rna8422, rna8422 (mRNA) Nannochloropsis gaditana

Overview
Namerna8422
Unique Namerna8422
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1004
Alignment locationKK037248.1:646608..647410 -

Link to JBrowse

Properties
Property NameValue
Productperoxisomal hydratase-dehydrogenase-epimerase
Orig transcript idgnl|cribi|Naga_102434g1.1372.mrna
Orig protein idgnl|cribi|Naga_102434g1.1372
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:646608..647410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102434g1gene8163Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8422rna8422-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22278.1cds8395Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8422 ID=rna8422|Name=rna8422|organism=Nannochloropsis gaditana|type=mRNA|length=1004bp
CTGGAGACAGTGGCAAGGAGTCGGTCGGCGTGCCTTGCGGACCATAGGAC
TGATATGAGGATCTTGCCTCCCCGCTTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCAGACCTCTTACCCCACCAGCAATAAC
GACGCTTTCGGTGAGATCATGTCCAACTTGGAGGGCCAAGAGGCCCCTCC
CCGCCCCCGTCTACTGCCTCCACCCCGGGCGCTGCCTCGAAGGAGAGCCT
TCTGGCAAGTGCGCCGCTTTTTGGGACCATGGAGAAGGCGCTAAAAAATG
AAGGCGCGGCCCTGGCCAAGAAGATCAATGGGAACTATCGCTTTGTGGTC
GACGACGGGAATTGGGTGCTGGATCTGAAGGGCGCGTCTCCATCCCTGCG
TATCGGAGACAAAGATAGTCCCGTAGACGTGACGTTGCGTGTAAGCGACG
CTGATTTTGTGCAAATCGTAACAGGGAAACTCAACAGCCAGCAGGCCTTC
ATGAAAGGAAAATTAAAGATCAAGGGAAACATGGGTATGGCTATGAAGTT
AGAGAGCATCCTCAAGCTAGCTCGTACGAAAGCTAAACTTTGATAGGGTT
ATTAAGAAGAAATGAGAGATGCATGTCATATATATGTAACTGGATCGACA
CAAAGGGGGCATGGTGTGCTGTAAGATCGCCGTGCGGGCAGGCGCCATGC
CCAAAGGGGGTTCTTCAAGAGGAACACAGAGGGAATAAACAAAGGCAAAG
TATTGAGAAATGTCGGGGATTAATTTGTTGGGAGGACAAAAGTAAAGACG
CTATTATCAATTAATGAGTCGTGGCCGATCAAACGCGCACAATGCACATG
CATGTGCACGTTCCCTCCCATCTGTGGATTTCACAACGGAAATTTGAATT
TTCTGAAAACCGTTAATTGTTCGAAAAGCCCGCATGACTGCCATGTGTGT
GCCTCGTCAAGCGCCTAAAAGTGGTGCGCATAATAATATTATGGTGAATC
TATC
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protein sequence of rna8422

>rna8422-protein ID=rna8422-protein|Name=rna8422|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEG
QGNYAAMKMGIAGLSATLAKEGVRYDVKVLFLPLALPLLPVFPYDALPSL
GVAFFLSSLSSPPLPSF
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mRNA from alignment at KK037248.1:646608..647410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8422 ID=rna8422|Name=rna8422|organism=Nannochloropsis gaditana|type=mRNA|length=803bp|location=Sequence derived from alignment at KK037248.1:646608..647410- (Nannochloropsis gaditana)
TACAGGATACCTGGGGTCGTGTGGACATCGTCATCAACAATGCCGGCATT
CTGCGCGACCGTTCCTTCCTGAAAATGACGGATCAAGACTGGGATCTCGT
GTACAAAGTCCATCTTCTCGGTATGCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTCTCTCCTGTC
GTTGCTTCCCCCCTCATTCTTTCTAGTCCAACAAAAATCTCTGCTCACAA
CTTCCCTGTCTTTTTCCCTCCCTTACTTGCCTCTTCAGGCACCTACAGGG
TTTCCAAAGCCGCCTGGCCCATCATGCGGCAGCAGAAGTACGGTCGTATC
GTGAACGTATCCTCGGCCTCGGGTCTCTATGGCAATGAAGGGGTGCGTCC
ATATCTCCTGCTTTCCTTTCCCTCCTTCCTTCCCTCCTCCTTGCCCCGTG
CTTGGCGTGGGGATTGTCTTGCCGTGACCTCGCCTCCTCCCTCCTCTCCT
TGGCCCGAGGCCTCCGCCCATTCAACCCCCTATTACCCTCCCTTGCCCCC
TGTCTCTTGCTCTCCCTCCTGGACACCAGCAAGGAAACTACGCGGCGATG
AAGATGGGCATTGCCGGCCTCAGCGCCACATTGGCCAAGGAAGGAGTGCG
ATACGATGTGAAGGTACTCTTCCTCCCTCTCGCCCTCCCCCTCCTCCCTG
TCTTCCCCTACGACGCCCTCCCGTCGCTTGGCGTTGCTTTCTTCCTGTCC
TCTTTGTCTTCTCCCCCATTACCCTCTTTTTGAAAGGGATCCCTGCTCCT
ACC
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Coding sequence (CDS) from alignment at KK037248.1:646608..647410-

>rna8422 ID=rna8422|Name=rna8422|organism=Nannochloropsis gaditana|type=CDS|length=1062bp|location=Sequence derived from alignment at KK037248.1:646608..647410- (Nannochloropsis gaditana)
CAAGGAAACTACGCGGCGATGAAGATGGGCATTGCCGGCCTCAGCGCCAC
ATTGGCCAAGGAAGGAGTGCGATACGATGTGAAGGTACTCTTCCTCCCTC
TCGCCCTCCCCCTCCTCCCTGTCTTCCCCTACGACGCCCTCCCGTCGCTT
GGCGTTGCTTTCTTCCTGTCCTCTTTGTCTTCTCCCCCATTACCCTCTTT
TTGAGCACCTACAGGGTTTCCAAAGCCGCCTGGCCCATCATGCGGCAGCA
GAAGTACGGTCGTATCGTGAACGTATCCTCGGCCTCGGGTCTCTATGGCA
ATGAAGGGATGACGGATCAAGACTGGGATCTCGTGTACAAAGTCCATCTT
CTCGCAAGGAAACTACGCGGCGATGAAGATGGGCATTGCCGGCCTCAGCG
CCACATTGGCCAAGGAAGGAGTGCGATACGATGTGAAGGTACTCTTCCTC
CCTCTCGCCCTCCCCCTCCTCCCTGTCTTCCCCTACGACGCCCTCCCGTC
GCTTGGCGTTGCTTTCTTCCTGTCCTCTTTGTCTTCTCCCCCATTACCCT
CTTTTTGAGCACCTACAGGGTTTCCAAAGCCGCCTGGCCCATCATGCGGC
AGCAGAAGTACGGTCGTATCGTGAACGTATCCTCGGCCTCGGGTCTCTAT
GGCAATGAAGGGATGACGGATCAAGACTGGGATCTCGTGTACAAAGTCCA
TCTTCTCGCAAGGAAACTACGCGGCGATGAAGATGGGCATTGCCGGCCTC
AGCGCCACATTGGCCAAGGAAGGAGTGCGATACGATGTGAAGGTACTCTT
CCTCCCTCTCGCCCTCCCCCTCCTCCCTGTCTTCCCCTACGACGCCCTCC
CGTCGCTTGGCGTTGCTTTCTTCCTGTCCTCTTTGTCTTCTCCCCCATTA
CCCTCTTTTTGAGCACCTACAGGGTTTCCAAAGCCGCCTGGCCCATCATG
CGGCAGCAGAAGTACGGTCGTATCGTGAACGTATCCTCGGCCTCGGGTCT
CTATGGCAATGAAGGGATGACGGATCAAGACTGGGATCTCGTGTACAAAG
TCCATCTTCTCG
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Synonyms
Publications