EWM22269.1, cds8407 (CDS) Nannochloropsis gaditana

Overview
NameEWM22269.1
Unique Namecds8407
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:672742..673111 -
Alignment locationKK037248.1:672325..672488 -
Alignment locationKK037248.1:671887..671991 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22269.1
Product50s ribosomal protein l17
Orig transcript idgnl|cribi|Naga_100504g2.6934.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:672742..673111 -
KK037248.1supercontigKK037248.1:672325..672488 -
KK037248.1supercontigKK037248.1:671887..671991 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_L17
Homology
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|585102730|gb|EWM22269.1| (50s ribosomal protein l17 [Nannochloropsis gaditana])

HSP 1 Score: 434.876 bits (1117), Expect = 2.740e-154
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV
Sbjct:    1 MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|397641452|gb|EJK74655.1| (hypothetical protein THAOC_03655 [Thalassiosira oceanica])

HSP 1 Score: 195.667 bits (496), Expect = 1.577e-59
Identity = 94/120 (78.33%), Postives = 105/120 (87.50%), Query Frame = 0
Query:   93 SMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            S++MMRH KR  KLGK ADQRKALLRALTTE IRHGRIKTT +RAKAVRK+VD M+ L KRGDLHARRQALGW+YDKDLV ALFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV
Sbjct:  115 SLEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1210531136|dbj|GAX10237.1| (large subunit ribosomal protein L17 [Fistulifera solaris])

HSP 1 Score: 192.586 bits (488), Expect = 3.183e-59
Identity = 101/156 (64.74%), Postives = 118/156 (75.64%), Query Frame = 0
Query:   61 FMLPSPLPLRAGASSRV----LSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            ++  S L    G S+ V    ++    S   GRS+  ++MMRH K FK LGK ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV
Sbjct:   19 YLFSSSLATVTGGSAFVGQALVTSPSASVHTGRSE--LNMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 172          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1072233984|gb|OEU18714.1| (50S ribosomal protein L17 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 190.66 bits (483), Expect = 1.400e-58
Identity = 96/145 (66.21%), Postives = 112/145 (77.24%), Query Frame = 0
Query:   68 PLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            P     + R +S+ E      +S  S++M+ H K F KLGK ADQRKALLRALTTE IRHGRIKTTL+RA+AVRK+VD MI L KRGDLHARRQAL WMYDK LV +LF+ A DRYG+R GGYCRVLRT+ R+GDNA MAI+ELV
Sbjct:   18 PSSGSFAGRSVSLTEAQ----KSTSSLNMISHRKGFNKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQALAWMYDKQLVHSLFDAAPDRYGDRNGGYCRVLRTVARQGDNAKMAIIELV 158          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|224009071|ref|XP_002293494.1| (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335] >gi|220970894|gb|EED89230.1| RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 187.578 bits (475), Expect = 5.314e-58
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0
Query:   97 MRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            MRH K+  KLGK ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDKDLV +LFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV
Sbjct:    1 MRHRKKLPKLGKPADQRKALLRALTTEIIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1210518812|dbj|GAX22358.1| (large subunit ribosomal protein L17 [Fistulifera solaris])

HSP 1 Score: 184.882 bits (468), Expect = 7.393e-57
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
Query:   96 MMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            MMRH K FK LGK ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV
Sbjct:    1 MMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 117          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|57335953|emb|CAH25378.1| (50S ribosomal protein L17 [Guillardia theta])

HSP 1 Score: 185.267 bits (469), Expect = 1.947e-56
Identity = 90/120 (75.00%), Postives = 99/120 (82.50%), Query Frame = 0
Query:   93 SMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            S++MMRHGKR  KLG   DQRKALLR+LTTE IRHGRI TTL RAKAVR  VDKMI L+K G L ARRQA+GWMYDK LV ALFEQA +RY ER GGYCRVL+TLPRKGDN+ M I+ELV
Sbjct:   37 SLEMMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|219110851|ref|XP_002177177.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411712|gb|EEC51640.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 182.57 bits (462), Expect = 5.835e-56
Identity = 91/116 (78.45%), Postives = 100/116 (86.21%), Query Frame = 0
Query:   97 MRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            MRH   FKKL K ADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAI+ELV
Sbjct:    1 MRHRHGFKKLSKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAIIELV 116          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|1189391616|gb|OSX78545.1| (hypothetical protein BU14_0106s0011 [Porphyra umbilicalis])

HSP 1 Score: 180.644 bits (457), Expect = 1.868e-54
Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 0
Query:   94 MDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            ++ MRH K+  KLGK ADQRKAL+R+LTTE IRHGRI TTL+RA+AVRK+VD MIGL+K G LH+RRQALG+++DK LV +LFE A +RYGER GGYCRVLRT+PR+GDNA MAI+ELV
Sbjct:   58 IEAMRHRKKVDKLGKPADQRKALMRSLTTEVIRHGRITTTLVRARAVRKHVDAMIGLAKDGSLHSRRQALGYIFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176          
BLAST of EWM22269.1 vs. NCBI_GenBank
Match: gi|298714012|emb|CBJ27244.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 174.866 bits (442), Expect = 4.705e-52
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 0
Query:   91 KGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
            + ++ MMRH K FKKL   ADQRKALLR LTT+ IRHGRI TT++RAKAVRK+VD MI LSK G LHARRQA+G++YDK LV ALFE   +RYGER GGY R++RT PRKGDNA MAI+ELV
Sbjct:   60 RSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181          
The following BLAST results are available for this feature:
BLAST of EWM22269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102730|gb|EWM22269.1|2.740e-154100.0050s ribosomal protein l17 [Nannochloropsis gaditan... [more]
gi|397641452|gb|EJK74655.1|1.577e-5978.33hypothetical protein THAOC_03655 [Thalassiosira oc... [more]
gi|1210531136|dbj|GAX10237.1|3.183e-5964.74large subunit ribosomal protein L17 [Fistulifera s... [more]
gi|1072233984|gb|OEU18714.1|1.400e-5866.2150S ribosomal protein L17 [Fragilariopsis cylindru... [more]
gi|224009071|ref|XP_002293494.1|5.314e-5879.31RK17, ribosomal protein 17 50S large ribosomal sub... [more]
gi|1210518812|dbj|GAX22358.1|7.393e-5778.63large subunit ribosomal protein L17 [Fistulifera s... [more]
gi|57335953|emb|CAH25378.1|1.947e-5675.0050S ribosomal protein L17 [Guillardia theta][more]
gi|219110851|ref|XP_002177177.1|5.835e-5678.45predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1189391616|gb|OSX78545.1|1.868e-5471.43hypothetical protein BU14_0106s0011 [Porphyra umbi... [more]
gi|298714012|emb|CBJ27244.1|4.705e-5269.67conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8434rna8434Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications