EWM22269.1, cds8407 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|585102730|gb|EWM22269.1| (50s ribosomal protein l17 [Nannochloropsis gaditana]) HSP 1 Score: 434.876 bits (1117), Expect = 2.740e-154 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV
Sbjct: 1 MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|397641452|gb|EJK74655.1| (hypothetical protein THAOC_03655 [Thalassiosira oceanica]) HSP 1 Score: 195.667 bits (496), Expect = 1.577e-59 Identity = 94/120 (78.33%), Postives = 105/120 (87.50%), Query Frame = 0
Query: 93 SMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
S++MMRH KR KLGK ADQRKALLRALTTE IRHGRIKTT +RAKAVRK+VD M+ L KRGDLHARRQALGW+YDKDLV ALFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV
Sbjct: 115 SLEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1210531136|dbj|GAX10237.1| (large subunit ribosomal protein L17 [Fistulifera solaris]) HSP 1 Score: 192.586 bits (488), Expect = 3.183e-59 Identity = 101/156 (64.74%), Postives = 118/156 (75.64%), Query Frame = 0
Query: 61 FMLPSPLPLRAGASSRV----LSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
++ S L G S+ V ++ S GRS+ ++MMRH K FK LGK ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV
Sbjct: 19 YLFSSSLATVTGGSAFVGQALVTSPSASVHTGRSE--LNMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 172
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1072233984|gb|OEU18714.1| (50S ribosomal protein L17 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 190.66 bits (483), Expect = 1.400e-58 Identity = 96/145 (66.21%), Postives = 112/145 (77.24%), Query Frame = 0
Query: 68 PLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
P + R +S+ E +S S++M+ H K F KLGK ADQRKALLRALTTE IRHGRIKTTL+RA+AVRK+VD MI L KRGDLHARRQAL WMYDK LV +LF+ A DRYG+R GGYCRVLRT+ R+GDNA MAI+ELV
Sbjct: 18 PSSGSFAGRSVSLTEAQ----KSTSSLNMISHRKGFNKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQALAWMYDKQLVHSLFDAAPDRYGDRNGGYCRVLRTVARQGDNAKMAIIELV 158
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|224009071|ref|XP_002293494.1| (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335] >gi|220970894|gb|EED89230.1| RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 187.578 bits (475), Expect = 5.314e-58 Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0
Query: 97 MRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
MRH K+ KLGK ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDKDLV +LFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV
Sbjct: 1 MRHRKKLPKLGKPADQRKALLRALTTEIIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1210518812|dbj|GAX22358.1| (large subunit ribosomal protein L17 [Fistulifera solaris]) HSP 1 Score: 184.882 bits (468), Expect = 7.393e-57 Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
Query: 96 MMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
MMRH K FK LGK ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV
Sbjct: 1 MMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 117
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|57335953|emb|CAH25378.1| (50S ribosomal protein L17 [Guillardia theta]) HSP 1 Score: 185.267 bits (469), Expect = 1.947e-56 Identity = 90/120 (75.00%), Postives = 99/120 (82.50%), Query Frame = 0
Query: 93 SMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
S++MMRHGKR KLG DQRKALLR+LTTE IRHGRI TTL RAKAVR VDKMI L+K G L ARRQA+GWMYDK LV ALFEQA +RY ER GGYCRVL+TLPRKGDN+ M I+ELV
Sbjct: 37 SLEMMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|219110851|ref|XP_002177177.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411712|gb|EEC51640.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 182.57 bits (462), Expect = 5.835e-56 Identity = 91/116 (78.45%), Postives = 100/116 (86.21%), Query Frame = 0
Query: 97 MRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
MRH FKKL K ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAI+ELV
Sbjct: 1 MRHRHGFKKLSKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAIIELV 116
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1189391616|gb|OSX78545.1| (hypothetical protein BU14_0106s0011 [Porphyra umbilicalis]) HSP 1 Score: 180.644 bits (457), Expect = 1.868e-54 Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 0
Query: 94 MDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
++ MRH K+ KLGK ADQRKAL+R+LTTE IRHGRI TTL+RA+AVRK+VD MIGL+K G LH+RRQALG+++DK LV +LFE A +RYGER GGYCRVLRT+PR+GDNA MAI+ELV
Sbjct: 58 IEAMRHRKKVDKLGKPADQRKALMRSLTTEVIRHGRITTTLVRARAVRKHVDAMIGLAKDGSLHSRRQALGYIFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|298714012|emb|CBJ27244.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 174.866 bits (442), Expect = 4.705e-52 Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 0
Query: 91 KGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
+ ++ MMRH K FKKL ADQRKALLR LTT+ IRHGRI TT++RAKAVRK+VD MI LSK G LHARRQA+G++YDK LV ALFE +RYGER GGY R++RT PRKGDNA MAI+ELV
Sbjct: 60 RSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181 The following BLAST results are available for this feature:
BLAST of EWM22269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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