rna8404, rna8404 (mRNA) Nannochloropsis gaditana

Overview
Namerna8404
Unique Namerna8404
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length786
Alignment locationKK037248.1:583667..584514 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101653g2.10765.mrna
Orig protein idgnl|cribi|Naga_101653g2.10765
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:583667..584514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101653g2gene8144Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8404rna8404-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22297.1cds8377Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8404 ID=rna8404|Name=rna8404|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
CAGGGAGGCAACGCGCGCTGGAGGAGCTATAACCCAGTGGCCTAGGAAGG
TAGAGCGCCAGGACGAGTAAAAATGGGGGGACGCCTGGCCGATCAGCTCC
AGGGTCTACTGATGGAGCACCATGCAGATCTCCCTCCCGAGGCCCTCGAT
ATCTTGGAAGAGGAGCAGGGGAACCTCTCCCTCTTCCTTGCCTACGTGGT
CCTTCACCGTCGTCGGCTCCCGCATGCCTTGCTTTTTAAGCTTGCCGACA
TGTTGATTCCTCCCCATGTCTCTGCCGAGCACACGGAATTGCTGAAGGCC
GCTGCATCCACACATGCCGACGCTCGTCTTCCCTCTCCTCGGCACCTCCG
CACCTTCCTTTTGTCGTTGGGGTCCGCGGATCCACCCTCTGGATCCATCC
CTCCATCGTCGTCAGAGGCCATCCCCTCCACCGCACCTCCCTCCTTCTCG
CACCCGAGGCACCGAGGGCGAAAATGGAGTCGAAGGGCGGACGAAAAATA
CCGGATCGGGCTCATTCGTGCCGTCGCACGGGTATTGCACGCGCAGGGCC
TGGCCGACGACTATTTCTACTTCCCTCCTTCGCCCACGGGGCAGGCGGGC
CCAGGATCCGATGGAATTGGAAGGGGTGGAGGAGGAGAAGTAGGTGGGGG
AAGGGTGGGAGGAAGCAGCAGTGGCGCCCAAGCTGCCTTGCGGAACTCGA
TCCGCTTGCACCGCGTCCCACGACCTCAGCGGGGATTCACGGTGGCCATA
TGGCTGTGGTTGGAAGGCGGGAGGGAGGGCGGGGGG
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protein sequence of rna8404

>rna8404-protein ID=rna8404-protein|Name=rna8404|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MRTTMHLRRCASLLVTPPTMGPRCAGHQHRLSQRPLPYSMSSSRAWFCVH
TISEDEKSGAPLQSGPLQFYFKPPVSSASSPSAKVATSPFLRQTHSTFNK
SMKLINPCRLTLRPFFSGRPTSLSSTGPPSSSPPSGPAPPKPTWKELFKK
YGPAFLVYWNGVWILSGITIYAALELGGVDPLPLARAVHLDALIDLEKID
PSHGNVAVAILLNEVVEIVRFPFVLATVAKGGSGHGRGERREGGKAP
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mRNA from alignment at KK037248.1:583667..584514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8404 ID=rna8404|Name=rna8404|organism=Nannochloropsis gaditana|type=mRNA|length=848bp|location=Sequence derived from alignment at KK037248.1:583667..584514+ (Nannochloropsis gaditana)
ctttGACCCAAACAACTGAAAAGTTACACTCGACACCCACACCCAGGCCG
TGGACGGAGGTGTAGCCAGTGCTGTGAGCTAGCATTGCCGTCGTTGGTGT
ACAGAAGTATGCGAACCACCATGCACTTGCGCCGGTGTGCGTCCCTCCTG
GTGACTCCCCCCACCATGGGACCTCGGTGCGCCGGACATCAACATCGACT
GTCCCAACGCCCTCTGCCATActccatgtcctcgtcccGTGCATGGTTCT
GCGTACACACCATCTCCGAGGATGAAAAAAGCGGCGCGCCTTTGCAATCG
GGGCCCCTCCAATTCTACTTTAAACCACCCGtgtcctccgcttcctcccc
atcggcGAAGGTTGCAacgtctccttttcttcgtcaGACCCATTCCACCT
TCAACAAGAGCATGAAATTGATAAACCCCTGCCGTCTCACGCTacgtccc
ttcttttctggccgtcctacctccctctcctccacgggcccgccctcgtc
ttcccctccctccggtcccgccccccccaaaccCACGTGGAAGGAGCTTT
TCAAGAAGTAcggccccgccttcctcgtctatTGGAACGGGGTATGGATC
TTATCGGGGATCACCATCTATGCAGCGCTAGAACTGGGGGGCGTggaccc
ccttcccctggcaCGTGCTGTGCATTTGGACGCCTTGATTGATTTGGAGA
AAATCGATCCTTCGCACGGGAATGTGGCCGTGGCCATACTTTTgaacgag
gtggtggagatcgTACGCTTTCCTTTTGTCCTGGCGACGGTCGCCAAAGG
TGGGTCGGgccacgggaggggggaaaggagggaaggagggaaagcgcc
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Coding sequence (CDS) from alignment at KK037248.1:583667..584514+

>rna8404 ID=rna8404|Name=rna8404|organism=Nannochloropsis gaditana|type=CDS|length=740bp|location=Sequence derived from alignment at KK037248.1:583667..584514+ (Nannochloropsis gaditana)
ATGCGAACCACCATGCACTTGCGCCGGTGTGCGTCCCTCCTGGTGACTCC
CCCCACCATGGGACCTCGGTGCGCCGGACATCAACATCGACTGTCCCAAC
GCCCTCTGCCATActccatgtcctcgtcccGTGCATGGTTCTGCGTACAC
ACCATCTCCGAGGATGAAAAAAGCGGCGCGCCTTTGCAATCGGGGCCCCT
CCAATTCTACTTTAAACCACCCGtgtcctccgcttcctccccatcggcGA
AGGTTGCAacgtctccttttcttcgtcaGACCCATTCCACCTTCAACAAG
AGCATGAAATTGATAAACCCCTGCCGTCTCACGCTacgtcccttcttttc
tggccgtcctacctccctctcctccacgggcccgccctcgtcttcccctc
cctccggtcccgccccccccaaaccCACGTGGAAGGAGCTTTTCAAGAAG
TAcggccccgccttcctcgtctatTGGAACGGGGTATGGATCTTATCGGG
GATCACCATCTATGCAGCGCTAGAACTGGGGGGCGTggacccccttcccc
tggcaCGTGCTGTGCATTTGGACGCCTTGATTGATTTGGAGAAAATCGAT
CCTTCGCACGGGAATGTGGCCGTGGCCATACTTTTgaacgaggtggtgga
gatcgTACGCTTTCCTTTTGTCCTGGCGACGGTCGCCAAAGGTGGGTCGG
gccacgggaggggggaaaggagggaaggagggaaagcgcc
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Synonyms
Publications