rna8410, rna8410 (mRNA) Nannochloropsis gaditana

Overview
Namerna8410
Unique Namerna8410
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length596
Alignment locationKK037248.1:602995..604563 -

Link to JBrowse

Properties
Property NameValue
Productdna mismatch repair protein pms2
Orig transcript idgnl|cribi|Naga_100588g1.7650.mrna
Orig protein idgnl|cribi|Naga_100588g1.7650
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:602995..604563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100588g1gene8151Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8410rna8410-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22290.1cds8383Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8410 ID=rna8410|Name=rna8410|organism=Nannochloropsis gaditana|type=mRNA|length=596bp
CCCCCGCCCTTCCCGTTCAGGGAGCAACCGGGACTACAATGTGGACCTGG
TGCCCAAGTTCATCATGGCCTGCGGCAATCTGGTGAAGATCCTCCTCCAC
ACCAAGGTGACGCGCTACTTGGAGTTCAAGAACGTGGATGGCAGCTACGT
CTTCCGACAGGGCAAGATCTACAAGGTACCTGCCACCTTGGACGAAGCTC
TCATGACGTCCCTGATCGGCCTCTTCGAGAAACGACGCTTCAGGAACTTT
CTCTCGTACCTCGCCAAATATGATGAAAAGGACCCGAGCACCTTTGGAGG
CTACGACCTGTCCCGTATGACCATGCGCGGCCTCTACGACAAGTATGGCC
TTGACGAGGGGACACGGACCTTCACGGGGCACGCCATGGCCTTGCACTTG
GATGACAGCTACTTGGAGAGACCCGCCCTCGAGACGGTGAAAGCGATCCA
GCTTTATGTCTACTCGTTGGAGCGGTACGGGAAGAGCCCTTACATATACC
CGATTTACGGCCTGGGAGGCCTGCCAGAGGGCTTCTCCCGCCTATGCGCC
ATCAATGGAGGCACATTCATGCTAGACCACAGCGTGGACGAGATCC
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protein sequence of rna8410

>rna8410-protein ID=rna8410-protein|Name=rna8410|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MEAEECEGREGGPEGREGGRANGEKESVSIAGRDTEAAARVFSRVLTKSH
LKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQR
LIAPKPLELSAMEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPY
SKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASR
ACRMSIMIGKALTRSQVGRGAWAEPLLGRRRKGGGGRTWWS
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mRNA from alignment at KK037248.1:602995..604563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8410 ID=rna8410|Name=rna8410|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at KK037248.1:602995..604563- (Nannochloropsis gaditana)
ATGGAGGCGGAGGAATGTGAAGGTTCAGGGGGGGAAAGCATCCTCCCCTC
CGAGCAAAGCGCGCTGTCGTCCCAGGGCCCGTCGCCGAAACGTCCTCGAC
GAGGGGAGGAAGGGGTGGAAGACAGGAGGGAAGGAGAGGGGAGGAGAGAG
GAGGGTGCGGGCGTGTACGCGGCGCGTTCGGGGTGGAGGGAGCGCCAGAG
GGTGCTGGGGGAGGAGGAGGGGGTGGAGGAGGAGGGGGTGGAGGAGGAGG
GGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGCCCCAGCGGCAGCCAAA
GGGACGGGAGGGGGGGGAGAGATAGGGGAGACTGAGTGCTCGTCGCCGAG
AGGTTTGGGGTGGAGGAAGGAGGGCGGGAAGGAGGGCAGGAAGGAGGGCG
GGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGG
AAGGAGGGCGGGAGGGTGGTCGACGGCCGAGGGGAGAGGGAGCGATCCTT
TGTCTTCGATGTGGAGAAAGCTTTGGCACGTGCCCAACAGGGAGGAAGCC
AAGGGGGGAAGGAGGGGAGGGTGACCTCGGTCTTGTCTGGGGTGACGAGG
GGGATAGGCAGGGAAGGAGGGCCGGAGGGAAGGGAGGGAGGGAGGGCTAA
CGGGGAGAAGGAGAGTGTTTCCATTGCGGGGAGGGACACGGAGGCCGCCG
CCCGAGTCTTCTCCCGGGTGCTGACCAAATCGCATTTGAAACGGCTGGTG
GTGCTTGGACAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGATGGCTGGTCCTGGCACCATGAGTTTCTCCTTGA
CCTGTAGCAATCCGAAATTTAAGAGATTTGATGGGATCTTTCTACCTTTT
CCCTTTTCACGGCATTGCGAGCAGTTCAATTTAGGCTTCATTATCGCGCG
CATCGGTGCCGACGTCTTTATCCTCGACCAGCACGCCTGCGACGAGAAGT
ACAACTTCGAGACACTTCAGGTACGGCGGGAGGGGAACCGGGATGGAGGG
ACATGGCGCGTGGCTGGAGGCTCACCGACCTCCCCCTTTCCTTTTCTCTC
CCTCCCATTCTCTTAGAGCACCACCACCCTGCACGAACAGCGCCTGATCG
CTCCCAAGCCCCTGGAACTGAGCGCGATGGAGGAAGTGGTCATCCTCGAG
CACCTCCCGACCTTCAAAGCCAACGGTTTCTCTTTCCGTGTGGACCCGGA
GGCGGGCCCCATGGAACGGATCAAGCTCCTTTCCCTCCCCTACTCGAAAG
GCATTCAGTTTGGGCTGCAGGACATCCACGAGCTCGCGTCCCTTTTGGGC
GACTCGTCCTTCTGTGGCGGGGTGGAGGAGGGGGCGGAAGGGCCCGCCCC
CTCGGTTCGGCTGCCCAAAATTCGCGCCATGTTCGCCTCCCGGGCTTGCC
GGATGTCGATCATGATCGGAAAGGCCTTGACGCGGTCACAGGTAGGGAGG
GGAGCGTGGGCAGAACCCCTGTTGGGAAGGCGCAGAAAAGGGGGGGGGGG
AAGGACTTGGTGGTCGTAG
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Coding sequence (CDS) from alignment at KK037248.1:602995..604563-

>rna8410 ID=rna8410|Name=rna8410|organism=Nannochloropsis gaditana|type=CDS|length=2904bp|location=Sequence derived from alignment at KK037248.1:602995..604563- (Nannochloropsis gaditana)
AGCACCACCACCCTGCACGAACAGCGCCTGATCGCTCCCAAGCCCCTGGA
ACTGAGCGCGATGGAGGAAGTGGTCATCCTCGAGCACCTCCCGACCTTCA
AAGCCAACGGTTTCTCTTTCCGTGTGGACCCGGAGGCGGGCCCCATGGAA
CGGATCAAGCTCCTTTCCCTCCCCTACTCGAAAGGCATTCAGTTTGGGCT
GCAGGACATCCACGAGCTCGCGTCCCTTTTGGGCGACTCGTCCTTCTGTG
GCGGGGTGGAGGAGGGGGCGGAAGGGCCCGCCCCCTCGGTTCGGCTGCCC
AAAATTCGCGCCATGTTCGCCTCCCGGGCTTGCCGGATGTCGATCATGAT
CGGAAAGGCCTTGACGCGGTCACAGGTAGGGAGGGGAGCGTGGGCAGAAC
CCCTGTTGGGAAGGCGCAGAAAAGGGGGGGGGGGAAGGACTTGGTGGTCG
TAGTTCAATTTAGGCTTCATTATCGCGCGCATCGGTGCCGACGTCTTTAT
CCTCGACCAGCACGCCTGCGACGAGAAGTACAACTTCGAGACACTTCAGG
CAGGGAAGGAGGGCCGGAGGGAAGGGAGGGAGGGAGGGCTAACGGGGAGA
AGGAGAGTGTTTCCATTGCGGGGAGGGACACGGAGGCCGCCGCCCGAGTC
TTCTCCCGGGTGCTGACCAAATCGCATTTGAAACGGCTGGTGGTGCTTGG
ACAGATGGAGGCGGAGGAATGTGAAGAGCACCACCACCCTGCACGAACAG
CGCCTGATCGCTCCCAAGCCCCTGGAACTGAGCGCGATGGAGGAAGTGGT
CATCCTCGAGCACCTCCCGACCTTCAAAGCCAACGGTTTCTCTTTCCGTG
TGGACCCGGAGGCGGGCCCCATGGAACGGATCAAGCTCCTTTCCCTCCCC
TACTCGAAAGGCATTCAGTTTGGGCTGCAGGACATCCACGAGCTCGCGTC
CCTTTTGGGCGACTCGTCCTTCTGTGGCGGGGTGGAGGAGGGGGCGGAAG
GGCCCGCCCCCTCGGTTCGGCTGCCCAAAATTCGCGCCATGTTCGCCTCC
CGGGCTTGCCGGATGTCGATCATGATCGGAAAGGCCTTGACGCGGTCACA
GGTAGGGAGGGGAGCGTGGGCAGAACCCCTGTTGGGAAGGCGCAGAAAAG
GGGGGGGGGGAAGGACTTGGTGGTCGTAGTTCAATTTAGGCTTCATTATC
GCGCGCATCGGTGCCGACGTCTTTATCCTCGACCAGCACGCCTGCGACGA
GAAGTACAACTTCGAGACACTTCAGGCAGGGAAGGAGGGCCGGAGGGAAG
GGAGGGAGGGAGGGCTAACGGGGAGAAGGAGAGTGTTTCCATTGCGGGGA
GGGACACGGAGGCCGCCGCCCGAGTCTTCTCCCGGGTGCTGACCAAATCG
CATTTGAAACGGCTGGTGGTGCTTGGACAGATGGAGGCGGAGGAATGTGA
AGAGCACCACCACCCTGCACGAACAGCGCCTGATCGCTCCCAAGCCCCTG
GAACTGAGCGCGATGGAGGAAGTGGTCATCCTCGAGCACCTCCCGACCTT
CAAAGCCAACGGTTTCTCTTTCCGTGTGGACCCGGAGGCGGGCCCCATGG
AACGGATCAAGCTCCTTTCCCTCCCCTACTCGAAAGGCATTCAGTTTGGG
CTGCAGGACATCCACGAGCTCGCGTCCCTTTTGGGCGACTCGTCCTTCTG
TGGCGGGGTGGAGGAGGGGGCGGAAGGGCCCGCCCCCTCGGTTCGGCTGC
CCAAAATTCGCGCCATGTTCGCCTCCCGGGCTTGCCGGATGTCGATCATG
ATCGGAAAGGCCTTGACGCGGTCACAGGTAGGGAGGGGAGCGTGGGCAGA
ACCCCTGTTGGGAAGGCGCAGAAAAGGGGGGGGGGGAAGGACTTGGTGGT
CGTAGTTCAATTTAGGCTTCATTATCGCGCGCATCGGTGCCGACGTCTTT
ATCCTCGACCAGCACGCCTGCGACGAGAAGTACAACTTCGAGACACTTCA
GGCAGGGAAGGAGGGCCGGAGGGAAGGGAGGGAGGGAGGGCTAACGGGGA
GAAGGAGAGTGTTTCCATTGCGGGGAGGGACACGGAGGCCGCCGCCCGAG
TCTTCTCCCGGGTGCTGACCAAATCGCATTTGAAACGGCTGGTGGTGCTT
GGACAGATGGAGGCGGAGGAATGTGAAGAGCACCACCACCCTGCACGAAC
AGCGCCTGATCGCTCCCAAGCCCCTGGAACTGAGCGCGATGGAGGAAGTG
GTCATCCTCGAGCACCTCCCGACCTTCAAAGCCAACGGTTTCTCTTTCCG
TGTGGACCCGGAGGCGGGCCCCATGGAACGGATCAAGCTCCTTTCCCTCC
CCTACTCGAAAGGCATTCAGTTTGGGCTGCAGGACATCCACGAGCTCGCG
TCCCTTTTGGGCGACTCGTCCTTCTGTGGCGGGGTGGAGGAGGGGGCGGA
AGGGCCCGCCCCCTCGGTTCGGCTGCCCAAAATTCGCGCCATGTTCGCCT
CCCGGGCTTGCCGGATGTCGATCATGATCGGAAAGGCCTTGACGCGGTCA
CAGGTAGGGAGGGGAGCGTGGGCAGAACCCCTGTTGGGAAGGCGCAGAAA
AGGGGGGGGGGGAAGGACTTGGTGGTCGTAGTTCAATTTAGGCTTCATTA
TCGCGCGCATCGGTGCCGACGTCTTTATCCTCGACCAGCACGCCTGCGAC
GAGAAGTACAACTTCGAGACACTTCAGGCAGGGAAGGAGGGCCGGAGGGA
AGGGAGGGAGGGAGGGCTAACGGGGAGAAGGAGAGTGTTTCCATTGCGGG
GAGGGACACGGAGGCCGCCGCCCGAGTCTTCTCCCGGGTGCTGACCAAAT
CGCATTTGAAACGGCTGGTGGTGCTTGGACAGATGGAGGCGGAGGAATGT
GAAG
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Synonyms
Publications