rna8434, rna8434 (mRNA) Nannochloropsis gaditana

Overview
Namerna8434
Unique Namerna8434
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1334
Alignment locationKK037248.1:671414..673320 -

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Properties
Property NameValue
Product50s ribosomal protein l17
Orig transcript idgnl|cribi|Naga_100504g2.6934.mrna
Orig protein idgnl|cribi|Naga_100504g2.6934
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:671414..673320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100504g2gene8175Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8434rna8434-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22269.1cds8407Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8434 ID=rna8434|Name=rna8434|organism=Nannochloropsis gaditana|type=mRNA|length=1334bp
AAAATAAGGTAGAGCTGTCCTTTGATGGGAGATCCATATTGAGTGTCCAC
GGATAGAATAGTTGTGTAGAGTGCGACATCTTTGGGCCTGTCAACTCATT
GCAGACAAAGTTTGCCCTGCAACCAACCTCCCCACCCCCCTTATCCATTA
AATGCATTAAACAAGATGCACCGCGCCACCATGGCCGGCATCGCTGGGAT
GCTTCTGAAAGCCTGCATGGTTACTACAACGACGGCCTTTCTCGTGTCTC
CCGGTCCACGGGTGCACGAACGTTCCTCGTCACGTTGTACCACTCATCTG
CGTGCTGCCGCCCCGATCGCTCCCGCGGGCTCATTTGCGGCCTCTCTGGA
GGCTCTCCACGACGCGACTATCACGACACTTACAGAAGCGCTCAAGGTGG
AGCCAACCGACTACCCGGCCTCCATGGAGCTGGACTCCTACGCGGGAAAA
AGCGGTGTTCAGGGCAGCATCGCAGGGTACAAGGGCAATGTTCGGCTGGT
TTGGACTGGGGAGGGGAAAATGATGCGCGAGAATGGGGTGGAAGGGGGGG
CGTCTATCGGAGCGACCTGGCCATCTGGGTGGGGCCTCTCACCTTGGTGC
CTCACTTGGTCTTCTCGCTCGAGCTGAGCGAGGGGGAGAGAGGGGAGGAG
GAAATCAAGCTGCTGCTTGACTACGTGCCCCGGGAGGATATCCAATACAC
GACGGGGAACAACCATCTGATGGATTATTTCGCCGGGCCCGCGCAGGAGG
TGAGGGGAGTGCTTCCCTACCCCCTCTTCTTTCCCCCTCGACAGACTACA
CTCATGCCCTTACCCTGCACACACAGGCGGCCGCCGCCGCTGCCTCCGAC
AGCTTCGCCCTGCGTCCACGGGTCCTCCCCTCCTTCTACTCCCGCGTCCT
CCTCTCCCCGTCCGCCCTCGCCCTCGCCCTCCCCGCCACGCCCCAGGGCC
TGGATCGGGCGCGGGCTTGGACAGAAGGACACGTACAGCGCTGGCTGGGC
TGGTGCGAGGGCGCCAAGGAGGTGGATAGGATGAAACGCGGTCTCCTCCT
CTCCCGGGACAACGGCGTGCGGCGGACCTGGGTGGAGGGGACGGCGGGGA
GTCTGGAGGGTTTTTGTGGGGGGGGAGGGAGGGAGGGGGGGCGCTGGCAA
AGCAAGCGGCGATCGCCATGAGTGGGCCACAGCAGGAGGCTTACGTGGGA
GGGTTCAGTTGAGGGCTGAGAGGGGGGAGGCGGGGAGGATGAGGGTGAGA
GCTGGTGGTTCCCCCCCAGGCCATGGTAAGGAGGACATGGGGAGATGAAA
GGCAAGATGCATCAGGTCAACTCTTTTTTGCCGA
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protein sequence of rna8434

>rna8434-protein ID=rna8434-protein|Name=rna8434|organism=Nannochloropsis gaditana|type=polypeptide|length=212bp
MNPLVHVFHRQCHRHGYFLALPAFSHPLKPETNTKNRARDMASRLFFFLA
AALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVSDFGGRSKGSMDMMRHG
KRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGL
SKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRK
GDNAPMAILELV
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mRNA from alignment at KK037248.1:671414..673320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8434 ID=rna8434|Name=rna8434|organism=Nannochloropsis gaditana|type=mRNA|length=1907bp|location=Sequence derived from alignment at KK037248.1:671414..673320- (Nannochloropsis gaditana)
GATGGTCGAGGGCGAATGGTTTCAGCGTTCTGGCCAGGTCACGTCCGTCC
ATGTCCGTCTTACGTATGTTGTTGCAGCGGAATTGGCTCTTGCCTGCCGT
GAACACTCAACTCATGTTTGATTGGAAAGGCGCGCGACACGTTCATTGCA
ACACTACGTTCTCAGGAGATAGGAGCAATTAAAACGTGACGCATGCCCAT
GTTGTGGATATGAACCCTCTTGTTCATGTTTTTCACAGGCAATGCCATCG
GCATGGATATTTCTTAGCCCTCCCTGCGTTCTCTCACCCGCTTAAACCGG
AAACCAACACCAAAAACAGAGCACGAGATATGGCTTCCCGCCTATTCTTC
TTCCTGGCGGCGGCTTTGGTCTTCTGCGGGGTGAATGCTTTCATGCTCCC
ATCCCCTTTGCCCCTTCGGGCAGGGGCTTCCTCCCGTGTCCTGTCGGTGG
AGGAGGTTTCTGACTTCGGAGGGCGATCGAAGGGATCCATGGACATGATG
CGCCATGGGAAACGATTTAAGAAGCTAGGGAAGGCGGCAGATCAGCGGAA
GGCTTTATTGCGCGCATTGACCACTGAGGGTGAGGAGGAGACGAGGACGT
CGAGGGGAAGGGAAGGATGAGGGCAAGAGGAAGTAAGGAGAAGACAGGAA
AAAGGAAATCGGGGAGAGAGGAACCGTTAATGGGAATGATACACTTGTTG
ATAGCGGAAAGTGTCAGAGTGGAGAGTGAGGGTGGAAAAGTACTGGCGAG
AAGTGACCAACGTCTTCCTATTGACCCTCTGTTGCCCTCTCCCTCCCTCC
CTCCCTCCCTCATTCCCTTCGCTCCCTCGCAGCCATCCGCCACGGTCGCA
TCAAGACCACTCTAATCCGCGCCAAGGCGGTGAGGAAGTATGTGGACAAG
ATGATTGGCTTGAGCAAGCGCGGGGATCTGCACGCCCGGCGCCAGGCGCT
GGGATGGATGTACGACAAGGACCTGGTGGCGGCGCTCTTTGAGCAGGTGG
GTGAAAATGGCGCGAAAGAAGGGGGGCAGAAGGGGCCGGACGGTGGGGAA
AGTAGGGGGCAATGAGACGCGTAAGCACAAGGCATGGCGGGCGTGGGAGG
GTGCCGAGGGAGTGAGGAGGTGTGTGCCTCTGGTCTGTGCGAAGGCAAGG
GAGTCACCCGACTTTGTGAGGAGGGATCGAGAGGGCACTGGACCCTGGCG
GCGTGGGCAGGGGCATGCCTGGCAGGGAATGGTGGTGGGAAAGCAGGAGG
GCTTCGGTAGCGAAGGCACTGACGCACACCCTCCCTCCCTTCCTCCCTCC
CTCCCTCCCAACCTCCTTCCCTTAATCAGGCGCAAGATCGATACGGGGAG
CGCGCTGGCGGCTACTGCCGTGTCCTGCGGACATTACCACGCAAGGGCGA
CAACGCTCCCATGGCCATCCTGGAGCTTGTCTAGGGGGGGAGGACGTATG
ATGTCTACGTATACAGAGAAACGAGGGTGGGCGGGGTGGACAGCATGAAG
TGGAGGGGGGGGGGGGCAAAGAGGGAAAGAGGAAAGGGGGGGGGCAAGAG
GGAGGCAGGATGTATGCGGCCCAGAGGAAGTGCGACAAGTGGAGGCACAG
GATGTTCCAGTGCGTTTCTCCTTGCGACGATGCGAGTGAGGCTGCGGTCT
TTCCCCAGCCCGCCTTCTTTGTGCGAGTGTGCCTCACGGTGGAGATGGAG
GAGGGCGTGGAGACTTTGTGGCGGGAACAGGGCTTTGCGCAGGGAGGGTG
ACGGGGAGGGAGGCACACACCGTGGAGAAGGAAGGGAGGGAGGGAGGGAA
CGAGGGGAGTGGGGGATTCCTCTCCGCACTGGTGGAGATGAAAAGAAATA
ATACAGGAGGGAATTTGCGCCATCATTTGAAAACAGTTCGGCAAAAAAGA
GTTGACC
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Coding sequence (CDS) from alignment at KK037248.1:671414..673320-

>rna8434 ID=rna8434|Name=rna8434|organism=Nannochloropsis gaditana|type=CDS|length=1917bp|location=Sequence derived from alignment at KK037248.1:671414..673320- (Nannochloropsis gaditana)
GCGCAAGATCGATACGGGGAGCGCGCTGGCGGCTACTGCCGTGTCCTGCG
GACATTACCACGCAAGGGCGACAACGCTCCCATGGCCATCCTGGAGCTTG
TCTAGCCATCCGCCACGGTCGCATCAAGACCACTCTAATCCGCGCCAAGG
CGGTGAGGAAGTATGTGGACAAGATGATTGGCTTGAGCAAGCGCGGGGAT
CTGCACGCCCGGCGCCAGGCGCTGGGATGGATGTACGACAAGGACCTGGT
GGCGGCGCTCTTTGAGCAGATGAACCCTCTTGTTCATGTTTTTCACAGGC
AATGCCATCGGCATGGATATTTCTTAGCCCTCCCTGCGTTCTCTCACCCG
CTTAAACCGGAAACCAACACCAAAAACAGAGCACGAGATATGGCTTCCCG
CCTATTCTTCTTCCTGGCGGCGGCTTTGGTCTTCTGCGGGGTGAATGCTT
TCATGCTCCCATCCCCTTTGCCCCTTCGGGCAGGGGCTTCCTCCCGTGTC
CTGTCGGTGGAGGAGGTTTCTGACTTCGGAGGGCGATCGAAGGGATCCAT
GGACATGATGCGCCATGGGAAACGATTTAAGAAGCTAGGGAAGGCGGCAG
ATCAGCGGAAGGCTTTATTGCGCGCATTGACCACTGAGGGCGCAAGATCG
ATACGGGGAGCGCGCTGGCGGCTACTGCCGTGTCCTGCGGACATTACCAC
GCAAGGGCGACAACGCTCCCATGGCCATCCTGGAGCTTGTCTAGCCATCC
GCCACGGTCGCATCAAGACCACTCTAATCCGCGCCAAGGCGGTGAGGAAG
TATGTGGACAAGATGATTGGCTTGAGCAAGCGCGGGGATCTGCACGCCCG
GCGCCAGGCGCTGGGATGGATGTACGACAAGGACCTGGTGGCGGCGCTCT
TTGAGCAGATGAACCCTCTTGTTCATGTTTTTCACAGGCAATGCCATCGG
CATGGATATTTCTTAGCCCTCCCTGCGTTCTCTCACCCGCTTAAACCGGA
AACCAACACCAAAAACAGAGCACGAGATATGGCTTCCCGCCTATTCTTCT
TCCTGGCGGCGGCTTTGGTCTTCTGCGGGGTGAATGCTTTCATGCTCCCA
TCCCCTTTGCCCCTTCGGGCAGGGGCTTCCTCCCGTGTCCTGTCGGTGGA
GGAGGTTTCTGACTTCGGAGGGCGATCGAAGGGATCCATGGACATGATGC
GCCATGGGAAACGATTTAAGAAGCTAGGGAAGGCGGCAGATCAGCGGAAG
GCTTTATTGCGCGCATTGACCACTGAGGGCGCAAGATCGATACGGGGAGC
GCGCTGGCGGCTACTGCCGTGTCCTGCGGACATTACCACGCAAGGGCGAC
AACGCTCCCATGGCCATCCTGGAGCTTGTCTAGCCATCCGCCACGGTCGC
ATCAAGACCACTCTAATCCGCGCCAAGGCGGTGAGGAAGTATGTGGACAA
GATGATTGGCTTGAGCAAGCGCGGGGATCTGCACGCCCGGCGCCAGGCGC
TGGGATGGATGTACGACAAGGACCTGGTGGCGGCGCTCTTTGAGCAGATG
AACCCTCTTGTTCATGTTTTTCACAGGCAATGCCATCGGCATGGATATTT
CTTAGCCCTCCCTGCGTTCTCTCACCCGCTTAAACCGGAAACCAACACCA
AAAACAGAGCACGAGATATGGCTTCCCGCCTATTCTTCTTCCTGGCGGCG
GCTTTGGTCTTCTGCGGGGTGAATGCTTTCATGCTCCCATCCCCTTTGCC
CCTTCGGGCAGGGGCTTCCTCCCGTGTCCTGTCGGTGGAGGAGGTTTCTG
ACTTCGGAGGGCGATCGAAGGGATCCATGGACATGATGCGCCATGGGAAA
CGATTTAAGAAGCTAGGGAAGGCGGCAGATCAGCGGAAGGCTTTATTGCG
CGCATTGACCACTGAGG
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Synonyms
Publications