rna8513, rna8513 (mRNA) Nannochloropsis gaditana

Overview
Namerna8513
Unique Namerna8513
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length408
Alignment locationKK037249.1:133591..135447 -

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Properties
Property NameValue
Productsplicing factor 3 subunit
Orig transcript idgnl|cribi|Naga_100916g2.6969.mrna
Orig protein idgnl|cribi|Naga_100916g2.6969
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:133591..135447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100916g2gene8251Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8513rna8513-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22188.1cds8486Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8513 ID=rna8513|Name=rna8513|organism=Nannochloropsis gaditana|type=mRNA|length=408bp
GCAGGGCGTGGAGGGGCATTCAGAGGAAACGAGGCAGGGTTGGCGTAGAG
AAATACGAAGGAGGACGAGAAACATCCTGAAGGGTGTCGTACAGCGTCCA
CACGGGCCATGTCACCGCCTCCAAGTGTTCGCGCACAGGCAGGAAGGGGC
TTGTGGGACCGTGCTTTGTCAGGGAGGGTCAGGAGGGATGACGGAATAAA
TCATCAAAGCGTAGGTGGAGAAAAGATGACAGACGGGGCAGCGTGGGCCG
TTCAAGCTTGTCTAGGAAGCAACGAATATAATGGTATCCATGCCAGGTGT
TACCACAGTAAAATCCGAGGGGGGGGGAAAGGCAGTAGTTATGTAAATGT
GCTCCACGGTCGAACGTCGGTGGAGAAAAGAACGAAGAGAAAACTCGCCG
CTGCCTGA
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protein sequence of rna8513

>rna8513-protein ID=rna8513-protein|Name=rna8513|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCC
LASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPS
MCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACI
CSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQ
APTVNAIQDRS
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mRNA from alignment at KK037249.1:133591..135447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8513 ID=rna8513|Name=rna8513|organism=Nannochloropsis gaditana|type=mRNA|length=1857bp|location=Sequence derived from alignment at KK037249.1:133591..135447- (Nannochloropsis gaditana)
AGTCTTGGCGACGAATCAATCAGTCGGAGCAAATGCGCTGTATTAAAATA
CACTCACAACGTGCGCATGCCGCATCCATTCACACTGCACAGAGACGCCG
AGCAAAGGCTTTGAAGGGCTTCTGGACTTATTCGTGCCCGATGTCCATTT
GTTTCCTCTGTTTCCCGGACGATGTCATCGCGTAAGTACCTGTGTGATGT
TCTCTGGGGTTGTATGCTGCTTCTCGACAAGTCCGCGCGACGTAACCATC
ATACAGCCTAATGTCCTTTCCTGAAGCTTTCTTTGTAGTACCACTCCCTG
TATATGTAATTGATATTGTATCGACTTACAGCGGGTATCCGAGATCGGAC
AATCCCTACACCTTCAAGGTTCCAATGAGCAAAACGTGCATCGCGGATCC
ATGCTGCTGCCTTGCATCTCTCGTTTGTCCTCTCCCTGTGGCCTGTGTCA
ACCGGCACCGGGCATTGGAGGGGAACATGGACGAATATAAGTGCTGTCAG
GGGTAAGGAGGCGGGAGGTTATCTCGAGTCCAATCTGTCAACAAGCAAGC
TCAATGGCTTCACTTCATCCATGTCGAGTATGATTTCAGACAGATTTAGG
CTCTGTTACCGCATGCGATTTTTTATGTCTGTTGTCGCGTGTGATGGGGG
CTCGGGAGCGATCCTTTCCTACCCGAGATGAAGACACCTTTTGATTCCAG
TCAAGCCCTCCGCTAGCTGATACGAGTCGACGTGGATCCCCTGTATCTTT
CTCACAGCTTCTCGCGACCCTCGTGCATGCTTTCCGCACAGGTACTACCC
CCTGTGCGGGTTTCGCGCCGGGGAGGTGGGCGAGAGTACTTGTCCCTCTA
TGTGTCTGTGCCTGGAGGCCACCTGTTGCTTTACCTGCGCCGTCTCCGCC
ACCCGGAACTACTTGATGGACAAGTACCGCATTCACCCCGACCCTATGGA
CTACCAGATTAGTAAGTGCCTGTGCGTCTAAGTATAAAGTGGAGCCGATC
TGTCAAATCCCACTCCTGGGCGTTTTGAGGTCCCCCAGCGTCCTAAGGCC
ATGAAATGGGCCATGAGGGGAAAGGGTGCGGGAGTGTGGCGTGTCGATCG
TGTACGAACTTGGGGTTTCGGCTTTGTCGACATGTCGCCGTGAGCCAAGG
GTGGTCAGACGTGACGCATTCCATCCAGCGCGAGCCCCCCGACGCCCTCC
ACCAGTGAACCCTACGCGGTCTGTGTGGATATCCCACGTCCATGCGCCAA
CCTTCTCAATTCCACATGACGGTTTTCGCCTTTTTCAGTCAGGTGCAGCA
ACGCGATGCAGTGTCTGGCGTGCATCTGCTCGCTGGCCTCGATTTGCGTC
AAGGACCTTCGGGAAGGCGCGCGGATCCTCCGGCACGTGGCCCATATCAC
GTTCTGCACCGTCCAAGGCTGTATGCAGGTACGAGAATAAAGCGTCTTAC
TTTGCTGGGGCCCTTGTGTTGCGAGCATTTCTGTGCCTTTGCTGTTTTTT
CGGTGGGAGGGAATGGGCGTGGATACCACGGAGTTGCTGTTCCCAGGCAC
GTGTTGTTGCCGTTGTTCCTCGGACGAAACGGCTTTTTGGGTTTTTTCTT
CATTTAATGTGGGTGCGCACCACAGGTCCTTTTTCTTTCCTGAAAGAGCG
ACGGCCATATCCTCGAGGAGTTCAATCATTTTTCCTACTTCCCTTTTCCT
CACTCCCTCCCTCCCTCCCTCCTCCCCTCCGTCCACACAAGACGCAAAGC
GCCGTGGAGATTGCTTTTCAGGAGAAAAAAGGAGTGCAAGCACCCACAGT
TAACGCCATCCAAGACCGAAGCTGAATGAGAGAGGGAAAGCGGGATAGAG
AGACGGA
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Coding sequence (CDS) from alignment at KK037249.1:133591..135447-

>rna8513 ID=rna8513|Name=rna8513|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at KK037249.1:133591..135447- (Nannochloropsis gaditana)
ACGCAAAGCGCCGTGGAGATTGCTTTTCAGGAGAAAAAAGGAGTGCAAGC
ACCCACAGTTAACGCCATCCAAGACCGAAGCTGATCAGGTGCAGCAACGC
GATGCAGTGTCTGGCGTGCATCTGCTCGCTGGCCTCGATTTGCGTCAAGG
ACCTTCGGGAAGGCGCGCGGATCCTCCGGCACGTGGCCCATATCACGTTC
TGCACCGTCCAAGGCTGTATGCAGGTACTACCCCCTGTGCGGGTTTCGCG
CCGGGGAGGTGGGCGAGAGTACTTGTCCCTCTATGTGTCTGTGCCTGGAG
GCCACCTGTTGCTTTACCTGCGCCGTCTCCGCCACCCGGAACTACTTGAT
GGACAAGTACCGCATTCACCCCGACCCTATGGACTACCAGATTAATGTCC
TTTCCTGAAGCTTTCTTTGTAGTACCACTCCCTGTATATGTAATTGATAT
TGTATCGACTTACAGCGGGTATCCGAGATCGGACAATCCCTACACCTTCA
AGGTTCCAATGAGCAAAACGTGCATCGCGGATCCATGCTGCTGCCTTGCA
TCTCTCGTTTGTCCTCTCCCTGTGGCCTGTGTCAACCGGCACCGGGCATT
GGAGGGGAACATGGACGAATATAAGTGCTGTCAGGGACGCAAAGCGCCGT
GGAGATTGCTTTTCAGGAGAAAAAAGGAGTGCAAGCACCCACAGTTAACG
CCATCCAAGACCGAAGCTGATCAGGTGCAGCAACGCGATGCAGTGTCTGG
CGTGCATCTGCTCGCTGGCCTCGATTTGCGTCAAGGACCTTCGGGAAGGC
GCGCGGATCCTCCGGCACGTGGCCCATATCACGTTCTGCACCGTCCAAGG
CTGTATGCAGGTACTACCCCCTGTGCGGGTTTCGCGCCGGGGAGGTGGGC
GAGAGTACTTGTCCCTCTATGTGTCTGTGCCTGGAGGCCACCTGTTGCTT
TACCTGCGCCGTCTCCGCCACCCGGAACTACTTGATGGACAAGTACCGCA
TTCACCCCGACCCTATGGACTACCAGATTAATGTCCTTTCCTGAAGCTTT
CTTTGTAGTACCACTCCCTGTATATGTAATTGATATTGTATCGACTTACA
GCGGGTATCCGAGATCGGACAATCCCTACACCTTCAAGGTTCCAATGAGC
AAAACGTGCATCGCGGATCCATGCTGCTGCCTTGCATCTCTCGTTTGTCC
TCTCCCTGTGGCCTGTGTCAACCGGCACCGGGCATTGGAGGGGAACATGG
ACGAATATAAGTGCTGTCAGGGACGCAAAGCGCCGTGGAGATTGCTTTTC
AGGAGAAAAAAGGAGTGCAAGCACCCACAGTTAACGCCATCCAAGACCGA
AGCTGATCAGGTGCAGCAACGCGATGCAGTGTCTGGCGTGCATCTGCTCG
CTGGCCTCGATTTGCGTCAAGGACCTTCGGGAAGGCGCGCGGATCCTCCG
GCACGTGGCCCATATCACGTTCTGCACCGTCCAAGGCTGTATGCAGGTAC
TACCCCCTGTGCGGGTTTCGCGCCGGGGAGGTGGGCGAGAGTACTTGTCC
CTCTATGTGTCTGTGCCTGGAGGCCACCTGTTGCTTTACCTGCGCCGTCT
CCGCCACCCGGAACTACTTGATGGACAAGTACCGCATTCACCCCGACCCT
ATGGACTACCAGATTAATGTCCTTTCCTGAAGCTTTCTTTGTAGTACCAC
TCCCTGTATATGTAATTGATATTGTATCGACTTACAGCGGGTATCCGAGA
TCGGACAATCCCTACACCTTCAAGGTTCCAATGAGCAAAACGTGCATCGC
GGATCCATGCTGCTGCCTTGCATCTCTCGTTTGTCCTCTCCCTGTGGCCT
GTGTCAACCGGCACCGGGCATTGGAGGGGAACATGGACGAATATAAGTGC
TGTCAGGGACGCAAAGCGCCGTGGAGATTGCTTTTCAGGAGAAAAAAGGA
GTGCAAGCACCCACAGTTAACGCCATCCAAGACCGAAGCTGATCAGGTGC
AGCAACGCGATGCAGTGTCTGGCGTGCATCTGCTCGCTGGCCTCGATTTG
CGTCAAGGACCTTCGGGAAGGCGCGCGGATCCTCCGGCACGTGGCCCATA
TCACGTTCTGCACCGTCCAAGGCTGTATGCAGGTACTACCCCCTGTGCGG
GTTTCGCGCCGGGGAGGTGGGCGAGAGTACTTGTCCCTCTATGTGTCTGT
GCCTGGAGGCCACCTGTTGCTTTACCTGCGCCGTCTCCGCCACCCGGAAC
TACTTGATGGACAAGTACCGCATTCACCCCGACCCTATGGACTACCAGAT
TAATGTCCTTTCCTGAAGCTTTCTTTGTAGTACCACTCCCTGTATATGTA
ATTGATATTGTATCGACTTACAGCGGGTATCCGAGATCGGACAATCCCTA
CACCTTCAAGGTTCCAATGAGCAAAACGTGCATCGCGGATCCATGCTGCT
GCCTTGCATCTCTCGTTTGTCCTCTCCCTGTGGCCTGTGTCAACCGGCAC
CGGGCATTGGAGGGGAACATGGACGAATATAAGTGCTGTCAGGG
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Synonyms
Publications