rna8391, rna8391 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8391
Unique Name	rna8391
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1344
Alignment location	KK037248.1:558495..560778 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF1990
Orig transcript id	gnl\|cribi\|Naga_100465g1.10754.mrna
Orig protein id	gnl\|cribi\|Naga_100465g1.10754
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:558495..560778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100465g1	gene8131	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8391	rna8391-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22308.1	cds8364	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:558495..560778+
coding sequence from alignment at KK037248.1:558495..560778+

mRNA sequence

>rna8391 ID=rna8391|Name=rna8391|organism=Nannochloropsis gaditana|type=mRNA|length=1344bp
GCTACTCCTACGGCTAGCCCGACCGCCAGCCCCACTGCCAGCCCTACGGC
TACCCCCACTGCTAGTCCTACGGGTACTCCTACGGCTACCCCCACTGCCA
GCCCTACGGCTACTCCCACGGCTGCCCCCACTGCCAGCCCTACGGCTACT
CCTACGGCTACCCCCACTGCAAACCCCACGGCTACTCCTACGGCTAGCCC
GACCGCCAGCCCCACTGCCAGCCCTACGGCTACCCCCACGGCAAGTCCCA
CTGGGAGCCCCACTGCTAGCCCTACCCCAAGTCCGACAGGGGCTCCCACG
GCTACTCCCACGACTGCCCCCACGCCTCCTACGCCTGCTCCCACGCCTCT
CACCACTCCTCCTTGTTTCAACAAGGATGCACGCGTCATCATGGCGGATG
GGTCTTCGAAGGCCGTTCATGCTCTTCGAAAAGGAGATGTTGTCTCGGTC
GATCCCAACAACGATCGTCTACACGCGAAAGTTCTCTCCCTTGTCGAATC
TGTCGTCGAAGGAGATGGCAATCGACCTGTTCGCATGTGCGAGATGCGGC
CCGGGTTTCTGCTTACACCCACGCACCCTCTGTTGGTAAATGGGACCCGT
TGGATTCGACCCGAGTGGGAGTTTGCCTGTGACACACACGAGTACCCTCC
GACATTGTTTAACATAATCTTGGAGGAGGGTCCGCACTACTCTGTCAATA
TCGAAGGCTTCGCCGTCGCCACATATGTGAAGTACCCTGTCGGGGTTCCT
ATGATCGATCTTCCGTACAAAATGCAGCAATACCGCGTCATAGAGCAAGA
TCCTGGCTTTGCGGCAGGGCACGTCAAGGTGGACGCTCACAGGCTCATTC
ATCTCAAGACGGAATGGTTGAAAGCTAATAAAGGTCTCGCAATGTCTGAG
GCGTCTATTTCACTGCAAACGACGGTGTCCGAGAACTCTCACATGGCGGA
GCTCTAAGGCTGTCTTCATCACAGCTGGGCTAGCCCCACTTCTCTTCTAG
TCCCACGGCTACTGCTACGGCAAGGCCCCCTTAACTATAGATATATTTCC
TATTCAGATAAAGAGATGCACTTCTCCCCAAGAGACGTTTTCAAATCATT
GAAGTCTCGTAGATATGCCAGTACGCACAAAGGATTCTCGTGCTTCCTGA
AGTCTGTTTGACGTAGAGAAAGAGGATGCACCAAGATCTTGTTCCCCCTG
ATATAAGTTAGATAGAAGCATCTTGTTGTCATGGTGGCTGTTGAGCTTTC
CTTAATTTATTTCGGAGCAAGAACTTAATGAAAGTACATTTCCTTCTATA
CCGCCATAAGACGACACAAAAAAAGAATTGGATCGGTACATAAG

protein sequence of rna8391

>rna8391-protein ID=rna8391-protein|Name=rna8391|organism=Nannochloropsis gaditana|type=polypeptide|length=394bp
MRVVELHALTTVALLFALLARGTEGGAVTYANHGEPALQAHFSDFYEIMT
PEDYRIYQDRLHEIIDWGLRNTRQQDLRKGFLQGVAEDWRFVPTPLRQGL
KRRHKDFGPLQERRRVTLDERNRQMRDRIDRGVAKKGYLVAYYMFNHDCN
AMGPAEDREHSLFFQPLPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGV
TQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETYALAKDKIVNW
SWGEEVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCHEKPWGKRG
GAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGR
LLMPVVRPLQNRFLVDVGRAMQKLVGESVPEKSVVANKSKWWWK

mRNA from alignment at KK037248.1:558495..560778+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8391 ID=rna8391|Name=rna8391|organism=Nannochloropsis gaditana|type=mRNA|length=2284bp|location=Sequence derived from alignment at KK037248.1:558495..560778+ (Nannochloropsis gaditana)
AAGCTTCACCTTCATTTCCACCGAAAATCTCGTCCTGGTGACAGGCGAAA
AAGTAATGAGAAAATATGAACACTAGAATATACTTCGAATTTCGACAGCT
CGCACGCAGTTGAATATTGTGCGAGTCTTTACGATCACGTAGAATTATGT
AAAGGGTTTTGAGCAGCCCTTCAGTCTTCAACCACCTGCCCTCAGTCGTC
GAAGGCATGGGAAAGTACTTTCTAGTATCGAAATTAACAATTGGCAAGAA
ATCGCCTAACCGATGCATACCCATCAATCATCAATAATGGACTGGCACTT
GGCAATTGTTTCAGCTTTTCAAAACTTTCTTCATGTTGTTTTCCAAGAGa
acgcttcttcctctcgaGACAGATTTCACAACACAAATTGGGGAACTTGA
GTCACTCATCAGCTTGCTTCATATCATATCAATCCTCCTGCCGTAGCTTA
CTCACCACAGACTGAAAGGGGACTTCGACTTCCTATGCGTGTCGTCGAGC
TTCATGCTTTGACGACTGTAGCACTGCTTTTCGCGTTGTTGgcgagaggg
acggaaggtATGCCGGTTTAAGCCTCAAAGGATATTTTTTATACTTGTCT
GGTACTTCGAAGTGCACATACCTGTGTAGATACTTAACATTTTTACATCG
TACGCATGCAGGGGGAGCGGTCACATATGCCAATCACGGGGAGCCTGCCC
TGCAGGCGCATTTCAGTGATTTCTACGAGATAATGACTCCCGAGGACTAC
AGGTAACATGAATCAGCTTAATGATGATAGGAGTGAGATTTTGTGAAGCT
GAAGCTGTGAATGGGTCTTCAGCGGAGTAAAAGTATTTTGTGTTTTTGAC
AAGAGACAACGCTACACTACACTACATCCTCTCCGttccccctacctcct
ttcctctcttcttcccttcttcctttcctcttccattccctccgtTTTTA
TTCCCTCGTTCTTCTTTCATTCCCTTATTTTGTTACTTCTACCTCTTACC
CCCTCTCTTTTATCCCGTCGTTCAGAATCTACCAGGACCGCCTCCATGAG
ATCATCGATTGGGGCCTACGCAACACCCGTCAGCAAGACCTTCGTAAAGG
TTTCCTCCAGGGGGTCGCAGAGGATTGGCGATTCGTGCCCACGCCCCTGC
GCCAGGGTCTCAAGCGCCGGCACAAGGATTTCGGGCCCCTCCAGGAGCGG
CGCCGGGTGACCTTGGATGAGCGAAATCGGCAGATGCGGGATAGGATCGA
TCGGGGTGTGGCAAAGAAAGGCTACCTAGTCGCCTACTACATGTTCAATC
ACGACTGCAATGCCATGGGGCCTGCAGAAGACAGGGAgcattcccttttc
ttccagCCGCTGCCGCGTCTTCGCATGGGCTGGCCGCATTCGTCCCGGCA
AGTCCAGCATTATCTGGTCGCTCTGCGTCAAAGAAAATTTAATCACATGT
ACGTTGGGGTCACCCAGGAATTCGCGCCGtacggggaaagagaagtaGAG
GATTGGCTTCGACTGAAAGGCTACGAAGGATTCAAGGTAAAGACCCAGCG
AGTCCTCCTAGGCAAAGGACCCGAGACGTACGCGTTAGCGAAGGATAAGA
TAGTGAACTGgtcgtggggggaggaggtgaaatgGGTGCGATTTTCGGAA
GGGGAACATGGGATCAACGTGGTGAGTCAGATCCGGACCTACGGTTTGTT
GTGGACGATGAATCCGTTGCGGAAGGTTCTCTGCCACGAAAAGCCATGGG
GCAAacggggcggggcggtggcggcggtggcggtgagCACGCTGCGAGGA
CACTtactggaaggggaggagaggtttTGCGTCTGGttcgaaggaggaag
acagggagacGTGTGGTTCGACGTGCTTTCCTTCAGTAAGGGCGCTTTCC
CATTAGGGCGGTTGTTGATGCCCGTGGTGAGACCGTTACAGAACCGTTTC
TTGGTCGACGTTGGAAGAGCAATGCAGAAGCTGGTAGGAGAATCGGTACC
AGAAAAAAGCGTGGTGGCGAACAAATCAAAATGGTGGTGGAAATGAGGGA
TtcggaaaaggaaagggaagaggaggggcatggaggtGCAGCATTTTGTA
GAGGGCGGCCCAGTGTGAGGATGCGTGTGTATATAAGGGTAGGCTTGGGA
GGTGGTAGCGCATCACCCCTCCCAGGGTAGCATCTCTGACTATGAatgtg
aagaaagagggatcGAAGATTCTCGAAGAAAACGCGACGCGTCGGAAACG
CACGATTggtcgtccccgccctcgcttaCGTTGC

Coding sequence (CDS) from alignment at KK037248.1:558495..560778+

>rna8391 ID=rna8391|Name=rna8391|organism=Nannochloropsis gaditana|type=CDS|length=3555bp|location=Sequence derived from alignment at KK037248.1:558495..560778+ (Nannochloropsis gaditana)
ATGCGTGTCGTCGAGCTTCATGCTTTGACGACTGTAGCACTGCTTTTCGC
GTTGTTGgcgagagggacggaagGGGGAGCGGTCACATATGCCAATCACG
GGGAGCCTGCCCTGCAGGCGCATTTCAGTGATTTCTACGAGATAATGACT
CCCGAGGACTACAGAATCTACCAGGACCGCCTCCATGAGATCATCGATTG
GGGCCTACGCAACACCCGTCAGCAAGACCTTCGTAAAGGTTTCCTCCAGG
GGGTCGCAGAGGATTGGCGATTCGTGCCCACGCCCCTGCGCCAGGGTCTC
AAGCGCCGGCACAAGGATTTCGGGCCCCTCCAGGAGCGGCGCCGGGTGAC
CTTGGATGAGCGAAATCGGCAGATGCGGGATAGGATCGATCGGGGTGTGG
CAAAGAAAGGCTACCTAGTCGCCTACTACATGTTCAATCACGACTGCAAT
GCCATGGGGCCTGCAGAAGACAGGGAgcattcccttttcttccagCCGCT
GCCGCGTCTTCGCATGGGCTGGCCGCATTCGTCCCGGCAAGTCCAGCATT
ATCTGGTCGCTCTGCGTCAAAGAAAATTTAATCACATGTACGTTGGGGTC
ACCCAGGAATTCGCGCCGtacggggaaagagaagtaGAGGATTGGCTTCG
ACTGAAAGGCTACGAAGGATTCAAGGTAAAGACCCAGCGAGTCCTCCTAG
GCAAAGGACCCGAGACGTACGCGTTAGCGAAGGATAAGATAGTGAACTGg
tcgtggggggaggaggtgaaatgGGTGCGATTTTCGGAAGGGGAACATGG
GATCAACGTGGTGAGTCAGATCCGGACCTACGGTTTGTTGTGGACGATGA
ATCCGTTGCGGAAGGTTCTCTGCCACGAAAAGCCATGGGGCAAacggggc
ggggcggtggcggcggtggcggtgagCACGCTGCGAGGACACTtactgga
aggggaggagaggtttTGCGTCTGGttcgaaggaggaagacagggagacG
TGTGGTTCGACGTGCTTTCCTTCAGTAAGGGCGCTTTCCCATTAGGGCGG
TTGTTGATGCCCGTGGTGAGACCGTTACAGAACCGTTTCTTGGTCGACGT
TGGAAGAGCAATGCAGAAGCTGGTAGGAGAATCGGTACCAGAAAAAAGCG
TGGTGGCGAACAAATCAAAATGGTGGTGGAAATGAATGCGTGTCGTCGAG
CTTCATGCTTTGACGACTGTAGCACTGCTTTTCGCGTTGTTGgcgagagg
gacggaagGGGGAGCGGTCACATATGCCAATCACGGGGAGCCTGCCCTGC
AGGCGCATTTCAGTGATTTCTACGAGATAATGACTCCCGAGGACTACAGA
ATCTACCAGGACCGCCTCCATGAGATCATCGATTGGGGCCTACGCAACAC
CCGTCAGCAAGACCTTCGTAAAGGTTTCCTCCAGGGGGTCGCAGAGGATT
GGCGATTCGTGCCCACGCCCCTGCGCCAGGGTCTCAAGCGCCGGCACAAG
GATTTCGGGCCCCTCCAGGAGCGGCGCCGGGTGACCTTGGATGAGCGAAA
TCGGCAGATGCGGGATAGGATCGATCGGGGTGTGGCAAAGAAAGGCTACC
TAGTCGCCTACTACATGTTCAATCACGACTGCAATGCCATGGGGCCTGCA
GAAGACAGGGAgcattcccttttcttccagCCGCTGCCGCGTCTTCGCAT
GGGCTGGCCGCATTCGTCCCGGCAAGTCCAGCATTATCTGGTCGCTCTGC
GTCAAAGAAAATTTAATCACATGTACGTTGGGGTCACCCAGGAATTCGCG
CCGtacggggaaagagaagtaGAGGATTGGCTTCGACTGAAAGGCTACGA
AGGATTCAAGGTAAAGACCCAGCGAGTCCTCCTAGGCAAAGGACCCGAGA
CGTACGCGTTAGCGAAGGATAAGATAGTGAACTGgtcgtggggggaggag
gtgaaatgGGTGCGATTTTCGGAAGGGGAACATGGGATCAACGTGGTGAG
TCAGATCCGGACCTACGGTTTGTTGTGGACGATGAATCCGTTGCGGAAGG
TTCTCTGCCACGAAAAGCCATGGGGCAAacggggcggggcggtggcggcg
gtggcggtgagCACGCTGCGAGGACACTtactggaaggggaggagaggtt
tTGCGTCTGGttcgaaggaggaagacagggagacGTGTGGTTCGACGTGC
TTTCCTTCAGTAAGGGCGCTTTCCCATTAGGGCGGTTGTTGATGCCCGTG
GTGAGACCGTTACAGAACCGTTTCTTGGTCGACGTTGGAAGAGCAATGCA
GAAGCTGGTAGGAGAATCGGTACCAGAAAAAAGCGTGGTGGCGAACAAAT
CAAAATGGTGGTGGAAATGAATGCGTGTCGTCGAGCTTCATGCTTTGACG
ACTGTAGCACTGCTTTTCGCGTTGTTGgcgagagggacggaagGGGGAGC
GGTCACATATGCCAATCACGGGGAGCCTGCCCTGCAGGCGCATTTCAGTG
ATTTCTACGAGATAATGACTCCCGAGGACTACAGAATCTACCAGGACCGC
CTCCATGAGATCATCGATTGGGGCCTACGCAACACCCGTCAGCAAGACCT
TCGTAAAGGTTTCCTCCAGGGGGTCGCAGAGGATTGGCGATTCGTGCCCA
CGCCCCTGCGCCAGGGTCTCAAGCGCCGGCACAAGGATTTCGGGCCCCTC
CAGGAGCGGCGCCGGGTGACCTTGGATGAGCGAAATCGGCAGATGCGGGA
TAGGATCGATCGGGGTGTGGCAAAGAAAGGCTACCTAGTCGCCTACTACA
TGTTCAATCACGACTGCAATGCCATGGGGCCTGCAGAAGACAGGGAgcat
tcccttttcttccagCCGCTGCCGCGTCTTCGCATGGGCTGGCCGCATTC
GTCCCGGCAAGTCCAGCATTATCTGGTCGCTCTGCGTCAAAGAAAATTTA
ATCACATGTACGTTGGGGTCACCCAGGAATTCGCGCCGtacggggaaaga
gaagtaGAGGATTGGCTTCGACTGAAAGGCTACGAAGGATTCAAGGTAAA
GACCCAGCGAGTCCTCCTAGGCAAAGGACCCGAGACGTACGCGTTAGCGA
AGGATAAGATAGTGAACTGgtcgtggggggaggaggtgaaatgGGTGCGA
TTTTCGGAAGGGGAACATGGGATCAACGTGGTGAGTCAGATCCGGACCTA
CGGTTTGTTGTGGACGATGAATCCGTTGCGGAAGGTTCTCTGCCACGAAA
AGCCATGGGGCAAacggggcggggcggtggcggcggtggcggtgagCACG
CTGCGAGGACACTtactggaaggggaggagaggtttTGCGTCTGGttcga
aggaggaagacagggagacGTGTGGTTCGACGTGCTTTCCTTCAGTAAGG
GCGCTTTCCCATTAGGGCGGTTGTTGATGCCCGTGGTGAGACCGTTACAG
AACCGTTTCTTGGTCGACGTTGGAAGAGCAATGCAGAAGCTGGTAGGAGA
ATCGGTACCAGAAAAAAGCGTGGTGGCGAACAAATCAAAATGGTGGTGGA
AATGA

Synonyms

Publications