rna8500, rna8500 (mRNA) Nannochloropsis gaditana

Overview
Namerna8500
Unique Namerna8500
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1247
Alignment locationKK037249.1:112526..113010 -

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Properties
Property NameValue
ProductTransferase
Orig transcript idgnl|cribi|Naga_100621g4.6225.mrna
Orig protein idgnl|cribi|Naga_100621g4.6225
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:112526..113010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100621g4gene8239Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8500rna8500-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22196.1cds8473Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8500 ID=rna8500|Name=rna8500|organism=Nannochloropsis gaditana|type=mRNA|length=1247bp
TTGCCTTTCAACAGACGGACTTGGTTCAGGGGAAGCCTCTTCTTTTGTGG
GACGACGTTTCTGGCTTCCAGCCCGGGGGCATGGGCTTTGGACTATGTGG
CGTGACCGCGACGAGGGGAGACTTCTACCTCGATCCCTTTCCCGGTAAGC
GCCATCCTCCCTCTTGAGGCTTTCCCATAAGCGTGGGAGGACGGGGACGG
TCTGCCTACCTTGGAGGAAGGCACAGGAGGCCTCCGAGGGGGGAAGGGTA
CCTGGGCGCTTGGAACAGACGTCGAGGAGAGAGGGCCTGCGTGTATGTGT
AGAAACGGCTGTTCGACAAAGAAGGGGCAGCAACCCTATCATGTGGTACC
TTCTTGGATGCTGCAATACGAGCACTTCTCCAGCCACCCCCGCGGCGTCA
TTTCCCCCCGCCATGTAGACTGGAGAGCCTCACAGATTCCGGGTATCCTT
TTCCCCACGCTTTCTCATACACCAGGGATTGCCTTGGTCATGCCCACGGC
CCCGGGCGCGGATGGCCTGGCTGGGAAGGAAGTGTGCGTGTGCATGCACA
AAGCCAGCGTGGCCAAGGCTTTGATGCCGGAGATGCAGGCGCGCATCCAT
AAATTCGCTCCCGCGGCGGACACGACAAAGAAGGGGAGCAACACAGCGGA
AGAGATGAAAGATGCGTGTGTATGAAAATGGGCGAGGGGCGGGGAGGCAA
CGATACAGTGGAAACAGTATTTTCCCCTTTATACATACATATCGACATCG
GTGCCCGAGTTGGGTCGCGGATTGAGGGCGGGAGACGAGGTTGGGGCGCT
AAAGGAGAGGGTGCGGGCACAAAAGCGTCGGAGGAGGAAAGAACCAAGCA
TAGCAAACTGCCTGCGAAACGATGTCTGTGAATCCAGCACGATAGCCCCG
AGGTACGGGCGAATGCATTGAAGCATGGGGCGGGTGGCATGTGAGCAAGC
AGATTGTCCTGGGGAGGGATCTCGTGGCTGAGCGCGCCTCGACGATCCCA
CGGGCATCGACACGATGAGCACTGCGTGTCTTACACCATTTGGCTCGATT
GTCAACGCCGAGCCACAGACAGAGGAGAGGGGCAGTAGGTCGCGCTAGGT
GCTTCGGGTATGCGTGGGATGCGAGTGACTTGCCCTCCCAACTTTGTGGG
TGGAATCCTCGCATCTGCCTGACGCTCCAGACTGGTAACTCTCCGCGAAA
GCCAAGAAAAAAACAAAGTGTGCAAAATCACCAATCGCTTGCTCAAA
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protein sequence of rna8500

>rna8500-protein ID=rna8500-protein|Name=rna8500|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MTVNIKVIKDSYVRPTTPPATSAGSSPPRVELAGVDVLFNRMNLRVVYFF
PAPLSPHVLRSSLSKVLDKYPILGGRQRKEGKKTHYIELNGKGVLVRQQL
ATVKGGDKGKGGGGRDG
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mRNA from alignment at KK037249.1:112526..113010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8500 ID=rna8500|Name=rna8500|organism=Nannochloropsis gaditana|type=mRNA|length=485bp|location=Sequence derived from alignment at KK037249.1:112526..113010- (Nannochloropsis gaditana)
ATGACGGTTAATATCAAGGTCATTAAGGATAGCTATGTGCGCCCTACGAC
CCCCCCGGCCACTTCCGCCGGCTCGTCTCCTCCACGCGTCGAGCTTGCTG
GAGTCGATGTTCTCTTTAACCGCATGAATCTCCGCGTGGTCTACTTCTTC
CCTGCTCCCCTTTCCCCTCACGTCCTCCGCTCTTCTCTCTCCAAAGTCCT
GGACAAGTACCCCATTCTGGGGGGGCGCCAACGAAAGGAGGGAAAGAAGA
CGCACTACATCGAATTGAACGGGAAAGGGGTCTTGGTCCGGCAACAATTG
GCTACCGTGAAAGGCGGGGACAAGGGGAAAGGTGCCCTTTTGGACGACGA
GTTCATCAAAACTCACATCCATTCCTTCGTGCATGGAAATAAATCTGCCG
CCGTGAACCAAGACCGAGAGAGCAACCTCATCATCACCCTCACCGAAGTT
GACTATGAGCAGGAGGAGGAGGCAGGGATGGGTGA
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Coding sequence (CDS) from alignment at KK037249.1:112526..113010-

>rna8500 ID=rna8500|Name=rna8500|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at KK037249.1:112526..113010- (Nannochloropsis gaditana)
GAGGAGGAGGCAGGGATGGGTGAATGACGGTTAATATCAAGGTCATTAAG
GATAGCTATGTGCGCCCTACGACCCCCCCGGCCACTTCCGCCGGCTCGTC
TCCTCCACGCGTCGAGCTTGCTGGAGTCGATGTTCTCTTTAACCGCATGA
ATCTCCGCGTGGTCTACTTCTTCCCTGCTCCCCTTTCCCCTCACGTCCTC
CGCTCTTCTCTCTCCAAAGTCCTGGACAAGTACCCCATTCTGGGGGGGCG
CCAACGAAAGGAGGGAAAGAAGACGCACTACATCGAATTGAACGGGAAAG
GGGTCTTGGTCCGGCAACAATTGGCTACCGTGAAAGGCGGGGACAAGGGG
AAAGGAGGAGGAGGCAGGGATGGGTGAATGACGGTTAATATCAAGGTCAT
TAAGGATAGCTATGTGCGCCCTACGACCCCCCCGGCCACTTCCGCCGGCT
CGTCTCCTCCACGCGTCGAGCTTGCTGGAGTCGATGTTCTCTTTAACCGC
ATGAATCTCCGCGTGGTCTACTTCTTCCCTGCTCCCCTTTCCCCTCACGT
CCTCCGCTCTTCTCTCTCCAAAGTCCTGGACAAGTACCCCATTCTGGGGG
GGCGCCAACGAAAGGAGGGAAAGAAGACGCACTACATCGAATTGAACGGG
AAAGGGGTCTTGGTCCGGCAACAATTGGCTACCGTGAAAGGCGGGGACAA
GGGGAAAG
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Synonyms
Publications