EWM22278.1, cds8395 (CDS) Nannochloropsis gaditana

Overview
NameEWM22278.1
Unique Namecds8395
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:647291..647336 -
Alignment locationKK037248.1:647019..647122 -
Alignment locationKK037248.1:646628..646831 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22278.1
Productperoxisomal hydratase-dehydrogenase-epimerase
Orig transcript idgnl|cribi|Naga_102434g1.1372.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:647291..647336 -
KK037248.1supercontigKK037248.1:647019..647122 -
KK037248.1supercontigKK037248.1:646628..646831 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|585102748|gb|EWM22278.1| (peroxisomal hydratase-dehydrogenase-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 236.498 bits (602), Expect = 7.447e-79
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKVLFLPLALPLLPVFPYDALPSLGVAFFLSSLSSPPLPSF 117
            MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKVLFLPLALPLLPVFPYDALPSLGVAFFLSSLSSPPLPSF
Sbjct:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKVLFLPLALPLLPVFPYDALPSLGVAFFLSSLSSPPLPSF 117          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|1173958797|gb|OQS05108.1| (hypothetical protein THRCLA_02713 [Thraustotheca clavata])

HSP 1 Score: 127.487 bits (319), Expect = 1.223e-33
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLL 89
            MT++DW+LV KVHL GT  V+KAAWPIMR+Q YGRI+NVSSASGLYGN GQ NYAA KMGIAG S T AKEG R ++KV +  PLA+  +
Sbjct:  105 MTEEDWNLVMKVHLNGTMSVTKAAWPIMREQNYGRIINVSSASGLYGNVGQANYAAAKMGIAGFSLTAAKEGGRNNIKVNVIAPLAMSRM 194          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|673029904|ref|XP_008868913.1| (hypothetical protein H310_05855 [Aphanomyces invadans] >gi|574475308|gb|ETW02308.1| hypothetical protein H310_05855 [Aphanomyces invadans])

HSP 1 Score: 123.635 bits (309), Expect = 3.559e-32
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLLPVFPYDALPSL 100
            MT  DWDLV +VHL GT  V++AAWP MR+QKYGRIVNVSSASGLYGN GQ NYAA KMGIAG + T AKEG R ++KV +  PLA+  +      A P +
Sbjct:  111 MTKNDWDLVMRVHLNGTMSVTRAAWPHMREQKYGRIVNVSSASGLYGNIGQTNYAAAKMGIAGFTFTAAKEGSRSNIKVNVVAPLAMSRMTETIETASPHV 211          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|813185881|ref|XP_012207112.1| (hypothetical protein SPRG_12670 [Saprolegnia parasitica CBS 223.65] >gi|641527915|gb|KDO22174.1| hypothetical protein SPRG_12670 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 121.709 bits (304), Expect = 2.434e-31
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLLP 90
            MTD+DW  V  VHL GT  V+KAAWPI+R Q+YGRI+NVSSASGLYGN GQ NY A KMGIAGLS T AKEG R ++KV +  PLA+  + 
Sbjct:  109 MTDEDWHSVLNVHLNGTMSVTKAAWPILRAQQYGRIINVSSASGLYGNVGQANYGAAKMGIAGLSFTAAKEGRRNNIKVNVIAPLAMSRMT 199          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|698788036|ref|XP_009827050.1| (hypothetical protein H257_04312, partial [Aphanomyces astaci] >gi|574118139|gb|ETV83620.1| hypothetical protein H257_04312, partial [Aphanomyces astaci])

HSP 1 Score: 121.324 bits (303), Expect = 3.428e-31
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLLPVFPYDALPSL 100
            MT  DWDLV +VHL GT  V+K+AWP MR+Q++GRIVNV+SASGLYGN GQ NYAA KMGIAG + T AKEG+R ++KV +  PLA+  +      A P +
Sbjct:  109 MTQDDWDLVLRVHLNGTMSVTKSAWPHMREQQFGRIVNVTSASGLYGNIGQANYAAAKMGIAGFTFTAAKEGIRSNIKVNVVAPLAMSRMTETIESASPKV 209          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|1214672903|gb|OWY96036.1| (Peroxisomal multifunctional enzyme type 2, partial [Phytophthora megakarya])

HSP 1 Score: 117.087 bits (292), Expect = 6.421e-31
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLA 85
            MT Q WD VYKVHL GT RV+KAAW  MR+Q++GRIVN++SASGLYGN GQ NY+AMK+GIAGL+ TL KEG + ++   +  PLA
Sbjct:   95 MTQQQWDDVYKVHLEGTMRVTKAAWETMREQEFGRIVNIASASGLYGNFGQANYSAMKLGIAGLTFTLCKEGAKRNIMANVVAPLA 180          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|1173954113|gb|OQS01606.1| (hypothetical protein ACHHYP_00576 [Achlya hypogyna])

HSP 1 Score: 120.168 bits (300), Expect = 7.047e-31
Identity = 59/90 (65.56%), Postives = 66/90 (73.33%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLL 89
            MT  DWD V  VHL GT  V+KAAWPIMR Q YGRI+NVSSASGLYGN GQ NY A KMGIAG S T AKEG R ++KV +  PLA+  +
Sbjct:   98 MTTDDWDAVINVHLNGTMSVTKAAWPIMRAQNYGRIINVSSASGLYGNVGQANYGAAKMGIAGFSFTAAKEGGRNNIKVNVIAPLAMSRM 187          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|1062157258|gb|ODO03864.1| (multifunctional beta-oxidation protein [Cryptococcus depauperatus CBS 7855])

HSP 1 Score: 123.635 bits (309), Expect = 2.236e-30
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLL--PVFPYDALPSLGVAFFLS 107
            M+DQDWDLV  VHL G+Y  +KA WP  RQQK+GR+VN SSA+GLYGN GQ NY+A KMG+ G + TLA+EG++Y++K  + +P+A   +   + P D L  L   F  S
Sbjct:  108 MSDQDWDLVIAVHLKGSYSCTKACWPYFRQQKFGRVVNTSSAAGLYGNRGQANYSAAKMGLVGFTRTLAREGIKYNIKTNVIVPMAASAMTETILPPDMLKGLKPEFIAS 217          

HSP 2 Score: 91.2781 bits (225), Expect = 4.740e-19
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV 79
            M++Q WD V +VH+ GT++  KA WPI +QQKYGRI+  +S +G+YG  GQ NY+  K GI G + +LA EG  + +KV
Sbjct:  407 MSEQMWDQVIQVHMRGTFKCVKAVWPIFQQQKYGRIITTASPNGIYGTIGQANYSTAKAGIVGFARSLAIEGSGHGIKV 485          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|1062143901|gb|ODN90554.1| (multifunctional beta-oxidation protein [Cryptococcus depauperatus CBS 7841])

HSP 1 Score: 122.865 bits (307), Expect = 3.851e-30
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLL--PVFPYDALPSLGVAFFLS 107
            M+DQDWDLV  +HL G+Y  +KA WP  RQQK+GR+VN SSA+GLYGN GQ NY+A KMG+ G + TLA+EG++Y++K  + +P+A   +   + P D L  L   F  S
Sbjct:  108 MSDQDWDLVIAIHLKGSYSCTKACWPYFRQQKFGRVVNTSSAAGLYGNRGQANYSAAKMGLVGFTRTLAREGIKYNIKTNVIVPMAASAMTETILPPDMLKGLKPEFIAS 217          

HSP 2 Score: 90.8929 bits (224), Expect = 5.326e-19
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV 79
            M++Q WD V +VH+ GT++  KA WPI +QQKYGRI+  +S +G+YG  GQ NY+  K GI G + +LA EG  + +KV
Sbjct:  407 MSEQMWDQVIQVHMRGTFKCVKAVWPIFQQQKYGRIITTASPNGIYGTIGQANYSTAKAGIVGFARSLAIEGSGHGIKV 485          
BLAST of EWM22278.1 vs. NCBI_GenBank
Match: gi|669158514|ref|XP_008614819.1| (hypothetical protein SDRG_10601 [Saprolegnia diclina VS20] >gi|530733570|gb|EQC31812.1| hypothetical protein SDRG_10601 [Saprolegnia diclina VS20])

HSP 1 Score: 117.857 bits (294), Expect = 6.434e-30
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    1 MTDQDWDLVYKVHLLGTYRVSKAAWPIMRQQKYGRIVNVSSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGVRYDVKV-LFLPLALPLLP 90
            MTD DW  V  VHL GT  V+KAAWPI+R Q YGR++NVSSASGLYGN GQ NY A KMGIAG S T AKEG R ++KV +  PLA+  + 
Sbjct:  109 MTDDDWHSVLNVHLNGTMSVTKAAWPILRAQNYGRVINVSSASGLYGNVGQANYGAAKMGIAGFSFTAAKEGSRNNIKVNVIAPLAMSRMT 199          
The following BLAST results are available for this feature:
BLAST of EWM22278.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102748|gb|EWM22278.1|7.447e-79100.00peroxisomal hydratase-dehydrogenase-epimerase [Nan... [more]
gi|1173958797|gb|OQS05108.1|1.223e-3367.78hypothetical protein THRCLA_02713 [Thraustotheca c... [more]
gi|673029904|ref|XP_008868913.1|3.559e-3261.39hypothetical protein H310_05855 [Aphanomyces invad... [more]
gi|813185881|ref|XP_012207112.1|2.434e-3164.84hypothetical protein SPRG_12670 [Saprolegnia paras... [more]
gi|698788036|ref|XP_009827050.1|3.428e-3158.42hypothetical protein H257_04312, partial [Aphanomy... [more]
gi|1214672903|gb|OWY96036.1|6.421e-3163.95Peroxisomal multifunctional enzyme type 2, partial... [more]
gi|1173954113|gb|OQS01606.1|7.047e-3165.56hypothetical protein ACHHYP_00576 [Achlya hypogyna... [more]
gi|1062157258|gb|ODO03864.1|2.236e-3051.82multifunctional beta-oxidation protein [Cryptococc... [more]
gi|1062143901|gb|ODN90554.1|3.851e-3050.91multifunctional beta-oxidation protein [Cryptococc... [more]
gi|669158514|ref|XP_008614819.1|6.434e-3062.64hypothetical protein SDRG_10601 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8422rna8422Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications