EWM22297.1, cds8377 (CDS) Nannochloropsis gaditana

Overview
NameEWM22297.1
Unique Namecds8377
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:583775..584514 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22297.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101653g2.10765.mrna
GbkeyCDS
End range.
End range584514
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:583775..584514 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|585102779|gb|EWM22297.1| (hypothetical protein Naga_101653g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 501.516 bits (1290), Expect = 1.721e-179
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MRTTMHLRRCASLLVTPPTMGPRCAGHQHRLSQRPLPYSMSSSRAWFCVHTISEDEKSGAPLQSGPLQFYFKPPVSSASSPSAKVATSPFLRQTHSTFNKSMKLINPCRLTLRPFFSGRPTSLSSTGPPSSSPPSGPAPPKPTWKELFKKYGPAFLVYWNGVWILSGITIYAALELGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLATVAKGGSGHGRGERREGGKAP 247
            MRTTMHLRRCASLLVTPPTMGPRCAGHQHRLSQRPLPYSMSSSRAWFCVHTISEDEKSGAPLQSGPLQFYFKPPVSSASSPSAKVATSPFLRQTHSTFNKSMKLINPCRLTLRPFFSGRPTSLSSTGPPSSSPPSGPAPPKPTWKELFKKYGPAFLVYWNGVWILSGITIYAALELGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLATVAKGGSGHGRGERREGGKAP
Sbjct:    1 MRTTMHLRRCASLLVTPPTMGPRCAGHQHRLSQRPLPYSMSSSRAWFCVHTISEDEKSGAPLQSGPLQFYFKPPVSSASSPSAKVATSPFLRQTHSTFNKSMKLINPCRLTLRPFFSGRPTSLSSTGPPSSSPPSGPAPPKPTWKELFKKYGPAFLVYWNGVWILSGITIYAALELGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLATVAKGGSGHGRGERREGGKAP 247          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|635371663|emb|CCI40165.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 93.5893 bits (231), Expect = 2.761e-20
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0
Query:  147 LFKKYGPAFLVYWNGVWILSGITIYAALE---LGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            L K+YG  F+ YW G + +SG  IY A+E   L G D + L + + LD  +D+E ++PSHGN+A A LLNE+VE +RFPFVLAT
Sbjct:   53 LIKEYGLPFVAYWTGWYAISGAGIYFAIENGWLAGTDAIQLIQTIGLDRYVDIENLNPSHGNIAFAFLLNEIVETIRFPFVLAT 136          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|1173952634|gb|OQS00267.1| (hypothetical protein THRCLA_06079 [Thraustotheca clavata])

HSP 1 Score: 90.1225 bits (222), Expect = 9.113e-19
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 0
Query:   75 VSSASSPSAKVATSPFLRQTHSTFNKSMKLINPCRLTLRPFFSGRPTSLSSTGPPSSSPPS---GPAPPKP-TWKELFKKYGPAFLVYWNGVWILSGITIYAALE---LGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            +S   + S + A  P LR  H   N S + I+P   T+  F + R + L +      +  +        KP  +  + +  G  FLV+W  ++  SG TIY  L     GG D + L R + LD+ IDL+ ++P +GN+A+A++LNE++E VRFPF LAT
Sbjct:    2 LSMLRTTSVRTAVRPALRMLHP--NSSFRCISPSMSTVHFFSTKRESELEAENAKLKAQIAELEKKLENKPGKFMAMIQANGLPFLVWWTTLYGASGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLAT 159          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|1173926348|gb|OQR80617.1| (hypothetical protein ACHHYP_17415 [Achlya hypogyna])

HSP 1 Score: 82.4185 bits (202), Expect = 7.932e-16
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0
Query:  152 GPAFLVYWNGVWILSGITIYAALE---LGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            G  FLV+W  ++  SG TIY  L     GG D + L R + LD  +DLE ++P +GN+A+A++LNE++E VRFPF LAT
Sbjct:   80 GLPFLVWWTTLYGASGFTIYYGLSSGWFGGSDAVDLIRGLGLDKYVDLESLNPEYGNIAIAVVLNEILETVRFPFCLAT 158          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|813109019|ref|XP_012194438.1| (hypothetical protein SPRG_00832 [Saprolegnia parasitica CBS 223.65] >gi|641541008|gb|KDO34771.1| hypothetical protein SPRG_00832 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 81.6481 bits (200), Expect = 1.665e-15
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0
Query:  152 GPAFLVYWNGVWILSGITIYAALE---LGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            G  FLV+W  ++  +G TIY  L     GG D + L R + LD+ IDL+ ++P +GN+A+A++LNE++E VRFPF LAT
Sbjct:   83 GLPFLVWWTTLYGATGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLAT 161          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|669171605|ref|XP_008621151.1| (hypothetical protein SDRG_16711 [Saprolegnia diclina VS20] >gi|530727181|gb|EQC25423.1| hypothetical protein SDRG_16711 [Saprolegnia diclina VS20])

HSP 1 Score: 81.6481 bits (200), Expect = 1.847e-15
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0
Query:  152 GPAFLVYWNGVWILSGITIYAALE---LGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            G  FLV+W  ++  +G TIY  L     GG D + L R + LD+ IDL+ ++P +GN+A+A++LNE++E VRFPF LAT
Sbjct:   83 GLPFLVWWTTLYGATGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLAT 161          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|585102775|gb|EWM22294.1| (hypothetical protein Naga_100933g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 80.4925 bits (197), Expect = 1.960e-15
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0
Query:  142 PTWKELFKKYGPAFLVYWNGVWILSGITIYAALEL----GGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLATV 228
            P+W EL + +GP FLV+W  +W+L    ++   E       VD L LARA  +D ++DL  + PS GN+ VAI  NEV+E+VRFP  L TV
Sbjct:   32 PSWGELVRIHGPPFLVWWGTLWVLGAGGLFLGFEHHLFGADVDALTLARAWGVDKVVDLSGVPPSLGNMGVAIACNEVLEVVRFPLALLTV 122          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|669139286|ref|XP_008605211.1| (hypothetical protein SDRG_01464 [Saprolegnia diclina VS20] >gi|530743255|gb|EQC41497.1| hypothetical protein SDRG_01464 [Saprolegnia diclina VS20])

HSP 1 Score: 80.8777 bits (198), Expect = 2.104e-15
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0
Query:  152 GPAFLVYWNGVWILSGITIYAALE---LGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            G  FLV+W  ++  +G TIY  L     GG D + L R + LD+ IDL+ ++P +GN+A+A++LNE++E VRFPF LAT
Sbjct:   68 GLPFLVWWTTLYGATGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLAT 146          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|301119375|ref|XP_002907415.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105927|gb|EEY63979.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 81.2629 bits (199), Expect = 5.204e-15
Identity = 34/84 (40.48%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  148 FKKYGPAFLVYWNGVWILSGITIYAALELG---GVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLATV 228
             ++YG  FL +W  +++ SG++IY AL+ G   G   +     + LD  ID  ++DP++GN+A+A+++NE +EIVRFP  LAT+
Sbjct:  118 LQQYGLPFLAWWTSLYLASGVSIYVALDTGLVSGASIIDFIMQIGLDKFIDPARLDPTYGNIAIAVIVNEFLEIVRFPITLATL 201          
BLAST of EWM22297.1 vs. NCBI_GenBank
Match: gi|1072222731|gb|OEU07490.1| (hypothetical protein FRACYDRAFT_250908 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.337 bits (194), Expect = 7.096e-15
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 0
Query:  148 FKKYGPAFLVYWNGVWILSGITIYAALELGGVDPLPLARAVH-LDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLAT 227
            FK+ G  FL +W GVW+++G+ IY+ +EL G+D L + +     +  ID  K+DP  GNV  A+ +NE++E +RFPFVL T
Sbjct:   60 FKQLGMPFLAWWTGVWVVTGVGIYSGMELFGIDVLGMLQTTLPSNNYIDFSKVDPKTGNVMTAVAINELIEPIRFPFVLLT 140          
The following BLAST results are available for this feature:
BLAST of EWM22297.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102779|gb|EWM22297.1|1.721e-179100.00hypothetical protein Naga_101653g2, partial [Nanno... [more]
gi|635371663|emb|CCI40165.1|2.761e-2051.19unnamed protein product [Albugo candida][more]
gi|1173952634|gb|OQS00267.1|9.113e-1934.38hypothetical protein THRCLA_06079 [Thraustotheca c... [more]
gi|1173926348|gb|OQR80617.1|7.932e-1648.10hypothetical protein ACHHYP_17415 [Achlya hypogyna... [more]
gi|813109019|ref|XP_012194438.1|1.665e-1546.84hypothetical protein SPRG_00832 [Saprolegnia paras... [more]
gi|669171605|ref|XP_008621151.1|1.847e-1546.84hypothetical protein SDRG_16711 [Saprolegnia dicli... [more]
gi|585102775|gb|EWM22294.1|1.960e-1545.05hypothetical protein Naga_100933g1, partial [Nanno... [more]
gi|669139286|ref|XP_008605211.1|2.104e-1546.84hypothetical protein SDRG_01464 [Saprolegnia dicli... [more]
gi|301119375|ref|XP_002907415.1|5.204e-1540.48conserved hypothetical protein [Phytophthora infes... [more]
gi|1072222731|gb|OEU07490.1|7.096e-1544.44hypothetical protein FRACYDRAFT_250908 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8404rna8404Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications