EWM22290.1, cds8383 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|585102767|gb|EWM22290.1| (dna mismatch repair protein pms2 [Nannochloropsis gaditana]) HSP 1 Score: 488.804 bits (1257), Expect = 9.767e-175 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0 Query: 1 MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS 241 MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS Sbjct: 1 MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS 241
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|298710162|emb|CBJ31872.1| (postmeiotic segregation increased 2 [Ectocarpus siliculosus]) HSP 1 Score: 223.016 bits (567), Expect = 1.077e-63 Identity = 102/187 (54.55%), Postives = 137/187 (73.26%), Query Frame = 0 Query: 33 RDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 RD++AAAR FSRVL K H ++ V+GQFNLGF+I +G+D+FILDQHACDEKYNFE LQ TTT+H+Q L+ P PLE SA EE+ I++++ F+ NGF F +D + +++K+ ++P+SKG QFG+ D+HELAS++ D++ P VRLPK RAMFASRACR S MIGKAL + Q+ R Sbjct: 688 RDSQAAARAFSRVLHKEHFTQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTIDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNT----------NPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMAR 864
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|570311445|gb|ETO59393.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1976]) HSP 1 Score: 204.527 bits (519), Expect = 9.669e-59 Identity = 104/197 (52.79%), Postives = 135/197 (68.53%), Query Frame = 0 Query: 27 SVSIAGR----DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 S S+ G D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 360 STSVDGTAVETDNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 546
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|570311444|gb|ETO59392.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976]) HSP 1 Score: 204.527 bits (519), Expect = 1.319e-58 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 371 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 546
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|301112887|ref|XP_002998214.1| (mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4] >gi|262112508|gb|EEY70560.1| mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4]) HSP 1 Score: 204.912 bits (520), Expect = 3.481e-58 Identity = 101/186 (54.30%), Postives = 130/186 (69.89%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++G D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE+VIL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 474 DNEVAAAALQRVLKKEDFKRMQVLGQFNLGFIIGKLGNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLRLELTAGEEMVILDHLGVFTKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPMNTS----------TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 649
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|568033255|gb|ETM30973.1| (hypothetical protein, variant 3 [Phytophthora parasitica]) HSP 1 Score: 204.527 bits (519), Expect = 3.994e-58 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|566007729|gb|ETI30640.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|566007730|gb|ETI30641.1| hypothetical protein, variant 3 [Phytophthora parasitica P1569]) HSP 1 Score: 204.527 bits (519), Expect = 4.207e-58 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|568003358|gb|ETL77708.1| (hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568003359|gb|ETL77709.1| hypothetical protein, variant 3 [Phytophthora parasitica]) HSP 1 Score: 204.527 bits (519), Expect = 4.431e-58 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|675213279|ref|XP_008915524.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|675213281|ref|XP_008915525.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568084274|gb|ETM99210.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568084275|gb|ETM99211.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310]) HSP 1 Score: 204.527 bits (519), Expect = 4.525e-58 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLAVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637
BLAST of EWM22290.1 vs. NCBI_GenBank
Match: gi|567945232|gb|ETK71043.1| (hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 204.527 bits (519), Expect = 5.051e-58 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0 Query: 34 DTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQVGR 219 D E AA RVL K KR+ VLGQFNLGFII ++ D+FI+DQHA DEK+N+ETLQ TT +H+Q L+ P LEL+A EE++IL+HL F NGF+F VD +A +++KLLSLP++K QFG +DI ELASLL D+ PA ++RLPK+ AMFASRACR SIMIG AL + ++ + Sbjct: 462 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPL---------NPA-TIRLPKVMAMFASRACRSSIMIGTALHKEEMQK 637 The following BLAST results are available for this feature:
BLAST of EWM22290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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