EWM22308.1, cds8364 (CDS) Nannochloropsis gaditana

Overview
NameEWM22308.1
Unique Namecds8364
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:558979..559051 +
Alignment locationKK037248.1:559156..559246 +
Alignment locationKK037248.1:559520..560540 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22308.1
Productprotein of unknown function DUF1990
Orig transcript idgnl|cribi|Naga_100465g1.10754.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:558979..559051 +
KK037248.1supercontigKK037248.1:559156..559246 +
KK037248.1supercontigKK037248.1:559520..560540 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018960DUF1990
Homology
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|585102797|gb|EWM22308.1| (protein of unknown function DUF1990 [Nannochloropsis gaditana])

HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGESVPEKSVVANKSKWWWK 394
            MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGESVPEKSVVANKSKWWWK
Sbjct:    1 MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGESVPEKSVVANKSKWWWK 394          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|553185431|ref|XP_005854250.1| (hypothetical protein NGA_0192000, partial [Nannochloropsis gaditana CCMP526] >gi|422294810|gb|EKU22110.1| hypothetical protein NGA_0192000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0
Query:    1 MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVA 307
            MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVA
Sbjct:    1 MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMTPEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGLKRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCNAMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVA 307          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|1011995083|ref|XP_015954438.1| (UPF0548 protein At2g17695 isoform X4 [Arachis duranensis])

HSP 1 Score: 83.1889 bits (204), Expect = 5.758e-15
Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = 0
Query:  222 EGFKVKTQRVLLGKGPETYALAKDKIVNWS-----WGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLV 375
            +GF +  +RVLLG G ET+  +K  + +WS     W          EGE     V ++    L W M PL+ V  +E    ++G A       TL GHLL GEERF V  E   + +VW++VLSFSK A  L  L +P V+  QN F  +  + MQ  V
Sbjct:   50 DGFLLNNKRVLLGSGVETFEKSKAALKSWSHLGLDWAFVDPKTTIKEGEKFCVCVKEL----LPWVMMPLQVVYVNESR-KRKGVASFGFGSGTLHGHLLAGEERFSV--EIDEKNEVWYEVLSFSKPAHALSVLALPYVKLRQNYFAHESAKLMQNHV 201          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|1021489513|ref|XP_016187765.1| (UPF0548 protein At2g17695-like isoform X6 [Arachis ipaensis])

HSP 1 Score: 82.0333 bits (201), Expect = 1.341e-14
Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = 0
Query:  222 EGFKVKTQRVLLGKGPETYALAKDKIVNWS-----WGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLV 375
            +GF +  +RVLLG G ET+  +K  + +WS     W          EGE     V ++    L W M PL+ V  +E    ++G A       TL GHLL GEERF V  E   + +VW++VLSFSK A  L  L +P V+  QN F  +  + MQ  V
Sbjct:   50 DGFLLNNKRVLLGSGVETFEKSKAALKSWSHLGLDWAFVDPKTAIKEGEKFCVCVKEL----LPWLMMPLQVVYVNESR-KRKGVASFGFGSGTLHGHLLAGEERFSV--EIDEKNEVWYEVLSFSKPAHALSVLALPYVKLRQNYFAHESAKLMQNHV 201          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|1026028394|ref|XP_016560452.1| (PREDICTED: UPF0548 protein At2g17695 isoform X1 [Capsicum annuum] >gi|1026028396|ref|XP_016560453.1| PREDICTED: UPF0548 protein At2g17695 isoform X1 [Capsicum annuum])

HSP 1 Score: 80.8777 bits (198), Expect = 3.985e-14
Identity = 64/209 (30.62%), Postives = 93/209 (44.50%), Query Frame = 0
Query:  172 MGWPHSSRQVQHYLVALRQRKFNH--MYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNW-----SWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQK 373
            + W   S + Q   ++ R   FN+   + G T++ AP  +++ E        +GF V   RVL+G G +T+   K  + NW     +W      V    G      V +       W M PL+ V   E    K+G A  +    TL+GHLL GEERF +  +   Q  VW+++LSFSK A  L     P V   Q  F    G A++K
Sbjct:    4 LSWTRPSAEDQKACISNRSDSFNYDSRFRGATEKPAPLLKQDKE-----LAKDGFSVNCARVLVGSGLDTFEKGKAALQNWRHFGLNWAFVDPKVPIQSGTKFCVCVKEF----FPWVMMPLQVVYVDENKNLKKGVASFSFGSGTLQGHLLAGEERFSIALDENDQ--VWYEILSFSKPAHLLSLFGYPYVLLRQKYFAHHSGNAVKK 201          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|1040917396|ref|XP_017220949.1| (PREDICTED: UPF0548 protein At2g17695 [Daucus carota subsp. sativus])

HSP 1 Score: 80.4925 bits (197), Expect = 5.091e-14
Identity = 55/162 (33.95%), Postives = 73/162 (45.06%), Query Frame = 0
Query:  222 EGFKVKTQRVLLGKGPETYALAKDKIVNW-----SWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGES 378
            +GF V   +VLLG GPETY   K  +  W     +W           GE     V +I    + W M PL+ V  +E     +  A  +    TL+GHLL GEERF V  +   Q  VW+++LSFSK    + R+  P  R  Q  F      AMQ  V  +
Sbjct:   50 DGFFVNHAKVLLGSGPETYEKGKTALQTWKHFGMNWAFVDPQTPVQTGEKLCVCVKEI----VPWIMMPLQVVFVNESKMANKPVASFSFGSGTLKGHLLAGEERFSVELDENNQ--VWYEILSFSKPDHFISRIGYPYARLRQKYFANQSSSAMQNYVSSN 205          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|1021027162|gb|KZM84949.1| (hypothetical protein DCAR_027629 [Daucus carota subsp. sativus])

HSP 1 Score: 79.7221 bits (195), Expect = 5.203e-13
Identity = 54/157 (34.39%), Postives = 71/157 (45.22%), Query Frame = 0
Query:  222 EGFKVKTQRVLLGKGPETYALAKDKIVNW-----SWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQK 373
            +GF V   +VLLG GPETY   K  +  W     +W           GE     V +I    + W M PL+ V  +E     +  A  +    TL+GHLL GEERF V  +   Q  VW+++LSFSK    + R+  P  R  Q  F      AMQ 
Sbjct:   50 DGFFVNHAKVLLGSGPETYEKGKTALQTWKHFGMNWAFVDPQTPVQTGEKLCVCVKEI----VPWIMMPLQVVFVNESKMANKPVASFSFGSGTLKGHLLAGEERFSVELDENNQ--VWYEILSFSKPDHFISRIGYPYARLRQKYFANQSSSAMQN 200          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|1026028398|ref|XP_016560454.1| (PREDICTED: UPF0548 protein At2g17695 isoform X2 [Capsicum annuum])

HSP 1 Score: 76.2554 bits (186), Expect = 1.759e-12
Identity = 63/209 (30.14%), Postives = 93/209 (44.50%), Query Frame = 0
Query:  172 MGWPHSSRQVQHYLVALRQRKFNH--MYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNW-----SWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQK 373
            + W   S + Q   ++ +   FN+   + G T++ AP  +++ E        +GF V   RVL+G G +T+   K  + NW     +W      V    G      V +       W M PL+ V   E    K+G A  +    TL+GHLL GEERF +  +   Q  VW+++LSFSK A  L     P V   Q  F    G A++K
Sbjct:    4 LSWTRPSAEDQKACIS-KSDSFNYDSRFRGATEKPAPLLKQDKE-----LAKDGFSVNCARVLVGSGLDTFEKGKAALQNWRHFGLNWAFVDPKVPIQSGTKFCVCVKEF----FPWVMMPLQVVYVDENKNLKKGVASFSFGSGTLQGHLLAGEERFSIALDENDQ--VWYEILSFSKPAHLLSLFGYPYVLLRQKYFAHHSGNAVKK 200          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|951003081|ref|XP_014507503.1| (PREDICTED: UPF0548 protein At2g17695 [Vigna radiata var. radiata])

HSP 1 Score: 75.485 bits (184), Expect = 3.467e-12
Identity = 55/164 (33.54%), Postives = 78/164 (47.56%), Query Frame = 0
Query:  222 EGFKVKTQRVLLGKGPETYALAKDKI-------VNWSWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGES 378
            +GF +   RVL+G G ET+  +K  +       +NW++ +    V     + G+     ++ +   W   PL+ V  +E P  K   A  A    TL GHLL GEERF V  +   Q  VW++VLSFSK A  L  L  P V   Q  F  +  +AM K +  S
Sbjct:   50 DGFLLNEARVLVGSGIETFEKSKSALKSWRHFGLNWAFVDPKTPV-----QQGVKFCVCVKEF-FPWLTMPLQVVYVNETPKAKNRRASFAFGSGTLHGHLLAGEERFSVEIDENNQ--VWYEVLSFSKPAHILSFLGYPYVMLRQKHFANESSKAMLKHINSS 205          
BLAST of EWM22308.1 vs. NCBI_GenBank
Match: gi|970005464|ref|XP_015063577.1| (PREDICTED: UPF0548 protein At2g17695 isoform X1 [Solanum pennellii] >gi|970005466|ref|XP_015063578.1| PREDICTED: UPF0548 protein At2g17695 isoform X1 [Solanum pennellii])

HSP 1 Score: 75.0998 bits (183), Expect = 3.506e-12
Identity = 61/207 (29.47%), Postives = 95/207 (45.89%), Query Frame = 0
Query:  172 MGWPHSSRQVQHYLVALRQRKFNH--MYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNWSWGEEVKWVRF---SEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQK 373
            + W   S + Q   +  +   FN+   + G T++ AP  +++ E        +GF V   RVL+G G ET+   K  + NWS    + W      ++ + G      ++ +   W M PL+ V   E    K+G + +     TL+GHLL GEERF +  +      VW+++LSFSK A  L     P V   Q  F    G A++K
Sbjct:    4 LSWTRPSPEEQKACIN-KSGSFNYDKRFRGTTEKPAPLLKQDSE-----LAKDGFSVNCARVLVGSGRETFEKGKAALQNWSRHFGLNWAFVDPKAQIQSGTKFCVCVKEF-FPWLMMPLQVVYVSENKNSKKGASFS-FGSGTLQGHLLAGEERFSIALD--ENDLVWYEILSFSKPAHLLSLFGYPYVLLRQKYFAHQSGSAVKK 200          
The following BLAST results are available for this feature:
BLAST of EWM22308.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102797|gb|EWM22308.1|0.000e+0100.00protein of unknown function DUF1990 [Nannochlorops... [more]
gi|553185431|ref|XP_005854250.1|0.000e+0100.00hypothetical protein NGA_0192000, partial [Nannoch... [more]
gi|1011995083|ref|XP_015954438.1|5.758e-1537.11UPF0548 protein At2g17695 isoform X4 [Arachis dura... [more]
gi|1021489513|ref|XP_016187765.1|1.341e-1437.11UPF0548 protein At2g17695-like isoform X6 [Arachis... [more]
gi|1026028394|ref|XP_016560452.1|3.985e-1430.62PREDICTED: UPF0548 protein At2g17695 isoform X1 [C... [more]
gi|1040917396|ref|XP_017220949.1|5.091e-1433.95PREDICTED: UPF0548 protein At2g17695 [Daucus carot... [more]
gi|1021027162|gb|KZM84949.1|5.203e-1334.39hypothetical protein DCAR_027629 [Daucus carota su... [more]
gi|1026028398|ref|XP_016560454.1|1.759e-1230.14PREDICTED: UPF0548 protein At2g17695 isoform X2 [C... [more]
gi|951003081|ref|XP_014507503.1|3.467e-1233.54PREDICTED: UPF0548 protein At2g17695 [Vigna radiat... [more]
gi|970005464|ref|XP_015063577.1|3.506e-1229.47PREDICTED: UPF0548 protein At2g17695 isoform X1 [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8391rna8391Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications