAGAGTCTTCCCCCGACCTCAGGGCCGGTAGC
CTCTCCCGCGGACAATCCTATGCCCGAATCTGAAACCAGTCGAACCCCTG
TCCGGATCCCCACCCATGCCCCCACGGGACGCCCTCCACGCTTCCGACTC
ACCTGGGCCCCAACTCCCAGCCGCCCCCTGGGCCAAGACCCTCTGTATGG
TTCCAGCGAGACTGCTACCTACTCGGACGTCACCGCCACGACCGGAAGCC
AGGCGGCCATCTACCCCTTGCCACCAGGCACGACCAACGACGACGCCGCT
CTCCTCTCCCTTTTGGGCAGGGGCAAGGTGGCCTCAGGCGGGGACGACGT
CCTGCGAGGCTGGGACGTGGACATGGTCTATGCGGGCCCGACCACGGACG
TCTCGGCCTTGCAGACCGCCACCTACAACGTAGTGAAGCCGTATGTCACG
TCCTTTGTCAGCCTCCCTGTCAGTCGTCTGGGCAGCGATCGGCGGCGCCG
TGTCCTCTTGAATCAGCGTGTACTCCCCGATGATGCCTGTGCCAACCCCG
AGGCCCCCAAAATCCACCTTCGTTTCGCCTTGCAATGCTCCTCCGATGCG
GATGCCGCACACGTGCAAGACAGCTTGGCCCAGGTGGCCAGGGGCAACCT
CACACTCCGCTCCGGCCGGCGAACCATCCCGTCCAGCTTGATCTGTAGCT
TGAACGTGACCTCTGCGCCGGTGCCCACTCCCAGCCCCACCGCGAGTCCT
CAAGAGATGGTCCCCAAAGAGAGTCCTAGAGCGAAGCCCTCCAACTCCAC
CACCCTTATCCTCAAGGACGGGTCGAAGAAGGAGCCTCAGACTAAGGACC
CACCGAGCAAGAACGTGTTGGGTATAAGTCTTGTGGTATGCCTCCTGGGC
TTGGTGGCTTTGATGGGGGTAATGGGGTACCGTCAATACAAGAGGGATCG
CGTGATCCGGGCAGAGAACGACCGGCGAGATATGGAATGGCTGCGGGCAC
GCAAGGAGCAGGCCAGACAGGACGGGAAGGAGCTTCCCGAAGACCGGAAG
GCCACGCCAGAGACAAGAGGGACGCCAGTCTCTGAGAGACAGCTGCCGGT
CTCCTTGACCCTGGAGGAGCTATCGTTGGAGAGGGAGGAGGAAGGGGGGC
CTTGAGGAGGGGGGGAATTGTAGGGGGATGTCTACCTTGTGCCTGACGTC
CCGCGGGGTCTGGCTCTCACGGAAAAAGAGCAAGCCGGTGCAGCGCCGTC
TCTTTTCACGGAAGATTGCCTGGACTACCACCAATTTCCCACAGCACGGG
TAGCGCGGAAGTGTACATGAACTCGACTGTGACGTTCTCGGAAGGTGGTC
TTTGGAACCCGGTCTCGAACTCACGGGAATAATTAATTAAGTAAATAAGC
ATGCGGCAGACCCGAAAGCACGAAGTGCTCGGTAAATCAGTATGTGTACG
CTTCGGCAATGGTTGAGAAAATATTTTCTTGAAAGTCAAAGTGGCATGCT
TGCGTCGTCTGTTCGGTTATTTTTCGGAAATCGGAAGCTAGGCAGAGTAC
AGGATACGTTTTTACATGCTAAGTTCATCTTCACATCATTTTATATATTT
TTCAGCCCCTCGGTCTCAAAGACAATCGGCCCGTTTCCTCACGCAGTGGC
AGAAACGGGCTGTCTTGGCCTCTCAGAAAAACAGGTGACAGATTCTCCCA
CAGGACAGAACTGCCTTTCAAGGCCACAAATGGCTTAGTACCCAAATGAC
TGTTGTCAACTCCTCCTCGTGAGAATTGTATTG

protein sequence of rna8526

>rna8526-protein ID=rna8526-protein|Name=rna8526|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MGSAYYDAEAGRYVLLGYAILITFAGTLAWVKARSRIEVMSAVVSFICLF
VAFGISWTYPIVAFAIAAIVAANVAINDALRLQASRQIFPTGITLVISVG
SFVFFCILAANAPTIQFSRGGVDNSHLGTKPFVALKGSSVLWENLSPVFL
RGQDSPFLPLREETGRLSLRPRG

mRNA from alignment at KK037249.1:170136..171206-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8526 ID=rna8526|Name=rna8526|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp|location=Sequence derived from alignment at KK037249.1:170136..171206- (Nannochloropsis gaditana)
CACAGACAATAAAGCCATGGGGTCCGCGTATTACGATGCAGAGGCCGGTC
GCTACGTGCTGCTGGGGTACGCAATACTCATCACGTTTGCCGGTACTCTG
GGTAAGTCTATTTGTTCCTCGTATTATCCTTATTTCTTTTTTTTTGAGGG
GAAATTTGCCTGCGATACGTTTCTTAAATCGGCATGTAAGTATCAAAAAC
TGCATTGACACGAGTGTACTTGATCACGATAAAGCTTAATCACGGATTTT
GCTACCCAAAGCTATAGGGGAGGTTTGTCGTTTTTTGCGTTATGTGTCCA
TGCCCGACGAAATCTGTGATATCATAATAACATGTCAAATGAATTTTTGA
TTCTGATCCTTTCCTTGGTGCCAACTTCCACATTTACAACAATTCATATC
GCCCGATCGTTGGTTCTCCTCTCGGTGTAGCTTGGGTGAAGGCTCGTTCT
CGCATCGAGGTGATGTCGGCCGTTGTCAGCTTTATTTGCTTATTTGTAGC
TTTTGGAATCTCTTGGACGTACCCTATCGTCGCCTTCGCAATCGCAGCAA
TTGTTGCCGCCAATGTGGCCATCAATGACGCCTTGCGTTTGCAAGCGTCG
CGACAGATATTCCCTACAGGGATCACCCTAGTCATCTCTGTGGGTAGCTT
TGTCTTCTTTTGTATTTTGGCGGCAAATGCGCCTACAATACAATTCTCAC
GAGGAGGAGTTGACAACAGTCATTTGGGTACTAAGCCATTTGTGGCCTTG
AAAGGCAGTTCTGTCCTGTGGGAGAATCTGTCACCTGTTTTTCTGAGAGG
CCAAGACAGCCCGTTTCTGCCACTGCGTGAGGAAACGGGCCGATTGTCTT
TGAGACCGAGGGGCTGAAAAATATATAAAATGATGTGAAGATGAACTTAG
CATGTAAAAACGTATCCTGTACTCTGCCTAGCTTCCGATTTCCGAAAAAT
AACCGAACAGACGACGCAAGCATGCCACTTTGACTTTCAAGAAAATATTT
TCTCAACCATTGCCGAAGCGTACACATACTGATTTACCGAGCACTTCGTG
CTTTCGGGTCTGCCGCATGCT

Coding sequence (CDS) from alignment at KK037249.1:170136..171206-

>rna8526 ID=rna8526|Name=rna8526|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at KK037249.1:170136..171206- (Nannochloropsis gaditana)
CTTGGGTGAAGGCTCGTTCTCGCATCGAGGTGATGTCGGCCGTTGTCAGC
TTTATTTGCTTATTTGTAGCTTTTGGAATCTCTTGGACGTACCCTATCGT
CGCCTTCGCAATCGCAGCAATTGTTGCCGCCAATGTGGCCATCAATGACG
CCTTGCGTTTGCAAGCGTCGCGACAGATATTCCCTACAGGGATCACCCTA
GTCATCTCTGTGGGTAGCTTTGTCTTCTTTTGTATTTTGGCGGCAAATGC
GCCTACAATACAATTCTCACGAGGAGGAGTTGACAACAGTCATTTGGGTA
CTAAGCCATTTGTGGCCTTGAAAGGCAGTTCTGTCCTGTGGGAGAATCTG
TCACCTGTTTTTCTGAGAGGCCAAGACAGCCCGTTTCTGCCACTGCGTGA
GGAAACGGGCCGATTGTCTTTGAGACCGAGGGGCTGAATGGGGTCCGCGT
ATTACGATGCAGAGGCCGGTCGCTACGTGCTGCTGGGGTACGCAATACTC
ATCACGTTTGCCGGTACTCTGGCTTGGGTGAAGGCTCGTTCTCGCATCGA
GGTGATGTCGGCCGTTGTCAGCTTTATTTGCTTATTTGTAGCTTTTGGAA
TCTCTTGGACGTACCCTATCGTCGCCTTCGCAATCGCAGCAATTGTTGCC
GCCAATGTGGCCATCAATGACGCCTTGCGTTTGCAAGCGTCGCGACAGAT
ATTCCCTACAGGGATCACCCTAGTCATCTCTGTGGGTAGCTTTGTCTTCT
TTTGTATTTTGGCGGCAAATGCGCCTACAATACAATTCTCACGAGGAGGA
GTTGACAACAGTCATTTGGGTACTAAGCCATTTGTGGCCTTGAAAGGCAG
TTCTGTCCTGTGGGAGAATCTGTCACCTGTTTTTCTGAGAGGCCAAGACA
GCCCGTTTCTGCCACTGCGTGAGGAAACGGGCCGATTGTCTTTGAGACCG
AGGGGCTGAATGGGGTCCGCGTATTACGATGCAGAGGCCGGTCGCTACGT
GCTGCTGGGGTACGCAATACTCATCACGTTTGCCGGTACTCTGG

Synonyms

Publications