EWM22290.1, cds8383 (CDS) Nannochloropsis gaditana

Overview
NameEWM22290.1
Unique Namecds8383
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:604542..604563 -
Alignment locationKK037248.1:603802..603956 -
Alignment locationKK037248.1:603544..603639 -
Alignment locationKK037248.1:602995..603447 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22290.1
Productdna mismatch repair protein pms2
Orig transcript idgnl|cribi|Naga_100588g1.7650.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:604542..604563 -
KK037248.1supercontigKK037248.1:603802..603956 -
KK037248.1supercontigKK037248.1:603544..603639 -
KK037248.1supercontigKK037248.1:602995..603447 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006298mismatch repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0032300mismatch repair complex
Vocabulary: INTERPRO
TermDefinition
IPR028831Pms1/Pms2/PMS2L
IPR014790MutL_C
Homology
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|585102767|gb|EWM22290.1| (dna mismatch repair protein pms2 [Nannochloropsis gaditana])

HSP 1 Score: 488.804 bits (1257), Expect = 9.767e-175
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS 241
            MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS
Sbjct:    1 MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS 241          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|298710162|emb|CBJ31872.1| (postmeiotic segregation increased 2 [Ectocarpus siliculosus])

HSP 1 Score: 223.016 bits (567), Expect = 1.077e-63
Identity = 102/187 (54.55%), Postives = 137/187 (73.26%), Query Frame = 0
Query:   33 RDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            RD++AAAR FSRVL K H  ++ V+GQFNLGF+I  +G+D+FILDQHACDEKYNFE LQ TTT+H+Q L+ P PLE SA EE+ I++++  F+ NGF F +D +    +++K+ ++P+SKG QFG+ D+HELAS++ D++           P   VRLPK RAMFASRACR S MIGKAL + Q+ R
Sbjct:  688 RDSQAAARAFSRVLHKEHFTQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTIDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNT----------NPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMAR 864          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|570311445|gb|ETO59393.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1976])

HSP 1 Score: 204.527 bits (519), Expect = 9.669e-59
Identity = 104/197 (52.79%), Postives = 135/197 (68.53%), Query Frame = 0
Query:   27 SVSIAGR----DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            S S+ G     D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  360 STSVDGTAVETDNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 546          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|570311444|gb|ETO59392.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 204.527 bits (519), Expect = 1.319e-58
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  371 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 546          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|301112887|ref|XP_002998214.1| (mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4] >gi|262112508|gb|EEY70560.1| mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 204.912 bits (520), Expect = 3.481e-58
Identity = 101/186 (54.30%), Postives = 130/186 (69.89%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++G D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE+VIL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+               ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  474 DNEVAAAALQRVLKKEDFKRMQVLGQFNLGFIIGKLGNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLRLELTAGEEMVILDHLGVFTKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPMNTS----------TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 649          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|568033255|gb|ETM30973.1| (hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 204.527 bits (519), Expect = 3.994e-58
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|566007729|gb|ETI30640.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|566007730|gb|ETI30641.1| hypothetical protein, variant 3 [Phytophthora parasitica P1569])

HSP 1 Score: 204.527 bits (519), Expect = 4.207e-58
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|568003358|gb|ETL77708.1| (hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568003359|gb|ETL77709.1| hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 204.527 bits (519), Expect = 4.431e-58
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|675213279|ref|XP_008915524.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|675213281|ref|XP_008915525.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568084274|gb|ETM99210.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568084275|gb|ETM99211.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310])

HSP 1 Score: 204.527 bits (519), Expect = 4.525e-58
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLAVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637          
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|567945232|gb|ETK71043.1| (hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 204.527 bits (519), Expect = 5.051e-58
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219
            D E AA    RVL K   KR+ VLGQFNLGFII ++  D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P  LEL+A EE++IL+HL  F  NGF+F VD +A   +++KLLSLP++K  QFG +DI ELASLL D+            PA ++RLPK+ AMFASRACR SIMIG AL + ++ +
Sbjct:  462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637          
The following BLAST results are available for this feature:
BLAST of EWM22290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102767|gb|EWM22290.1|9.767e-175100.00dna mismatch repair protein pms2 [Nannochloropsis ... [more]
gi|298710162|emb|CBJ31872.1|1.077e-6354.55postmeiotic segregation increased 2 [Ectocarpus si... [more]
gi|570311445|gb|ETO59393.1|9.669e-5952.79hypothetical protein, variant 3 [Phytophthora para... [more]
gi|570311444|gb|ETO59392.1|1.319e-5854.30hypothetical protein, variant 2 [Phytophthora para... [more]
gi|301112887|ref|XP_002998214.1|3.481e-5854.30mismatch repair endonuclease pms1, putative [Phyto... [more]
gi|568033255|gb|ETM30973.1|3.994e-5854.30hypothetical protein, variant 3 [Phytophthora para... [more]
gi|566007729|gb|ETI30640.1|4.207e-5854.30hypothetical protein, variant 2 [Phytophthora para... [more]
gi|568003358|gb|ETL77708.1|4.431e-5854.30hypothetical protein, variant 2 [Phytophthora para... [more]
gi|675213279|ref|XP_008915524.1|4.525e-5854.30hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567945232|gb|ETK71043.1|5.051e-5854.30hypothetical protein, variant 2 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8410rna8410Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications