EWM22188.1, cds8486 (CDS) Nannochloropsis gaditana

Overview
NameEWM22188.1
Unique Namecds8486
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:134946..135187 -
Alignment locationKK037249.1:134487..134656 -
Alignment locationKK037249.1:134020..134159 -
Alignment locationKK037249.1:133623..133706 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22188.1
Productsplicing factor 3 subunit
Orig transcript idgnl|cribi|Naga_100916g2.6969.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:134946..135187 -
KK037249.1supercontigKK037249.1:134487..134656 -
KK037249.1supercontigKK037249.1:134020..134159 -
KK037249.1supercontigKK037249.1:133623..133706 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|585102623|gb|EWM22188.1| (splicing factor 3 subunit [Nannochloropsis gaditana])

HSP 1 Score: 434.876 bits (1117), Expect = 2.770e-154
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDRS 211
            MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDRS
Sbjct:    1 MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDRS 211          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|301115148|ref|XP_002905303.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110092|gb|EEY68144.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 157.147 bits (396), Expect = 6.284e-45
Identity = 88/185 (47.57%), Postives = 114/185 (61.62%), Query Frame = 0
Query:   28 RSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGF----RAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKK-GVQAPTVNAI 207
            R DNP  F V M +   ADP CCL S +CP     + R +AL  +M  Y CCQGY    G     R+G  GES+CP+ CLCLEA CC  CAVSATR  +MD+YR+ PD  D +IIRC+N +Q  +CICSL SIC+ +L + A I+  +A  T+ T QGCM  Q  VE+  +EK   VQ  T++ +
Sbjct:   15 RKDNPGAFHVGMMQAPGADPMCCLGSCLCPCCAQIIIRRKALNYDMTNYTCCQGYMD--GIVPCARSGRCGESSCPNGCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELREREKAFEVQDETMDRV 197          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|675193831|ref|XP_008905800.1| (hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >gi|566023820|gb|ETI46731.1| hypothetical protein F443_08916 [Phytophthora parasitica P1569] >gi|567961108|gb|ETK86653.1| hypothetical protein L915_08749 [Phytophthora parasitica] >gi|568019056|gb|ETL93210.1| hypothetical protein L917_08580 [Phytophthora parasitica] >gi|568049503|gb|ETM46483.1| hypothetical protein L914_08628 [Phytophthora parasitica] >gi|568094457|gb|ETN09239.1| hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >gi|570327480|gb|ETO75428.1| hypothetical protein F444_08983 [Phytophthora parasitica P1976] >gi|570951267|gb|ETP16524.1| hypothetical protein F441_08892 [Phytophthora parasitica CJ01A1] >gi|570985243|gb|ETP44582.1| hypothetical protein F442_08857 [Phytophthora parasitica P10297] >gi|970634890|gb|KUF79950.1| hypothetical protein AM587_10007986 [Phytophthora nicotianae])

HSP 1 Score: 156.377 bits (394), Expect = 1.218e-44
Identity = 85/173 (49.13%), Postives = 108/173 (62.43%), Query Frame = 0
Query:   28 RSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGF----RAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEK 196
            R DNP  F V M +   ADP CCL S +CP     + R +AL  +M  Y CCQGY    G     R+G  GES+CP+ CLCLEA CC  CAVSATR  +MD+YR+ PD  D +IIRC+N +Q  +CICSL SIC+ +L + A I+  +A  T+ T QGCM  Q  VE+  +EK
Sbjct:   15 RKDNPGAFHVGMMQAPGADPLCCLGSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMD--GIVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELREREK 185          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|298711682|emb|CBJ32733.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 153.68 bits (387), Expect = 1.547e-43
Identity = 82/185 (44.32%), Postives = 114/185 (61.62%), Query Frame = 0
Query:   27 PRSDNPYTFKVP-MSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDR 210
            P   NP  F++  M   C   P  C   L C      + R RAL+GN++ Y CCQGYYP+C   AG+ GE +CP  CLCLE+ CC +CAVS++R YLMDK+ + PDP D +IIR +N +Q L+CIC++A+IC++++RE ARI+  +A + + T  GCM  Q   E+ +Q      AP   AI  R
Sbjct:   20 PFYGNPNQFQIGLMEAPCKNCPWFCFGCL-CTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQASV---APKAQAIAGR 200          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|695392794|ref|XP_009520435.1| (hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae] >gi|348685332|gb|EGZ25147.1| hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae])

HSP 1 Score: 151.754 bits (382), Expect = 8.851e-43
Identity = 89/188 (47.34%), Postives = 112/188 (59.57%), Query Frame = 0
Query:   24 SGYP-----RSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGF----RAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAP 202
            SG P     R  NP  F V M +   ADP CCL S +CP     V R +AL  +M  Y CCQGY    G     R+G  GES+CP+ CLCLEA  C  CAVSATR  +MD+YR+ PD  D +IIRC+N +Q  +CICSL SIC+ +L + A I+  +A  T+ T QGCM  Q  VE+  +E KG + P
Sbjct:    6 SGEPVEDDVRKGNPGAFHVGMMQAPSADPLCCLGSCLCPCCAQIVIRRKALNYDMSNYTCCQGYMD--GIVPCARSGRCGESSCPNCCLCLEAFFCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELRERE-KGFEVP 190          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|676380203|ref|XP_009033380.1| (hypothetical protein AURANDRAFT_69639 [Aureococcus anophagefferens] >gi|323456463|gb|EGB12330.1| hypothetical protein AURANDRAFT_69639 [Aureococcus anophagefferens])

HSP 1 Score: 144.821 bits (364), Expect = 3.246e-39
Identity = 83/183 (45.36%), Postives = 103/183 (56.28%), Query Frame = 0
Query:   21 STYSGYPRSDNPYTFKVPMSKTCIADP-CCCLASLVCPLPVA-CVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQA 201
            S +    R      FK  M      DP  CC   L C LP   C  RH+ALEGNMD Y CCQGYY  C F+AG +G+   P  CL LE  CC +C++S+TR Y+MDKY +  DP D +IIR +N +Q LACIC LA++     R+ A IL  +A I F T  GCM  Q   E+  +EK G  A
Sbjct:    9 SPHENDARGGRQNMFKTGMQDAPCKDPLACCCGGLPCFLPFTNCYMRHKALEGNMDAYVCCQGYYDRCCFKAGSIGDQGNPC-CLALEGFCCLSCSLSSTRMYVMDKYDLQSDPCDRRIIRFNNCVQMLACICHLAAMFDPSFRDLANILDLIADIVFYTTAGCMHAQVHYELTEREKSGTLA 190          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|298711681|emb|CBJ32732.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.354 bits (355), Expect = 7.481e-39
Identity = 72/155 (46.45%), Postives = 102/155 (65.81%), Query Frame = 0
Query:   30 DNPYTFKVPMSKT-CIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCM 183
            +NP  F++ M +  C   P C    L C      + R RAL+GN+  Y CCQGY+P+C F  G+ GE  CP  CLC+E+  C +CAVS++R YLMDK+ + PDP D +IIR +NA+Q L+CIC +A+ICV+++RE ARI+  +A + + T  GCM
Sbjct:   23 ENPNKFQIGMMEAPCKNCPWCTFGCL-CMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCM 176          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|551643637|ref|XP_005824612.1| (hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712] >gi|428168690|gb|EKX37632.1| hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712])

HSP 1 Score: 140.969 bits (354), Expect = 1.781e-38
Identity = 70/167 (41.92%), Postives = 102/167 (61.08%), Query Frame = 0
Query:   25 GYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEI 191
            G PR+     +   M     A+P CCLA L+CP P AC  R +AL+ +M  YKCCQGYY  C F+AG  GES+CP +C  LEA  CF+C++S+TR  +MD   I PDP D ++I  +N +Q L+CIC++ ++ +++L   A ++  +A + F  V  CM  Q   E+
Sbjct:   12 GDPRALYANEWNTGMCNAPCANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|551643639|ref|XP_005824613.1| (hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712] >gi|428168691|gb|EKX37633.1| hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712])

HSP 1 Score: 140.584 bits (353), Expect = 2.816e-38
Identity = 70/167 (41.92%), Postives = 102/167 (61.08%), Query Frame = 0
Query:   25 GYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEI 191
            G PR+     +   M     A+P CCLA L+CP P AC  R +AL+ +M  YKCCQGYY  C F+AG  GES+CP +C  LEA  CF+C++S+TR  +MD   I PDP D ++I  +N +Q L+CIC++ ++ +++L   A ++  +A + F  V  CM  Q   E+
Sbjct:   12 GDPRALYANEWNTGMCGAPCANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178          
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|635368969|emb|CCI42872.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 137.887 bits (346), Expect = 2.268e-37
Identity = 80/192 (41.67%), Postives = 110/192 (57.29%), Query Frame = 0
Query:   21 STYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYP--LCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDR 210
            S   G  R  N   F V M     + PCCCLAS  CP     + R +AL+ +M +Y C QGY    +   R+G+ GE +CP  CLCLE+  C  CAVSATR  +MD+Y + PD  D +IIRC+N +Q L+C+CS  +IC+ +L   A +L   A  T+ T QGCM  Q  VE+  + +K  +A  V+ + DR
Sbjct:    8 SPVDGDVRGQNSNEFMVGMMSAPCSSPCCCLASCFCPCCAQYIIRRKALDNDMSKYVCFQGYLDGVIPCLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKWDNRIIRCNNCIQLLSCVCSCLAICISELGNCADLLNCFAQCTYMTTQGCMTAQVNVEL--KRRKNYRA-AVDEVMDR 196          
The following BLAST results are available for this feature:
BLAST of EWM22188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102623|gb|EWM22188.1|2.770e-154100.00splicing factor 3 subunit [Nannochloropsis gaditan... [more]
gi|301115148|ref|XP_002905303.1|6.284e-4547.57conserved hypothetical protein [Phytophthora infes... [more]
gi|675193831|ref|XP_008905800.1|1.218e-4449.13hypothetical protein PPTG_11239 [Phytophthora para... [more]
gi|298711682|emb|CBJ32733.1|1.547e-4344.32conserved unknown protein [Ectocarpus siliculosus][more]
gi|695392794|ref|XP_009520435.1|8.851e-4347.34hypothetical protein PHYSODRAFT_350080 [Phytophtho... [more]
gi|676380203|ref|XP_009033380.1|3.246e-3945.36hypothetical protein AURANDRAFT_69639 [Aureococcus... [more]
gi|298711681|emb|CBJ32732.1|7.481e-3946.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|551643637|ref|XP_005824612.1|1.781e-3841.92hypothetical protein GUITHDRAFT_165451 [Guillardia... [more]
gi|551643639|ref|XP_005824613.1|2.816e-3841.92hypothetical protein GUITHDRAFT_116269 [Guillardia... [more]
gi|635368969|emb|CCI42872.1|2.268e-3741.67unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8513rna8513Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications